Wall clock time and date at job start Tue Mar 31 2020 08:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00379 * 2 1 4 4 C 1.52994 * 109.47302 * 267.94099 * 3 2 1 5 5 C 1.53001 * 113.00229 * 54.59365 * 4 3 2 6 6 C 1.54042 * 113.81658 * 282.76823 * 4 3 2 7 7 O 1.44445 * 85.42609 * 223.23841 * 6 4 3 8 8 C 1.44182 * 93.37840 * 24.08609 * 7 6 4 9 9 C 1.34787 * 119.99935 * 180.02562 * 2 1 3 10 10 O 1.21275 * 119.99853 * 183.06550 * 9 2 1 11 11 C 1.50693 * 119.99835 * 3.06128 * 9 2 1 12 12 H 1.09003 * 109.47651 * 314.42269 * 11 9 2 13 13 C 1.50701 * 109.47134 * 74.42353 * 11 9 2 14 14 H 1.08005 * 119.99806 * 29.98691 * 13 11 9 15 15 C 1.37879 * 120.00466 * 209.97669 * 13 11 9 16 16 N 1.31513 * 120.00211 * 186.18073 * 15 13 11 17 17 Si 1.86801 * 119.99694 * 6.18949 * 15 13 11 18 18 H 1.48505 * 109.47000 * 275.49211 * 17 15 13 19 19 H 1.48499 * 109.47387 * 35.49250 * 17 15 13 20 20 H 1.48496 * 109.47250 * 155.49530 * 17 15 13 21 21 C 1.50703 * 109.47144 * 194.42538 * 11 9 2 22 22 C 1.38236 * 119.99673 * 292.22028 * 21 11 9 23 23 C 1.38233 * 119.99562 * 179.78818 * 22 21 11 24 24 C 1.38242 * 120.00236 * 0.43962 * 23 22 21 25 25 C 1.38242 * 119.99859 * 359.81578 * 24 23 22 26 26 C 1.38236 * 119.99876 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47191 * 264.74546 * 1 2 3 28 28 H 1.09002 * 109.47271 * 24.74397 * 1 2 3 29 29 H 1.08999 * 109.47372 * 144.74291 * 1 2 3 30 30 H 1.09003 * 109.47023 * 27.93950 * 3 2 1 31 31 H 1.09004 * 109.47110 * 147.93667 * 3 2 1 32 32 H 1.09001 * 109.47113 * 59.99861 * 5 4 3 33 33 H 1.08995 * 109.47402 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46780 * 300.00114 * 5 4 3 35 35 H 1.08998 * 113.86075 * 337.34306 * 6 4 3 36 36 H 1.08995 * 113.86619 * 109.04398 * 6 4 3 37 37 H 1.09004 * 113.86272 * 221.76424 * 8 7 6 38 38 H 1.08991 * 113.97990 * 90.07850 * 8 7 6 39 39 H 0.96998 * 119.99736 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.00054 * 359.97438 * 22 21 11 41 41 H 1.07996 * 120.00030 * 180.27425 * 23 22 21 42 42 H 1.08000 * 120.00039 * 179.83317 * 24 23 22 43 43 H 1.07994 * 119.99842 * 179.97438 * 25 24 23 44 44 H 1.07990 * 119.99833 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4975 1.6844 -1.4415 5 6 1.2450 1.7495 -2.3179 6 6 3.6652 0.9105 -2.0820 7 8 4.0839 2.1948 -2.5936 8 6 3.4014 2.9264 -1.5553 9 6 2.1389 -1.1673 -0.0005 10 8 3.3503 -1.1681 0.0556 11 6 1.3870 -2.4713 -0.0708 12 1 0.5492 -2.4458 0.6261 13 6 0.8694 -2.6780 -1.4710 14 1 1.4099 -2.2696 -2.3122 15 6 -0.2939 -3.3885 -1.6783 16 7 -0.6812 -3.6734 -2.9024 17 14 -1.3199 -3.9462 -0.2203 18 1 -0.7843 -5.2299 0.2998 19 1 -1.2624 -2.9167 0.8483 20 1 -2.7287 -4.1355 -0.6500 21 6 2.3108 -3.6042 0.2957 22 6 3.3607 -3.9376 -0.5395 23 6 4.2106 -4.9739 -0.2012 24 6 4.0053 -5.6828 0.9678 25 6 2.9521 -5.3528 1.8003 26 6 2.1047 -4.3137 1.4641 27 1 -0.3634 -0.0941 1.0234 28 1 -0.3634 0.9333 -0.4301 29 1 -0.3634 -0.8391 -0.5932 30 1 1.5930 2.0373 0.4815 31 1 3.1334 1.1478 0.5456 32 1 0.5478 2.4767 -1.9019 33 1 1.5236 2.0493 -3.3281 34 1 0.7714 0.7682 -2.3481 35 1 4.3563 0.4773 -1.3589 36 1 3.3565 0.2060 -2.8542 37 1 2.8840 3.8174 -1.9110 38 1 4.0101 3.1114 -0.6704 39 1 -1.4994 -4.1736 -3.0481 40 1 3.5187 -3.3864 -1.4547 41 1 5.0336 -5.2315 -0.8514 42 1 4.6677 -6.4942 1.2307 43 1 2.7914 -5.9069 2.7132 44 1 1.2823 -4.0556 2.1146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461681710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:28 Heat of formation + Delta-G solvation = -37.607231 kcal Electronic energy + Delta-G solvation = -26168.517011 eV Core-core repulsion = 22665.504138 eV Total energy + Delta-G solvation = -3503.012873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.90636 -40.79178 -39.41173 -36.55547 -35.55240 -33.49122 -32.84705 -31.62065 -29.69678 -28.69155 -27.55216 -26.91140 -26.41519 -24.91482 -23.34286 -22.34274 -20.22123 -19.58452 -19.08295 -17.97578 -17.59408 -17.25940 -17.17749 -16.90420 -16.47047 -16.21560 -15.75601 -15.31425 -15.16177 -14.76900 -14.55632 -14.20697 -14.17478 -13.94594 -13.78500 -13.72314 -13.37723 -13.15210 -12.95828 -12.93233 -12.90694 -12.63753 -12.32899 -12.00587 -11.97414 -11.70454 -11.61124 -11.46455 -11.38634 -10.85993 -10.70343 -10.39619 -9.63489 -9.40464 -9.36162 -8.32461 -6.38447 0.63895 0.71528 1.32435 1.39135 1.43699 1.89185 2.27379 2.31199 2.74806 2.97909 3.13368 3.25562 3.78337 4.00749 4.10489 4.14570 4.17974 4.22619 4.34703 4.40050 4.41127 4.46636 4.54519 4.58916 4.59638 4.67417 4.80969 4.82282 4.85335 4.90569 4.92457 4.99475 5.14407 5.16853 5.20859 5.22219 5.33044 5.35664 5.44011 5.69316 5.74406 5.80514 5.96864 6.21756 6.30234 6.54480 6.63988 7.24027 7.45402 8.82312 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.006251 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.123135 B = 4477.997828 C = 5532.282225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.608 5.608 3 C 0.125 3.875 4 C -0.137 4.137 5 C -0.122 4.122 6 C 0.046 3.954 7 O -0.410 6.410 8 C 0.054 3.946 9 C 0.532 3.468 10 O -0.578 6.578 11 C 0.029 3.971 12 H 0.073 0.927 13 C -0.486 4.486 14 H 0.031 0.969 15 C 0.039 3.961 16 N -0.931 5.931 17 Si 0.913 3.087 18 H -0.270 1.270 19 H -0.226 1.226 20 H -0.284 1.284 21 C -0.062 4.062 22 C -0.095 4.095 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 8.199 10.140 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.002 3.998 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.031 4.031 7 O -0.329 6.329 8 C -0.023 4.023 9 C 0.322 3.678 10 O -0.459 6.459 11 C 0.007 3.993 12 H 0.091 0.909 13 C -0.523 4.523 14 H 0.049 0.951 15 C -0.161 4.161 16 N -0.569 5.569 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.149 1.149 20 H -0.210 1.210 21 C -0.063 4.063 22 C -0.114 4.114 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.169 4.169 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.982 8.220 9.833 12.969 hybrid contribution -0.622 -0.726 -0.338 1.014 sum 1.359 7.494 9.495 12.172 Atomic orbital electron populations 1.22136 0.78375 1.04701 1.02340 1.47663 1.07771 1.05114 1.73358 1.21602 0.98075 0.85445 0.94677 1.24018 0.96577 0.95912 0.97313 1.21528 0.95480 1.02398 0.98477 1.23969 0.95292 0.86932 0.96862 1.89635 1.76986 1.18644 1.47666 1.24198 0.91635 0.95279 0.91164 1.20913 0.87325 0.86281 0.73279 1.90537 1.15371 1.88062 1.51910 1.18404 0.94343 0.88411 0.98109 0.90948 1.20253 1.07945 1.34835 0.89314 0.95116 1.25637 0.98186 0.94427 0.97833 1.70007 1.24553 1.39966 1.22407 0.86224 0.78147 0.80750 0.81247 1.19547 1.14897 1.20978 1.20206 0.95112 0.97356 0.93646 1.20801 0.95207 0.96977 0.98389 1.21350 0.99683 0.96197 0.98309 1.21333 0.98872 1.00624 0.94533 1.21354 0.95199 0.97265 1.00607 1.21254 1.00981 0.98103 0.96605 0.91617 0.88782 0.91355 0.86584 0.90934 0.89058 0.93048 0.93442 0.90472 0.92554 0.86659 0.88489 0.92188 0.89558 0.85188 0.83378 0.83419 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.95 8.69 127.77 1.11 3.06 16 2 N -0.61 -20.32 2.50 -846.77 -2.11 -22.44 16 3 C 0.12 3.31 4.89 86.38 0.42 3.73 16 4 C -0.14 -3.80 1.17 -51.48 -0.06 -3.86 16 5 C -0.12 -3.31 7.85 71.98 0.56 -2.75 16 6 C 0.05 1.66 7.54 72.30 0.55 2.21 16 7 O -0.41 -13.65 12.38 -148.98 -1.84 -15.49 16 8 C 0.05 1.24 8.37 72.29 0.60 1.85 16 9 C 0.53 22.38 6.59 87.65 0.58 22.96 16 10 O -0.58 -26.66 13.13 -3.02 -0.04 -26.70 16 11 C 0.03 1.29 1.09 -13.03 -0.01 1.27 16 12 H 0.07 3.04 4.30 -2.39 -0.01 3.03 16 13 C -0.49 -25.37 6.55 25.60 0.17 -25.21 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.04 2.08 5.35 84.66 0.45 2.53 16 16 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 17 Si 0.91 39.37 27.14 68.60 1.86 41.24 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.23 -8.34 6.33 99.48 0.63 -7.71 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.06 -2.77 4.30 -19.86 -0.09 -2.85 16 22 C -0.10 -4.33 8.11 22.27 0.18 -4.15 16 23 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 24 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 25 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 26 C -0.15 -5.79 9.67 22.27 0.22 -5.58 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 2.13 6.88 -2.39 -0.02 2.11 16 29 H 0.07 2.50 5.43 -2.39 -0.01 2.49 16 30 H 0.12 2.12 8.06 -2.39 -0.02 2.10 16 31 H 0.07 2.10 7.38 -2.38 -0.02 2.08 16 32 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 33 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.05 1.59 6.79 -2.39 -0.02 1.58 16 35 H 0.08 3.00 6.90 -2.39 -0.02 2.99 16 36 H 0.06 2.33 8.10 -2.39 -0.02 2.31 16 37 H 0.12 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.10 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 41 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.12 4.18 7.96 -2.92 -0.02 4.15 16 Total: -1.00 -68.65 350.55 4.42 -64.23 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.91 Total: 32.60 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 5.35 Total: -19.74 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.82 Total: -76.14 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.88 Total: -42.19 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.86 Total: 41.24 kcal Total: -68.65 4.42 -64.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461681710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.619 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds