Wall clock time and date at job start Tue Mar 31 2020 08:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00379 * 2 1 4 4 C 1.52994 * 109.47302 * 267.94099 * 3 2 1 5 5 C 1.53001 * 113.00229 * 54.59365 * 4 3 2 6 6 C 1.54042 * 113.81658 * 282.76823 * 4 3 2 7 7 O 1.44445 * 85.42609 * 223.23841 * 6 4 3 8 8 C 1.44182 * 93.37840 * 24.08609 * 7 6 4 9 9 C 1.34787 * 119.99935 * 180.02562 * 2 1 3 10 10 O 1.21275 * 119.99853 * 183.06550 * 9 2 1 11 11 C 1.50693 * 119.99835 * 3.06128 * 9 2 1 12 12 H 1.09003 * 109.47651 * 314.42269 * 11 9 2 13 13 C 1.50701 * 109.47134 * 74.42353 * 11 9 2 14 14 H 1.08005 * 119.99806 * 29.98691 * 13 11 9 15 15 C 1.37879 * 120.00466 * 209.97669 * 13 11 9 16 16 N 1.31513 * 120.00211 * 186.18073 * 15 13 11 17 17 Si 1.86801 * 119.99694 * 6.18949 * 15 13 11 18 18 H 1.48505 * 109.47000 * 275.49211 * 17 15 13 19 19 H 1.48499 * 109.47387 * 35.49250 * 17 15 13 20 20 H 1.48496 * 109.47250 * 155.49530 * 17 15 13 21 21 C 1.50703 * 109.47144 * 194.42538 * 11 9 2 22 22 C 1.38236 * 119.99673 * 292.22028 * 21 11 9 23 23 C 1.38233 * 119.99562 * 179.78818 * 22 21 11 24 24 C 1.38242 * 120.00236 * 0.43962 * 23 22 21 25 25 C 1.38242 * 119.99859 * 359.81578 * 24 23 22 26 26 C 1.38236 * 119.99876 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47191 * 264.74546 * 1 2 3 28 28 H 1.09002 * 109.47271 * 24.74397 * 1 2 3 29 29 H 1.08999 * 109.47372 * 144.74291 * 1 2 3 30 30 H 1.09003 * 109.47023 * 27.93950 * 3 2 1 31 31 H 1.09004 * 109.47110 * 147.93667 * 3 2 1 32 32 H 1.09001 * 109.47113 * 59.99861 * 5 4 3 33 33 H 1.08995 * 109.47402 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46780 * 300.00114 * 5 4 3 35 35 H 1.08998 * 113.86075 * 337.34306 * 6 4 3 36 36 H 1.08995 * 113.86619 * 109.04398 * 6 4 3 37 37 H 1.09004 * 113.86272 * 221.76424 * 8 7 6 38 38 H 1.08991 * 113.97990 * 90.07850 * 8 7 6 39 39 H 0.96998 * 119.99736 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.00054 * 359.97438 * 22 21 11 41 41 H 1.07996 * 120.00030 * 180.27425 * 23 22 21 42 42 H 1.08000 * 120.00039 * 179.83317 * 24 23 22 43 43 H 1.07994 * 119.99842 * 179.97438 * 25 24 23 44 44 H 1.07990 * 119.99833 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4975 1.6844 -1.4415 5 6 1.2450 1.7495 -2.3179 6 6 3.6652 0.9105 -2.0820 7 8 4.0839 2.1948 -2.5936 8 6 3.4014 2.9264 -1.5553 9 6 2.1389 -1.1673 -0.0005 10 8 3.3503 -1.1681 0.0556 11 6 1.3870 -2.4713 -0.0708 12 1 0.5492 -2.4458 0.6261 13 6 0.8694 -2.6780 -1.4710 14 1 1.4099 -2.2696 -2.3122 15 6 -0.2939 -3.3885 -1.6783 16 7 -0.6812 -3.6734 -2.9024 17 14 -1.3199 -3.9462 -0.2203 18 1 -0.7843 -5.2299 0.2998 19 1 -1.2624 -2.9167 0.8483 20 1 -2.7287 -4.1355 -0.6500 21 6 2.3108 -3.6042 0.2957 22 6 3.3607 -3.9376 -0.5395 23 6 4.2106 -4.9739 -0.2012 24 6 4.0053 -5.6828 0.9678 25 6 2.9521 -5.3528 1.8003 26 6 2.1047 -4.3137 1.4641 27 1 -0.3634 -0.0941 1.0234 28 1 -0.3634 0.9333 -0.4301 29 1 -0.3634 -0.8391 -0.5932 30 1 1.5930 2.0373 0.4815 31 1 3.1334 1.1478 0.5456 32 1 0.5478 2.4767 -1.9019 33 1 1.5236 2.0493 -3.3281 34 1 0.7714 0.7682 -2.3481 35 1 4.3563 0.4773 -1.3589 36 1 3.3565 0.2060 -2.8542 37 1 2.8840 3.8174 -1.9110 38 1 4.0101 3.1114 -0.6704 39 1 -1.4994 -4.1736 -3.0481 40 1 3.5187 -3.3864 -1.4547 41 1 5.0336 -5.2315 -0.8514 42 1 4.6677 -6.4942 1.2307 43 1 2.7914 -5.9069 2.7132 44 1 1.2823 -4.0556 2.1146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461681710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:30 Heat of formation + Delta-G solvation = -20.634709 kcal Electronic energy + Delta-G solvation = -26167.781027 eV Core-core repulsion = 22665.504138 eV Total energy + Delta-G solvation = -3502.276889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -40.62130 -39.28606 -37.93403 -35.11879 -33.77294 -31.88680 -31.37217 -30.11930 -28.19263 -27.34843 -26.35226 -25.56002 -24.98920 -23.24771 -21.82424 -20.85295 -18.82397 -18.24457 -17.20168 -16.41094 -16.18632 -15.94586 -15.80694 -15.64511 -14.98264 -14.63586 -14.23241 -13.80934 -13.70893 -13.34505 -12.96247 -12.76414 -12.66078 -12.53780 -12.43203 -12.21167 -11.94148 -11.83463 -11.75440 -11.59657 -11.21410 -11.08054 -10.98251 -10.49522 -10.45210 -10.29867 -10.20217 -9.96243 -9.59126 -9.42197 -8.94459 -8.72472 -8.11903 -8.03340 -7.81837 -6.34142 -4.36950 2.15132 2.22912 3.10203 3.17952 3.23258 3.46721 3.63086 3.96143 4.17691 4.43820 4.63150 4.94963 4.96754 5.20756 5.28338 5.42588 5.55251 5.57362 5.61022 5.66443 5.70208 5.74575 5.80910 5.92211 5.96065 6.02456 6.06954 6.09269 6.22157 6.27958 6.32255 6.33338 6.45171 6.45825 6.47451 6.54609 6.73477 6.86720 7.09901 7.17526 7.26539 7.27704 7.60997 7.80265 7.99996 8.21502 8.66412 9.01189 9.22853 10.76659 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.006251 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.123135 B = 4477.997828 C = 5532.282225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.126 3.874 4 C -0.143 4.143 5 C -0.128 4.128 6 C 0.052 3.948 7 O -0.388 6.388 8 C 0.044 3.956 9 C 0.539 3.461 10 O -0.555 6.555 11 C 0.024 3.976 12 H 0.064 0.936 13 C -0.504 4.504 14 H 0.082 0.918 15 C 0.087 3.913 16 N -0.879 5.879 17 Si 0.859 3.141 18 H -0.266 1.266 19 H -0.261 1.261 20 H -0.284 1.284 21 C -0.034 4.034 22 C -0.064 4.064 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.137 4.137 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.269 0.731 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 7.321 6.683 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.345 5.345 3 C 0.002 3.998 4 C -0.144 4.144 5 C -0.185 4.185 6 C -0.024 4.024 7 O -0.307 6.307 8 C -0.034 4.034 9 C 0.330 3.670 10 O -0.433 6.433 11 C 0.003 3.997 12 H 0.082 0.918 13 C -0.541 4.541 14 H 0.100 0.900 15 C -0.118 4.118 16 N -0.515 5.515 17 Si 0.686 3.314 18 H -0.191 1.191 19 H -0.186 1.186 20 H -0.210 1.210 21 C -0.035 4.035 22 C -0.082 4.082 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.155 4.155 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.593 7.295 6.357 10.017 hybrid contribution -0.943 -0.478 0.799 1.325 sum 1.649 6.817 7.155 10.019 Atomic orbital electron populations 1.22040 0.79566 1.04368 1.01259 1.47631 1.06902 1.05070 1.74881 1.21383 0.97802 0.85926 0.94702 1.24054 0.97267 0.95633 0.97448 1.21586 0.95173 1.03249 0.98468 1.24176 0.93634 0.86830 0.97790 1.89659 1.76310 1.18721 1.46055 1.23935 0.92531 0.95561 0.91345 1.21096 0.87596 0.85481 0.72860 1.90558 1.14518 1.87609 1.50616 1.18512 0.93863 0.87076 1.00251 0.91788 1.20409 1.08747 1.36010 0.88954 0.90036 1.24936 0.97077 0.94324 0.95445 1.69860 1.23708 1.37982 1.19924 0.87093 0.80123 0.80665 0.83549 1.19097 1.18644 1.21014 1.20130 0.94528 0.96706 0.92152 1.20870 0.93277 0.95244 0.98802 1.21059 0.99798 0.97018 0.97081 1.20870 0.98705 1.00531 0.95876 1.20866 0.96289 0.98270 0.99488 1.20970 0.99836 0.97618 0.97106 0.94015 0.91893 0.88058 0.90985 0.90112 0.92627 0.92353 0.90308 0.88854 0.89372 0.89624 0.90567 0.92072 0.86237 0.87142 0.87384 0.87352 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.69 59.84 0.52 1.62 16 2 N -0.61 -10.44 2.50 -181.58 -0.45 -10.89 16 3 C 0.13 1.79 4.89 -4.05 -0.02 1.77 16 4 C -0.14 -2.04 1.17 -153.43 -0.18 -2.22 16 5 C -0.13 -1.79 7.85 37.16 0.29 -1.50 16 6 C 0.05 0.88 7.54 37.65 0.28 1.16 16 7 O -0.39 -6.43 12.38 -35.23 -0.44 -6.86 16 8 C 0.04 0.56 8.37 37.64 0.31 0.87 16 9 C 0.54 11.03 6.59 -10.98 -0.07 10.96 16 10 O -0.55 -12.23 13.13 5.56 0.07 -12.16 16 11 C 0.02 0.53 1.09 -94.08 -0.10 0.43 16 12 H 0.06 1.37 4.30 -51.93 -0.22 1.15 16 13 C -0.50 -12.39 6.55 -34.44 -0.23 -12.61 16 14 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 15 C 0.09 2.22 5.35 -17.82 -0.10 2.13 16 16 N -0.88 -24.17 13.96 55.43 0.77 -23.40 16 17 Si 0.86 19.16 27.14 -169.99 -4.61 14.55 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.26 -5.32 6.33 56.52 0.36 -4.96 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.03 -0.75 4.30 -104.62 -0.45 -1.20 16 22 C -0.06 -1.38 8.11 -39.58 -0.32 -1.70 16 23 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 24 C -0.14 -2.48 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.14 -2.75 9.67 -39.58 -0.38 -3.13 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.81 6.88 -51.93 -0.36 0.45 16 29 H 0.10 1.87 5.43 -51.93 -0.28 1.58 16 30 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 31 H 0.08 1.22 7.38 -51.93 -0.38 0.84 16 32 H 0.05 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.08 1.29 6.79 -51.93 -0.35 0.94 16 35 H 0.09 1.69 6.90 -51.93 -0.36 1.33 16 36 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 37 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.96 7.96 -52.49 -0.42 1.54 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -28.75 350.55 -7.60 -36.35 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.59 Total: 9.04 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.63 Total: -11.91 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.32 Total: -34.29 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.36 Total: -19.02 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.61 Total: 14.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.75 -7.60 -36.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461681710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.717 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds