Wall clock time and date at job start Tue Mar 31 2020 10:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 14 14 O 1.45206 * 109.46777 * 60.00060 * 13 2 1 15 15 C 1.34232 * 116.99878 * 180.02562 * 14 13 2 16 16 O 1.20825 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99723 * 179.97438 * 15 14 13 18 18 H 1.08999 * 115.55075 * 34.33446 * 17 15 14 19 19 C 1.53003 * 117.50186 * 248.62231 * 17 15 14 20 20 C 1.53001 * 60.00186 * 252.51270 * 19 17 15 21 21 H 1.09005 * 117.50140 * 107.48426 * 20 19 17 22 22 C 1.50699 * 117.52132 * 252.51770 * 20 19 17 23 23 C 1.38653 * 120.78856 * 8.34779 * 22 20 19 24 24 C 1.38198 * 119.16435 * 179.75288 * 23 22 20 25 25 N 1.31874 * 120.76360 * 0.53679 * 24 23 22 26 26 C 1.31867 * 121.72431 * 359.73736 * 25 24 23 27 27 C 1.38202 * 120.76373 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 33 33 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 39 39 H 1.08993 * 117.49694 * 0.02562 * 19 17 15 40 40 H 1.08995 * 117.49906 * 145.02560 * 19 17 15 41 41 H 1.08000 * 120.41670 * 0.02562 * 23 22 20 42 42 H 1.08000 * 119.62314 * 180.29114 * 24 23 22 43 43 H 1.08003 * 119.61824 * 180.02562 * 26 25 24 44 44 H 1.08008 * 120.41957 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 1.4332 0.1388 4.8058 9 14 2.9451 -2.0004 3.9035 10 1 4.3728 -1.5945 3.9482 11 1 2.5943 -2.7158 5.1564 12 1 2.7219 -2.8981 2.7417 13 6 2.0400 -0.7213 -1.2492 14 8 1.5560 -0.0368 -2.4348 15 6 1.9163 -0.5472 -3.6229 16 8 2.6125 -1.5335 -3.6706 17 6 1.4513 0.1092 -4.8971 18 1 1.3628 1.1951 -4.8614 19 6 0.4429 -0.6542 -5.7580 20 6 1.8956 -0.5202 -6.2190 21 1 2.5243 -1.4092 -6.1669 22 6 2.1775 0.4084 -7.3719 23 6 1.1864 1.2384 -7.8734 24 6 1.4832 2.0805 -8.9282 25 7 2.6885 2.0925 -9.4633 26 6 3.6535 1.3131 -9.0159 27 6 3.4323 0.4491 -7.9602 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6675 -0.1926 5.6868 37 1 3.1300 -0.7217 -1.2490 38 1 1.6766 -1.7490 -1.2492 39 1 0.1155 -1.6312 -5.4025 40 1 -0.3094 -0.0708 -6.2888 41 1 0.1963 1.2301 -7.4421 42 1 0.7182 2.7335 -9.3215 43 1 4.6283 1.3510 -9.4794 44 1 4.2267 -0.1870 -7.5985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514984900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:56 Heat of formation + Delta-G solvation = -58.099549 kcal Electronic energy + Delta-G solvation = -23800.430696 eV Core-core repulsion = 20296.529209 eV Total energy + Delta-G solvation = -3503.901487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88038 -41.07901 -39.17143 -37.92268 -36.83663 -34.41618 -33.01216 -32.09455 -30.00002 -28.35635 -28.00208 -26.25824 -25.37312 -24.40393 -24.05243 -22.06555 -21.22237 -19.83963 -19.09095 -18.90120 -17.84217 -17.55462 -17.41700 -16.91762 -16.41875 -16.25007 -15.57058 -15.45225 -15.02339 -14.97646 -14.79844 -14.50537 -14.28438 -14.09413 -14.04393 -13.40668 -13.07915 -12.99870 -12.87575 -12.71273 -12.61517 -12.30552 -12.24958 -12.12991 -11.87478 -11.79840 -11.73415 -11.56606 -11.37559 -11.21841 -10.96362 -10.72774 -10.43733 -10.32480 -10.07298 -8.24007 -6.25121 0.16282 0.21937 1.02944 1.35001 1.37234 1.47124 1.58022 2.37274 2.58260 2.98741 3.10661 3.32650 3.47989 3.62057 3.64248 3.78576 3.87747 3.90135 3.98611 4.15612 4.17126 4.20826 4.26909 4.47767 4.54845 4.61270 4.65117 4.75528 4.85476 4.90758 4.94809 4.97091 4.97826 5.08924 5.09246 5.24642 5.35557 5.37718 5.38989 5.44680 5.51893 5.61891 5.73395 5.78250 6.35404 6.67971 6.81663 7.04682 7.37237 8.91575 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032468 B = 0.002415 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.169647 B =11589.921418 C =11771.988993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 C -0.122 4.122 4 C -0.003 4.003 5 C -0.504 4.504 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.250 1.250 13 C 0.086 3.914 14 O -0.343 6.343 15 C 0.485 3.515 16 O -0.541 6.541 17 C -0.157 4.157 18 H 0.153 0.847 19 C -0.116 4.116 20 C -0.088 4.088 21 H 0.121 0.879 22 C -0.019 4.019 23 C -0.167 4.167 24 C 0.091 3.909 25 N -0.517 5.517 26 C 0.090 3.910 27 C -0.171 4.171 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.179 0.821 43 H 0.173 0.827 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 0.336 -28.882 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.761 3.239 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.174 1.174 13 C 0.012 3.988 14 O -0.259 6.259 15 C 0.330 3.670 16 O -0.432 6.432 17 C -0.176 4.176 18 H 0.171 0.829 19 C -0.153 4.153 20 C -0.106 4.106 21 H 0.139 0.861 22 C -0.027 4.027 23 C -0.187 4.187 24 C -0.065 4.065 25 N -0.227 5.227 26 C -0.066 4.066 27 C -0.191 4.191 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.545 0.600 -29.370 29.381 hybrid contribution 0.664 -1.299 1.820 2.333 sum 0.119 -0.699 -27.550 27.559 Atomic orbital electron populations 1.21653 0.93736 1.01213 1.01268 1.20448 0.96986 0.96250 0.91143 1.21661 1.00001 0.95055 1.01228 1.19579 0.95941 0.95821 0.92746 1.21295 1.30576 1.12331 0.89990 0.93092 1.25851 0.97488 0.99983 0.95778 1.70040 1.48014 1.42589 0.98469 0.85871 0.79464 0.80539 0.78067 1.19628 1.21305 1.17389 1.23186 0.98692 0.95595 0.81334 1.86470 1.69146 1.55557 1.14690 1.23166 0.76478 0.81586 0.85726 1.90646 1.37034 1.27203 1.88331 1.21909 1.08800 1.01746 0.85183 0.82896 1.23433 0.91683 1.02192 0.97956 1.21109 1.00374 0.99423 0.89666 0.86090 1.19563 0.94055 0.94797 0.94272 1.22341 1.01332 0.96706 0.98285 1.23223 0.93905 0.96628 0.92779 1.67703 1.02163 1.22534 1.30267 1.23098 0.98889 0.91126 0.93528 1.22228 0.97806 1.01138 0.97921 0.93611 0.91507 0.93453 0.93621 0.91629 0.93566 0.96274 0.96562 0.92752 0.91714 0.91504 0.87178 0.83612 0.81880 0.80395 0.80968 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.08 71.98 0.58 -3.77 16 2 C -0.05 -1.80 0.61 -52.18 -0.03 -1.83 16 3 C -0.12 -4.44 8.08 71.98 0.58 -3.86 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.06 16 5 C -0.50 -27.58 8.20 25.60 0.21 -27.37 16 6 H 0.05 3.03 5.92 -2.91 -0.02 3.01 16 7 C 0.01 0.31 5.47 84.65 0.46 0.77 16 8 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 9 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.09 2.81 4.32 71.98 0.31 3.12 16 14 O -0.34 -9.86 8.88 -51.44 -0.46 -10.32 16 15 C 0.49 12.58 7.74 71.23 0.55 13.13 16 16 O -0.54 -17.06 16.01 21.97 0.35 -16.71 16 17 C -0.16 -2.62 5.95 -11.54 -0.07 -2.69 16 18 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 19 C -0.12 -1.29 9.59 30.60 0.29 -1.00 16 20 C -0.09 -1.27 5.59 -11.54 -0.06 -1.34 16 21 H 0.12 2.09 7.67 -2.38 -0.02 2.07 16 22 C -0.02 -0.26 5.64 -19.67 -0.11 -0.37 16 23 C -0.17 -1.84 9.39 22.36 0.21 -1.63 16 24 C 0.09 1.18 11.18 84.68 0.95 2.13 16 25 N -0.52 -9.00 10.36 -195.85 -2.03 -11.03 16 26 C 0.09 1.33 11.18 84.68 0.95 2.28 16 27 C -0.17 -2.45 9.84 22.36 0.22 -2.23 16 28 H 0.04 1.87 6.62 -2.39 -0.02 1.85 16 29 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 2.04 7.68 -2.39 -0.02 2.02 16 33 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 34 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 35 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.15 0.73 6.26 -2.39 -0.01 0.71 16 41 H 0.16 0.83 6.16 -2.91 -0.02 0.82 16 42 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.95 362.09 6.12 -63.83 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.94 Total: 11.35 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.13 Total: -24.72 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.73 Total: -69.30 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.11 Total: -27.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -69.95 6.12 -63.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514984900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.732 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds