Wall clock time and date at job start Tue Mar 31 2020 10:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47136 * 90.00100 * 9 7 5 11 11 H 1.48499 * 109.47548 * 209.99879 * 9 7 5 12 12 H 1.48499 * 109.47078 * 330.00388 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.38995 * 119.99618 * 180.27795 * 14 13 2 16 16 C 1.39390 * 120.03621 * 359.45019 * 15 14 13 17 17 N 1.31980 * 120.10549 * 179.70707 * 16 15 14 18 18 C 1.32128 * 120.17411 * 0.57071 * 17 16 15 19 19 C 1.39227 * 120.06824 * 359.70370 * 18 17 16 20 20 C 1.48411 * 120.04947 * 179.97438 * 19 18 17 21 21 N 1.34067 * 126.67665 * 180.02562 * 20 19 18 22 22 N 1.28985 * 107.26820 * 179.97438 * 21 20 19 23 23 N 1.28726 * 108.94831 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.33404 * 180.02562 * 23 22 21 25 25 N 1.28872 * 109.32452 * 359.75288 * 23 22 21 26 26 N 1.32540 * 120.02889 * 179.72331 * 15 14 13 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.08006 * 119.95121 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.96358 * 179.68376 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 2.2272 1.4394 -5.6615 11 1 1.0826 -0.5805 -6.3613 12 1 -0.0593 1.0371 -4.9613 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8921 -0.5020 3.7078 16 6 2.6888 -1.6386 3.8367 17 7 3.0177 -2.0841 5.0346 18 6 2.5845 -1.4619 6.1167 19 6 1.7837 -0.3293 5.9965 20 6 1.2968 0.3690 7.2122 21 7 0.5233 1.4633 7.2514 22 7 0.3273 1.7493 8.4938 23 7 0.9415 0.8850 9.2237 24 1 0.9521 0.8760 10.1936 25 7 1.5352 0.0301 8.4638 26 7 1.4552 0.1255 4.7904 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 3.0410 -2.1530 2.9547 40 1 2.8515 -1.8324 7.0954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589272818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:19 Heat of formation + Delta-G solvation = 166.491587 kcal Electronic energy + Delta-G solvation = -23576.366705 eV Core-core repulsion = 20043.249379 eV Total energy + Delta-G solvation = -3533.117325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.78052 -41.06279 -37.99983 -35.08865 -34.97803 -34.23570 -33.09422 -32.21271 -29.87122 -27.11984 -26.55262 -26.53728 -25.56363 -25.03349 -23.58827 -23.05583 -21.84942 -19.67840 -18.62178 -17.59944 -17.48039 -17.22271 -16.61531 -16.33290 -15.52593 -15.26859 -14.64695 -14.41268 -14.28779 -14.14018 -13.22929 -13.09784 -12.67979 -12.64041 -12.57551 -12.10737 -11.83268 -11.60106 -11.57890 -11.49161 -11.44644 -11.07426 -11.02437 -10.88650 -10.68217 -10.50972 -10.30182 -10.00421 -9.72833 -9.29812 -9.25391 -8.99871 -8.40606 -7.81906 -6.05122 -4.06162 0.24791 0.87586 1.24183 1.83655 2.04143 2.85024 3.28744 3.34019 3.36178 3.38525 3.75530 3.86927 4.31976 4.41840 4.42794 4.66682 4.99039 5.09295 5.20823 5.30385 5.30653 5.36880 5.45172 5.67666 5.95447 6.01208 6.07454 6.11141 6.20032 6.30827 6.54812 6.58947 6.73918 6.99093 7.01591 7.04612 7.40800 7.48774 7.55480 7.67185 7.81443 7.92222 7.93445 8.34967 8.98198 9.57505 11.06273 Molecular weight = 303.15amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.002541 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.156117 B =11018.466448 C =11642.232872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.697 5.697 15 C 0.371 3.629 16 C 0.010 3.990 17 N -0.397 5.397 18 C 0.010 3.990 19 C 0.202 3.798 20 C 0.228 3.772 21 N -0.237 5.237 22 N -0.052 5.052 23 N -0.226 5.226 24 H 0.477 0.523 25 N -0.279 5.279 26 N -0.480 5.480 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.409 0.591 39 H 0.174 0.826 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 1.883 23.675 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.070 4.070 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.003 3.997 14 N -0.328 5.328 15 C 0.128 3.872 16 C -0.162 4.162 17 N -0.109 5.109 18 C -0.153 4.153 19 C 0.058 3.942 20 C -0.054 4.054 21 N -0.110 5.110 22 N -0.048 5.048 23 N -0.072 5.072 24 H 0.331 0.669 25 N -0.133 5.133 26 N -0.204 5.204 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.191 0.809 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.478 2.138 23.666 23.808 hybrid contribution -0.304 0.460 -0.576 0.798 sum -1.782 2.597 23.089 23.303 Atomic orbital electron populations 1.21776 0.95025 1.01261 1.00576 1.20882 0.95705 0.95970 0.94395 1.21778 1.00520 0.95776 1.00575 1.19108 0.96366 0.95236 0.89424 1.21163 1.31280 1.12094 0.90447 0.92227 1.24997 0.95284 0.95052 0.99105 1.69947 1.36988 1.22941 1.23524 0.86646 0.79235 0.79426 0.83005 1.20754 1.21329 1.19924 1.21903 0.98795 0.96166 0.82829 1.45003 1.54429 1.32527 1.00884 1.19331 0.90755 0.90391 0.86710 1.23409 0.99956 0.95960 0.96876 1.68331 1.16908 1.27693 0.98016 1.23161 0.99107 0.94182 0.98872 1.18315 0.95824 0.92753 0.87291 1.22968 0.98359 0.93690 0.90384 1.76304 1.13915 1.12398 1.08374 1.79020 1.14275 1.14119 0.97348 1.47776 1.31031 1.15626 1.12773 0.66864 1.74887 1.19381 1.16797 1.02193 1.67653 1.24407 1.31604 0.96780 0.94987 0.91303 0.93300 0.93301 0.91313 0.94977 0.96243 0.96225 0.93004 0.91483 0.91467 0.75266 0.80889 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.20 0.54 -154.51 -0.08 -1.29 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.07 7.65 -34.44 -0.26 -13.33 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.13 1.84 3.79 -4.04 -0.02 1.82 16 14 N -0.70 -9.55 5.13 -60.31 -0.31 -9.86 16 15 C 0.37 5.17 7.66 -154.81 -1.19 3.98 16 16 C 0.01 0.13 10.48 -17.06 -0.18 -0.05 16 17 N -0.40 -5.21 10.48 -12.62 -0.13 -5.34 16 18 C 0.01 0.11 10.87 -17.06 -0.19 -0.07 16 19 C 0.20 2.66 6.76 -82.79 -0.56 2.10 16 20 C 0.23 2.79 8.05 -156.29 -1.26 1.53 16 21 N -0.24 -3.13 12.53 32.15 0.40 -2.73 16 22 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 23 N -0.23 -1.52 7.90 60.35 0.48 -1.04 16 24 H 0.48 0.67 8.96 -340.36 -3.05 -2.38 16 25 N -0.28 -2.59 12.07 32.17 0.39 -2.20 16 26 N -0.48 -7.04 10.48 -8.78 -0.09 -7.13 16 27 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 0.95 7.95 -51.92 -0.41 0.54 16 37 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 38 H 0.41 5.63 6.29 -40.82 -0.26 5.38 16 39 H 0.17 1.99 6.71 -52.48 -0.35 1.64 16 40 H 0.17 1.59 7.87 -52.49 -0.41 1.18 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -31.02 336.82 -8.43 -39.45 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.42 Total: -0.57 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.34 Total: -6.92 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 2.28 Total: -52.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.02 -8.43 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589272818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.941 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds