Wall clock time and date at job start Tue Mar 31 2020 09:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47467 * 2 1 4 4 C 1.50702 * 109.47033 * 120.00326 * 2 1 3 5 5 O 1.20830 * 119.99945 * 119.99755 * 4 2 1 6 6 O 1.34228 * 119.99828 * 299.99609 * 4 2 1 7 7 C 1.50702 * 109.46833 * 240.00154 * 2 1 3 8 8 C 1.38289 * 119.92756 * 359.72415 * 7 2 1 9 9 C 1.38102 * 120.07547 * 179.72363 * 8 7 2 10 10 C 1.38912 * 119.92070 * 0.55412 * 9 8 7 11 11 N 1.39680 * 120.07236 * 179.70520 * 10 9 8 12 12 C 1.46501 * 119.99675 * 354.75827 * 11 10 9 13 13 C 1.53001 * 109.46946 * 185.17151 * 12 11 10 14 14 C 1.50704 * 115.55242 * 65.19546 * 13 12 11 15 15 H 1.08000 * 119.99707 * 264.81998 * 14 13 12 16 16 C 1.37879 * 119.99832 * 84.81703 * 14 13 12 17 17 N 1.31509 * 119.99653 * 184.67333 * 16 14 13 18 18 Si 1.86801 * 120.00013 * 4.67833 * 16 14 13 19 19 H 1.48492 * 109.47435 * 94.52426 * 18 16 14 20 20 H 1.48506 * 109.46719 * 214.52380 * 18 16 14 21 21 H 1.48504 * 109.47037 * 334.52198 * 18 16 14 22 22 C 1.53000 * 117.49873 * 279.52911 * 13 12 11 23 23 C 1.53001 * 117.49936 * 210.86663 * 13 12 11 24 24 C 1.38909 * 119.85615 * 359.72349 * 10 9 8 25 25 C 1.38101 * 119.92094 * 359.97438 * 24 10 9 26 26 H 1.09005 * 109.47034 * 299.99772 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00026 * 1 2 3 28 28 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47773 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47415 * 300.00460 * 3 2 1 31 31 H 1.09002 * 109.47225 * 59.99786 * 3 2 1 32 32 H 0.96700 * 116.99608 * 180.02562 * 6 4 2 33 33 H 1.07999 * 119.95679 * 359.97438 * 8 7 2 34 34 H 1.08000 * 120.03897 * 180.27681 * 9 8 7 35 35 H 0.96996 * 120.00157 * 174.76471 * 11 10 9 36 36 H 1.09005 * 109.47351 * 305.16562 * 12 11 10 37 37 H 1.08994 * 109.47087 * 65.17227 * 12 11 10 38 38 H 0.97010 * 119.99956 * 180.02562 * 17 16 14 39 39 H 1.09001 * 117.49893 * 359.97438 * 22 13 12 40 40 H 1.08998 * 117.50345 * 145.02423 * 22 13 12 41 41 H 1.08998 * 117.50202 * 214.97576 * 23 13 12 42 42 H 1.09002 * 117.49699 * 359.97438 * 23 13 12 43 43 H 1.08001 * 120.04161 * 180.02562 * 24 10 9 44 44 H 1.08004 * 119.96161 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6929 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.0323 -0.7104 -1.2305 8 6 1.1323 -1.2403 -2.1369 9 6 1.5891 -1.8869 -3.2684 10 6 2.9545 -2.0148 -3.4898 11 7 3.4201 -2.6736 -4.6301 12 6 2.4730 -3.3301 -5.5346 13 6 3.2436 -4.0795 -6.6235 14 6 4.0853 -5.2348 -6.1460 15 1 5.1349 -5.0886 -5.9381 16 6 3.5152 -6.4785 -5.9746 17 7 4.2259 -7.4638 -5.4712 18 14 1.7334 -6.7638 -6.4577 19 1 1.6757 -7.3080 -7.8380 20 1 1.1147 -7.7325 -5.5173 21 1 0.9932 -5.4776 -6.4013 22 6 3.7701 -3.2630 -7.8055 23 6 2.5811 -4.2081 -7.9966 24 6 3.8559 -1.4864 -2.5744 25 6 3.3922 -0.8355 -1.4481 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0541 -0.7407 3.2088 33 1 0.0709 -1.1448 -1.9616 34 1 0.8857 -2.2967 -3.9782 35 1 4.3704 -2.6965 -4.8229 36 1 1.8618 -4.0353 -4.9714 37 1 1.8307 -2.5796 -5.9952 38 1 3.8249 -8.3390 -5.3509 39 1 3.5671 -2.1921 -7.8076 40 1 4.7249 -3.5618 -8.2381 41 1 2.7543 -5.1281 -8.5548 42 1 1.5960 -3.7591 -8.1241 43 1 4.9181 -1.5837 -2.7437 44 1 4.0924 -0.4247 -0.7358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589641589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:43 Heat of formation + Delta-G solvation = -43.535669 kcal Electronic energy + Delta-G solvation = -24587.639033 eV Core-core repulsion = 21084.369083 eV Total energy + Delta-G solvation = -3503.269949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81319 -39.07254 -37.48480 -36.19903 -35.79185 -33.38873 -32.13943 -30.75603 -28.54864 -27.58708 -26.09453 -24.96246 -24.53656 -22.26485 -21.78464 -21.48836 -19.65931 -19.09821 -17.89567 -17.08343 -16.50562 -16.46537 -15.75617 -15.37279 -14.97049 -14.79016 -14.21113 -13.88996 -13.86930 -13.60337 -13.32261 -13.09481 -12.81095 -12.69375 -12.57834 -12.36152 -12.24234 -12.02924 -11.79727 -11.64020 -11.43747 -11.16321 -11.01574 -10.81082 -10.55229 -10.52476 -10.27283 -10.20409 -9.65925 -9.54061 -9.06817 -8.67425 -8.54539 -8.53451 -6.81395 -6.15830 -4.19837 1.82827 1.88164 2.19265 3.02622 3.25177 3.35904 3.38368 4.01158 4.25960 4.37906 4.48522 4.68053 4.83540 4.91527 5.12624 5.16597 5.27109 5.32633 5.40490 5.54546 5.58349 5.64755 5.66291 5.79113 5.86641 5.95907 5.96429 6.01687 6.05838 6.11539 6.17552 6.36265 6.38623 6.40454 6.43824 6.64755 6.73528 6.78494 6.94572 6.97632 7.04218 7.27381 7.66723 7.85740 7.95620 8.39316 8.42582 8.85247 9.46821 10.95829 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.003381 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.579893 B = 8278.487510 C = 8596.925557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.006 3.994 3 C -0.137 4.137 4 C 0.479 3.521 5 O -0.497 6.497 6 O -0.519 6.519 7 C -0.161 4.161 8 C -0.058 4.058 9 C -0.209 4.209 10 C 0.240 3.760 11 N -0.717 5.717 12 C 0.161 3.839 13 C -0.012 4.012 14 C -0.489 4.489 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.256 1.256 22 C -0.179 4.179 23 C -0.193 4.193 24 C -0.205 4.205 25 C -0.036 4.036 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.406 0.594 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.404 0.596 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 17.616 10.257 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.004 3.996 3 C -0.194 4.194 4 C 0.320 3.680 5 O -0.383 6.383 6 O -0.332 6.332 7 C -0.164 4.164 8 C -0.077 4.077 9 C -0.232 4.232 10 C 0.132 3.868 11 N -0.341 5.341 12 C 0.036 3.964 13 C -0.013 4.013 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.124 4.124 17 N -0.530 5.530 18 Si 0.706 3.294 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.180 1.180 22 C -0.217 4.217 23 C -0.231 4.231 24 C -0.228 4.228 25 C -0.055 4.055 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.264 0.736 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.239 0.761 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.578 17.227 9.774 21.206 hybrid contribution -0.261 -0.943 0.186 0.996 sum -7.839 16.284 9.960 20.635 Atomic orbital electron populations 1.21935 0.91772 1.02972 1.03277 1.19124 0.97241 0.95549 0.87641 1.21886 1.01600 0.92772 1.03139 1.23630 0.77240 0.82688 0.84436 1.90772 1.35015 1.25541 1.86959 1.84529 1.72586 1.59151 1.16884 1.18758 0.93656 1.07452 0.96511 1.20711 0.98671 0.95257 0.93063 1.20567 0.93786 1.08071 1.00820 1.17999 0.92790 0.89390 0.86602 1.44779 1.09964 1.56448 1.22884 1.21117 0.90838 0.93505 0.90920 1.19578 0.98472 0.97696 0.85553 1.20181 0.96343 0.90786 1.45351 0.90534 1.24971 0.97696 0.95870 0.93820 1.69898 1.37136 1.02430 1.43572 0.86851 0.85774 0.78565 0.78165 1.20580 1.22021 1.18035 1.22845 0.97823 0.95165 1.05820 1.22957 0.95622 1.01312 1.03165 1.20500 0.98759 1.06988 0.96527 1.20448 0.94255 0.95660 0.95122 0.91345 0.90561 0.91758 0.92060 0.90770 0.91464 0.73624 0.86281 0.86331 0.76127 0.92493 0.94708 0.92501 0.90891 0.89506 0.89332 0.90825 0.86397 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.06 37.16 0.26 -0.99 16 2 C 0.01 0.06 0.79 -156.81 -0.12 -0.06 16 3 C -0.14 -1.19 8.22 37.15 0.31 -0.88 16 4 C 0.48 5.80 6.79 36.01 0.24 6.05 16 5 O -0.50 -8.00 15.86 -18.75 -0.30 -8.29 16 6 O -0.52 -4.54 13.23 -39.25 -0.52 -5.06 16 7 C -0.16 -2.23 4.38 -104.58 -0.46 -2.69 16 8 C -0.06 -0.83 8.97 -39.61 -0.36 -1.18 16 9 C -0.21 -3.44 9.30 -39.38 -0.37 -3.81 16 10 C 0.24 4.25 6.65 -83.78 -0.56 3.70 16 11 N -0.72 -13.55 5.63 -58.63 -0.33 -13.88 16 12 C 0.16 3.23 4.37 -4.04 -0.02 3.21 16 13 C -0.01 -0.26 0.79 -155.66 -0.12 -0.38 16 14 C -0.49 -13.08 9.31 -34.44 -0.32 -13.40 16 15 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 18 Si 0.88 21.25 24.95 -169.99 -4.24 17.01 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -5.76 5.69 56.52 0.32 -5.44 16 22 C -0.18 -3.44 9.96 -26.69 -0.27 -3.71 16 23 C -0.19 -3.89 7.31 -26.69 -0.20 -4.09 16 24 C -0.20 -3.36 9.90 -39.38 -0.39 -3.75 16 25 C -0.04 -0.54 7.92 -39.61 -0.31 -0.85 16 26 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.08 0.58 7.52 -51.93 -0.39 0.19 16 28 H 0.06 0.60 7.50 -51.93 -0.39 0.21 16 29 H 0.06 0.55 7.38 -51.93 -0.38 0.16 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.41 1.99 9.10 45.56 0.41 2.41 16 33 H 0.12 1.37 5.88 -52.49 -0.31 1.07 16 34 H 0.12 1.91 6.76 -52.49 -0.35 1.55 16 35 H 0.40 7.61 8.47 -40.82 -0.35 7.26 16 36 H 0.06 1.24 6.82 -51.93 -0.35 0.89 16 37 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 41 H 0.09 1.88 7.13 -51.93 -0.37 1.51 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.11 1.50 7.51 -52.48 -0.39 1.10 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -32.03 355.96 -7.90 -39.94 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.88 Total: 11.78 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.77 Total: -20.72 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.44 Total: -40.02 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.82 Total: -13.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.24 Total: 17.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.03 -7.90 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589641589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.599 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds