Wall clock time and date at job start Tue Mar 31 2020 10:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 14 14 O 1.45206 * 109.46777 * 60.00060 * 13 2 1 15 15 C 1.34232 * 116.99878 * 180.02562 * 14 13 2 16 16 O 1.20825 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99723 * 179.97438 * 15 14 13 18 18 H 1.08999 * 115.55075 * 34.33446 * 17 15 14 19 19 C 1.53003 * 117.50186 * 248.62231 * 17 15 14 20 20 C 1.53001 * 60.00186 * 252.51270 * 19 17 15 21 21 H 1.09005 * 117.50140 * 107.48426 * 20 19 17 22 22 C 1.50699 * 117.52132 * 252.51770 * 20 19 17 23 23 C 1.38653 * 120.78856 * 8.34779 * 22 20 19 24 24 C 1.38198 * 119.16435 * 179.75288 * 23 22 20 25 25 N 1.31874 * 120.76360 * 0.53679 * 24 23 22 26 26 C 1.31867 * 121.72431 * 359.73736 * 25 24 23 27 27 C 1.38202 * 120.76373 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 33 33 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 39 39 H 1.08993 * 117.49694 * 0.02562 * 19 17 15 40 40 H 1.08995 * 117.49906 * 145.02560 * 19 17 15 41 41 H 1.08000 * 120.41670 * 0.02562 * 23 22 20 42 42 H 1.08000 * 119.62314 * 180.29114 * 24 23 22 43 43 H 1.08003 * 119.61824 * 180.02562 * 26 25 24 44 44 H 1.08008 * 120.41957 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 1.4332 0.1388 4.8058 9 14 2.9451 -2.0004 3.9035 10 1 4.3728 -1.5945 3.9482 11 1 2.5943 -2.7158 5.1564 12 1 2.7219 -2.8981 2.7417 13 6 2.0400 -0.7213 -1.2492 14 8 1.5560 -0.0368 -2.4348 15 6 1.9163 -0.5472 -3.6229 16 8 2.6125 -1.5335 -3.6706 17 6 1.4513 0.1092 -4.8971 18 1 1.3628 1.1951 -4.8614 19 6 0.4429 -0.6542 -5.7580 20 6 1.8956 -0.5202 -6.2190 21 1 2.5243 -1.4092 -6.1669 22 6 2.1775 0.4084 -7.3719 23 6 1.1864 1.2384 -7.8734 24 6 1.4832 2.0805 -8.9282 25 7 2.6885 2.0925 -9.4633 26 6 3.6535 1.3131 -9.0159 27 6 3.4323 0.4491 -7.9602 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6675 -0.1926 5.6868 37 1 3.1300 -0.7217 -1.2490 38 1 1.6766 -1.7490 -1.2492 39 1 0.1155 -1.6312 -5.4025 40 1 -0.3094 -0.0708 -6.2888 41 1 0.1963 1.2301 -7.4421 42 1 0.7182 2.7335 -9.3215 43 1 4.6283 1.3510 -9.4794 44 1 4.2267 -0.1870 -7.5985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514984900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:57 Heat of formation + Delta-G solvation = -41.378651 kcal Electronic energy + Delta-G solvation = -23799.705623 eV Core-core repulsion = 20296.529209 eV Total energy + Delta-G solvation = -3503.176414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99827 -40.27360 -38.06794 -36.82050 -35.49680 -32.43952 -32.30268 -31.56754 -28.12749 -27.02497 -26.48604 -25.31363 -24.63005 -23.63782 -22.46953 -21.37532 -20.27993 -18.31355 -18.12210 -17.05141 -16.93500 -16.67762 -16.24922 -16.06031 -15.91176 -14.60378 -14.33498 -14.24020 -14.08086 -13.89036 -13.78778 -13.52375 -12.84127 -12.62802 -12.45464 -12.39588 -12.20647 -12.04495 -11.57807 -11.38978 -11.09531 -11.05461 -11.00638 -10.63614 -10.56336 -10.45576 -10.39834 -9.89250 -9.87095 -9.80047 -9.72811 -9.54373 -9.53714 -9.03102 -8.56588 -6.06711 -4.04315 0.73853 0.75727 2.04628 2.63381 3.23380 3.28438 3.36587 3.39499 3.59016 3.99436 4.08951 4.18996 4.28592 4.42421 4.46597 4.66193 4.74917 4.80946 4.84266 5.14983 5.24389 5.25807 5.32922 5.36650 5.40684 5.45887 5.49477 5.64820 5.65405 5.90192 5.95054 6.04952 6.22813 6.29611 6.45233 6.50057 6.63416 6.66756 6.91523 7.02946 7.05326 7.16800 7.30958 7.59097 7.72220 7.82124 8.50465 8.97616 9.55202 11.05905 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032468 B = 0.002415 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.169647 B =11589.921418 C =11771.988993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.077 3.923 14 O -0.341 6.341 15 C 0.487 3.513 16 O -0.513 6.513 17 C -0.147 4.147 18 H 0.138 0.862 19 C -0.136 4.136 20 C -0.092 4.092 21 H 0.134 0.866 22 C -0.009 4.009 23 C -0.172 4.172 24 C 0.101 3.899 25 N -0.489 5.489 26 C 0.101 3.899 27 C -0.162 4.162 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 0.884 -26.519 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.004 3.996 14 O -0.257 6.257 15 C 0.330 3.670 16 O -0.402 6.402 17 C -0.166 4.166 18 H 0.156 0.844 19 C -0.173 4.173 20 C -0.110 4.110 21 H 0.151 0.849 22 C -0.017 4.017 23 C -0.192 4.192 24 C -0.055 4.055 25 N -0.198 5.198 26 C -0.056 4.056 27 C -0.182 4.182 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.270 1.147 -26.977 27.002 hybrid contribution 0.619 -1.534 1.163 2.022 sum 0.350 -0.387 -25.813 25.818 Atomic orbital electron populations 1.21730 0.94298 1.01028 1.01425 1.20583 0.96541 0.96218 0.91552 1.21737 0.99928 0.95442 1.01414 1.19629 0.95930 0.95919 0.92573 1.21028 1.32006 1.13354 0.88388 0.90200 1.24991 0.95755 0.96702 0.95959 1.69895 1.45850 1.40469 0.97881 0.86865 0.81212 0.84059 0.77672 1.20334 1.21391 1.19098 1.23553 0.98934 0.95939 0.81224 1.86481 1.69029 1.55634 1.14557 1.22357 0.77316 0.81954 0.85357 1.90655 1.35690 1.25740 1.88104 1.21834 1.06683 1.01084 0.87030 0.84420 1.23225 0.91818 1.02298 0.99936 1.21190 0.99444 0.99981 0.90363 0.84857 1.19485 0.93601 0.94387 0.94196 1.22096 1.00530 0.97715 0.98839 1.22776 0.93916 0.96209 0.92631 1.67688 1.01172 1.21684 1.29283 1.22792 0.98257 0.91214 0.93310 1.22050 0.97324 1.00987 0.97831 0.90959 0.93944 0.93808 0.93816 0.93984 0.90944 0.96376 0.96830 0.92731 0.91566 0.91564 0.87074 0.86668 0.84440 0.82571 0.82548 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 2 C -0.05 -0.94 0.61 -154.51 -0.09 -1.03 16 3 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.73 8.20 -34.44 -0.28 -14.01 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.87 21.39 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.08 1.32 4.32 37.16 0.16 1.48 16 14 O -0.34 -5.29 8.88 -39.26 -0.35 -5.64 16 15 C 0.49 6.80 7.74 36.00 0.28 7.07 16 16 O -0.51 -8.41 16.01 -18.75 -0.30 -8.71 16 17 C -0.15 -1.43 5.95 -91.77 -0.55 -1.97 16 18 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.14 -0.99 9.59 -26.73 -0.26 -1.25 16 20 C -0.09 -0.77 5.59 -91.77 -0.51 -1.29 16 21 H 0.13 1.23 7.67 -51.93 -0.40 0.83 16 22 C -0.01 -0.07 5.64 -104.32 -0.59 -0.66 16 23 C -0.17 -1.21 9.39 -39.44 -0.37 -1.58 16 24 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 25 N -0.49 -4.60 10.36 -13.25 -0.14 -4.74 16 26 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 27 C -0.16 -1.27 9.84 -39.44 -0.39 -1.66 16 28 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 29 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 33 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 38 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.12 0.57 6.26 -51.93 -0.32 0.25 16 41 H 0.14 0.66 6.16 -52.49 -0.32 0.34 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -32.03 362.09 -8.38 -40.41 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.58 Total: -0.98 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.58 Total: -16.18 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.64 Total: -31.09 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.65 Total: -14.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.03 -8.38 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514984900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.964 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds