Wall clock time and date at job start Tue Mar 31 2020 09:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47467 * 2 1 4 4 C 1.50702 * 109.47033 * 120.00326 * 2 1 3 5 5 O 1.20830 * 119.99945 * 119.99755 * 4 2 1 6 6 O 1.34228 * 119.99828 * 299.99609 * 4 2 1 7 7 C 1.50702 * 109.46833 * 240.00154 * 2 1 3 8 8 C 1.38289 * 119.92756 * 359.72415 * 7 2 1 9 9 C 1.38102 * 120.07547 * 179.72363 * 8 7 2 10 10 C 1.38912 * 119.92070 * 0.55412 * 9 8 7 11 11 N 1.39680 * 120.07236 * 179.70520 * 10 9 8 12 12 C 1.46501 * 119.99675 * 354.75827 * 11 10 9 13 13 C 1.53001 * 109.46946 * 185.17151 * 12 11 10 14 14 C 1.50704 * 115.55242 * 65.19546 * 13 12 11 15 15 H 1.08000 * 119.99707 * 264.81998 * 14 13 12 16 16 C 1.37879 * 119.99832 * 84.81703 * 14 13 12 17 17 N 1.31509 * 119.99653 * 184.67333 * 16 14 13 18 18 Si 1.86801 * 120.00013 * 4.67833 * 16 14 13 19 19 H 1.48492 * 109.47435 * 94.52426 * 18 16 14 20 20 H 1.48506 * 109.46719 * 214.52380 * 18 16 14 21 21 H 1.48504 * 109.47037 * 334.52198 * 18 16 14 22 22 C 1.53000 * 117.49873 * 279.52911 * 13 12 11 23 23 C 1.53001 * 117.49936 * 210.86663 * 13 12 11 24 24 C 1.38909 * 119.85615 * 359.72349 * 10 9 8 25 25 C 1.38101 * 119.92094 * 359.97438 * 24 10 9 26 26 H 1.09005 * 109.47034 * 299.99772 * 1 2 3 27 27 H 1.09000 * 109.47128 * 60.00026 * 1 2 3 28 28 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47773 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47415 * 300.00460 * 3 2 1 31 31 H 1.09002 * 109.47225 * 59.99786 * 3 2 1 32 32 H 0.96700 * 116.99608 * 180.02562 * 6 4 2 33 33 H 1.07999 * 119.95679 * 359.97438 * 8 7 2 34 34 H 1.08000 * 120.03897 * 180.27681 * 9 8 7 35 35 H 0.96996 * 120.00157 * 174.76471 * 11 10 9 36 36 H 1.09005 * 109.47351 * 305.16562 * 12 11 10 37 37 H 1.08994 * 109.47087 * 65.17227 * 12 11 10 38 38 H 0.97010 * 119.99956 * 180.02562 * 17 16 14 39 39 H 1.09001 * 117.49893 * 359.97438 * 22 13 12 40 40 H 1.08998 * 117.50345 * 145.02423 * 22 13 12 41 41 H 1.08998 * 117.50202 * 214.97576 * 23 13 12 42 42 H 1.09002 * 117.49699 * 359.97438 * 23 13 12 43 43 H 1.08001 * 120.04161 * 180.02562 * 24 10 9 44 44 H 1.08004 * 119.96161 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6929 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.0323 -0.7104 -1.2305 8 6 1.1323 -1.2403 -2.1369 9 6 1.5891 -1.8869 -3.2684 10 6 2.9545 -2.0148 -3.4898 11 7 3.4201 -2.6736 -4.6301 12 6 2.4730 -3.3301 -5.5346 13 6 3.2436 -4.0795 -6.6235 14 6 4.0853 -5.2348 -6.1460 15 1 5.1349 -5.0886 -5.9381 16 6 3.5152 -6.4785 -5.9746 17 7 4.2259 -7.4638 -5.4712 18 14 1.7334 -6.7638 -6.4577 19 1 1.6757 -7.3080 -7.8380 20 1 1.1147 -7.7325 -5.5173 21 1 0.9932 -5.4776 -6.4013 22 6 3.7701 -3.2630 -7.8055 23 6 2.5811 -4.2081 -7.9966 24 6 3.8559 -1.4864 -2.5744 25 6 3.3922 -0.8355 -1.4481 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0541 -0.7407 3.2088 33 1 0.0709 -1.1448 -1.9616 34 1 0.8857 -2.2967 -3.9782 35 1 4.3704 -2.6965 -4.8229 36 1 1.8618 -4.0353 -4.9714 37 1 1.8307 -2.5796 -5.9952 38 1 3.8249 -8.3390 -5.3509 39 1 3.5671 -2.1921 -7.8076 40 1 4.7249 -3.5618 -8.2381 41 1 2.7543 -5.1281 -8.5548 42 1 1.5960 -3.7591 -8.1241 43 1 4.9181 -1.5837 -2.7437 44 1 4.0924 -0.4247 -0.7358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589641589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:43 Heat of formation + Delta-G solvation = -64.124993 kcal Electronic energy + Delta-G solvation = -24588.531853 eV Core-core repulsion = 21084.369083 eV Total energy + Delta-G solvation = -3504.162769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77058 -40.25528 -38.99551 -37.17416 -36.85430 -34.63032 -34.22250 -31.91923 -29.81851 -28.30695 -27.92135 -26.53080 -25.42951 -23.49936 -23.21826 -22.73493 -20.88149 -20.65074 -18.79191 -18.50523 -18.15098 -17.46145 -16.99544 -16.72255 -16.48186 -15.90428 -15.52481 -15.27225 -15.08478 -14.75725 -14.65558 -14.57138 -14.32618 -13.91874 -13.73592 -13.40997 -13.20671 -13.08450 -13.02765 -12.79533 -12.70193 -12.47650 -12.32307 -12.18271 -11.98008 -11.86228 -11.61481 -11.49644 -11.24190 -11.10655 -10.76687 -10.52262 -10.33437 -9.73980 -8.31180 -8.14255 -6.38200 0.62698 0.69637 1.27205 1.33733 1.37347 1.49223 2.19634 2.35863 2.58963 3.04918 3.08179 3.31681 3.58496 3.86310 4.03879 4.06568 4.17560 4.18634 4.34526 4.38944 4.41995 4.55055 4.58405 4.68811 4.73630 4.84683 4.85558 4.89783 4.90941 4.98318 5.01753 5.08233 5.19228 5.28793 5.32308 5.35021 5.47609 5.51500 5.58252 5.66593 5.68666 5.79049 6.07595 6.25521 6.59603 6.70152 6.96824 7.05610 7.31879 8.84441 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.003381 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.579893 B = 8278.487510 C = 8596.925557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.002 3.998 3 C -0.133 4.133 4 C 0.484 3.516 5 O -0.547 6.547 6 O -0.506 6.506 7 C -0.154 4.154 8 C -0.058 4.058 9 C -0.220 4.220 10 C 0.214 3.786 11 N -0.729 5.729 12 C 0.173 3.827 13 C -0.038 4.038 14 C -0.481 4.481 15 H 0.030 0.970 16 C 0.018 3.982 17 N -0.950 5.950 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.303 1.303 21 H -0.224 1.224 22 C -0.159 4.159 23 C -0.186 4.186 24 C -0.219 4.219 25 C -0.044 4.044 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.424 0.576 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.398 0.602 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.263 0.737 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 20.554 10.562 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 C -0.190 4.190 4 C 0.328 3.672 5 O -0.436 6.436 6 O -0.319 6.319 7 C -0.156 4.156 8 C -0.077 4.077 9 C -0.243 4.243 10 C 0.108 3.892 11 N -0.354 5.354 12 C 0.048 3.952 13 C -0.039 4.039 14 C -0.519 4.519 15 H 0.048 0.952 16 C -0.179 4.179 17 N -0.590 5.590 18 Si 0.762 3.238 19 H -0.196 1.196 20 H -0.231 1.231 21 H -0.146 1.146 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.242 4.242 25 C -0.063 4.063 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.285 0.715 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.232 0.768 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.681 20.229 10.109 25.010 hybrid contribution 0.803 -1.749 0.259 1.942 sum -9.878 18.480 10.368 23.379 Atomic orbital electron populations 1.21978 0.89724 1.03074 1.05061 1.19253 0.98826 0.96168 0.85689 1.21893 1.01247 0.91276 1.04633 1.23847 0.76073 0.81764 0.85559 1.90770 1.37376 1.27770 1.87720 1.84475 1.71963 1.58859 1.16609 1.19148 0.93106 1.06061 0.97334 1.21067 1.00355 0.94149 0.92105 1.20776 0.93231 1.08485 1.01818 1.18218 0.93723 0.90491 0.86733 1.44715 1.09456 1.57505 1.23720 1.20888 0.90665 0.93516 0.90122 1.19446 0.99948 0.97455 0.87096 1.20371 0.95013 0.92618 1.43893 0.95165 1.25854 1.02288 0.95661 0.94087 1.70064 1.39424 1.03083 1.46452 0.85909 0.80676 0.79526 0.77714 1.19650 1.23104 1.14631 1.22857 0.97300 0.96617 1.02847 1.23032 0.97463 1.01296 1.00561 1.20649 0.98835 1.07584 0.97123 1.20648 0.95388 0.95542 0.94692 0.89532 0.88935 0.92466 0.92717 0.89701 0.89576 0.71514 0.83243 0.86002 0.76812 0.94697 0.91992 0.92769 0.87816 0.90431 0.90612 0.87600 0.86559 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.06 71.98 0.51 -1.44 16 2 C 0.00 0.03 0.79 -53.68 -0.04 -0.01 16 3 C -0.13 -1.89 8.22 71.98 0.59 -1.30 16 4 C 0.48 10.76 6.79 71.24 0.48 11.25 16 5 O -0.55 -17.24 15.86 21.95 0.35 -16.89 16 6 O -0.51 -7.38 13.23 -51.40 -0.68 -8.06 16 7 C -0.15 -3.99 4.38 -19.84 -0.09 -4.08 16 8 C -0.06 -1.53 8.97 22.25 0.20 -1.33 16 9 C -0.22 -6.96 9.30 22.40 0.21 -6.75 16 10 C 0.21 7.59 6.65 38.21 0.25 7.84 16 11 N -0.73 -27.76 5.63 -339.41 -1.91 -29.68 16 12 C 0.17 6.72 4.37 86.38 0.38 7.10 16 13 C -0.04 -1.64 0.79 -52.93 -0.04 -1.69 16 14 C -0.48 -26.62 9.31 25.60 0.24 -26.38 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.02 1.06 5.47 84.66 0.46 1.52 16 17 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 18 Si 0.94 43.93 24.95 68.60 1.71 45.64 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 21 H -0.22 -9.24 5.69 99.48 0.57 -8.68 16 22 C -0.16 -5.78 9.96 30.62 0.30 -5.48 16 23 C -0.19 -6.98 7.31 30.62 0.22 -6.76 16 24 C -0.22 -7.32 9.90 22.40 0.22 -7.10 16 25 C -0.04 -1.30 7.92 22.25 0.18 -1.12 16 26 H 0.09 0.91 8.11 -2.38 -0.02 0.89 16 27 H 0.09 0.99 7.52 -2.39 -0.02 0.98 16 28 H 0.06 0.88 7.50 -2.39 -0.02 0.87 16 29 H 0.05 0.85 7.38 -2.39 -0.02 0.83 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.42 3.08 9.10 -74.06 -0.67 2.41 16 33 H 0.15 2.93 5.88 -2.91 -0.02 2.91 16 34 H 0.12 3.70 6.76 -2.91 -0.02 3.68 16 35 H 0.40 15.58 8.47 -92.71 -0.79 14.79 16 36 H 0.03 1.49 6.82 -2.38 -0.02 1.47 16 37 H 0.06 2.07 7.95 -2.39 -0.02 2.05 16 38 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 39 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.08 3.05 7.13 -2.39 -0.02 3.04 16 42 H 0.11 3.33 8.14 -2.39 -0.02 3.32 16 43 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.12 3.19 7.51 -2.91 -0.02 3.16 16 Total: -1.00 -72.88 355.96 3.27 -69.61 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.58 Total: 34.85 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.08 Total: -35.74 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.61 Total: -89.41 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.33 Total: -24.96 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.71 Total: 45.64 kcal Total: -72.88 3.27 -69.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589641589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.489 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds