Wall clock time and date at job start Tue Mar 31 2020 10:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47558 * 2 1 4 4 C 1.53003 * 109.46954 * 239.99823 * 2 1 3 5 5 C 1.50701 * 109.47050 * 60.00045 * 4 2 1 6 6 H 1.08003 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99932 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47199 * 60.00478 * 9 7 5 11 11 H 1.48506 * 109.46745 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47365 * 299.99844 * 9 7 5 13 13 C 1.53010 * 109.47258 * 120.00023 * 2 1 3 14 14 N 1.46895 * 109.46946 * 305.63850 * 13 2 1 15 15 C 1.47886 * 110.99897 * 278.26797 * 14 13 2 16 16 C 1.54611 * 102.63996 * 265.55559 * 15 14 13 17 17 C 1.51594 * 102.66784 * 334.25741 * 16 15 14 18 18 C 1.37411 * 131.54309 * 195.75435 * 17 16 15 19 19 C 1.39899 * 119.81110 * 179.65203 * 18 17 16 20 20 C 1.47382 * 120.21663 * 180.27740 * 19 18 17 21 21 O 1.21515 * 120.00268 * 359.97438 * 20 19 18 22 22 O 1.34762 * 119.99863 * 180.02562 * 20 19 18 23 23 C 1.39853 * 119.55794 * 0.29566 * 19 18 17 24 24 C 1.36372 * 120.25895 * 0.14067 * 23 19 18 25 25 C 1.39341 * 107.89335 * 16.22808 * 17 16 15 26 26 H 1.08998 * 109.46844 * 304.80284 * 1 2 3 27 27 H 1.08997 * 109.47217 * 64.80271 * 1 2 3 28 28 H 1.09002 * 109.47038 * 184.80766 * 1 2 3 29 29 H 1.08996 * 109.47290 * 171.99961 * 3 2 1 30 30 H 1.09004 * 109.47022 * 292.00035 * 3 2 1 31 31 H 1.09003 * 109.47243 * 51.99861 * 3 2 1 32 32 H 1.09001 * 109.47208 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47197 * 299.99841 * 4 2 1 34 34 H 0.97001 * 119.99926 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46839 * 185.63463 * 13 2 1 36 36 H 1.09000 * 109.46698 * 65.63889 * 13 2 1 37 37 H 1.09006 * 110.77691 * 23.84258 * 15 14 13 38 38 H 1.08997 * 110.78084 * 147.26718 * 15 14 13 39 39 H 1.09000 * 110.76090 * 92.79641 * 16 15 14 40 40 H 1.08996 * 110.76014 * 215.99359 * 16 15 14 41 41 H 1.07996 * 120.09428 * 359.92955 * 18 17 16 42 42 H 0.96698 * 117.00234 * 180.02562 * 22 20 19 43 43 H 1.08005 * 119.87058 * 180.15464 * 23 19 18 44 44 H 1.07999 * 119.74184 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6271 -1.5510 -3.8526 9 14 1.2489 0.3993 -5.2571 10 1 1.7441 1.7993 -5.2567 11 1 1.7438 -0.3008 -6.4697 12 1 -0.2361 0.3994 -5.2577 13 6 2.0400 -0.7213 1.2493 14 7 1.4424 -0.1118 2.4448 15 6 2.1750 1.1109 2.8388 16 6 3.1755 0.5814 3.8919 17 6 2.4768 -0.6550 4.4221 18 6 2.6911 -1.4097 5.5502 19 6 1.8796 -2.5195 5.8091 20 6 2.0977 -3.3315 7.0196 21 8 2.9849 -3.0382 7.7964 22 8 1.3137 -4.4000 7.2644 23 6 0.8605 -2.8534 4.9115 24 6 0.6602 -2.1044 3.7896 25 6 1.4686 -0.9959 3.5226 26 1 -0.3633 0.5865 0.8438 27 1 -0.3633 0.4375 -0.9298 28 1 -0.3633 -1.0241 0.0861 29 1 3.1206 1.4457 0.1430 30 1 1.7982 1.9133 -0.9529 31 1 1.5647 1.9960 0.8098 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7490 -1.2492 34 1 2.8614 -1.8824 -4.7336 35 1 3.1254 -0.6347 1.3011 36 1 1.7615 -1.7740 1.2002 37 1 2.7018 1.5380 1.9854 38 1 1.4980 1.8415 3.2816 39 1 4.1263 0.3229 3.4259 40 1 3.3227 1.3125 4.6868 41 1 3.4808 -1.1442 6.2374 42 1 1.4946 -4.9016 8.0710 43 1 0.2294 -3.7077 5.1077 44 1 -0.1290 -2.3700 3.1019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590654173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:01 Heat of formation + Delta-G solvation = -58.468241 kcal Electronic energy + Delta-G solvation = -24725.403203 eV Core-core repulsion = 21221.485729 eV Total energy + Delta-G solvation = -3503.917474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16902 -40.14796 -37.61174 -36.27321 -35.64064 -32.63786 -32.02534 -30.03768 -29.22338 -27.08548 -26.47134 -25.92668 -24.39480 -22.92171 -22.40699 -21.11700 -20.72129 -18.25707 -18.02866 -17.27800 -16.55655 -16.18223 -15.94606 -15.78955 -15.07299 -14.58675 -14.42375 -14.15025 -13.70690 -13.57057 -13.43547 -12.93318 -12.78366 -12.68442 -12.51883 -12.18582 -12.05498 -11.99481 -11.74651 -11.18188 -11.06497 -10.98103 -10.83614 -10.80908 -10.69750 -10.54198 -10.48015 -10.10075 -9.72487 -9.59918 -9.09027 -9.06744 -8.83773 -8.35504 -7.90634 -6.00164 -4.00721 0.52051 1.24725 2.35499 2.81920 3.32104 3.37238 3.38973 3.54663 3.72129 4.42215 4.46399 4.68929 4.82936 4.88753 4.99844 5.10926 5.17195 5.35602 5.45102 5.49710 5.58892 5.64325 5.72696 5.80337 5.88664 5.98765 6.04732 6.10578 6.13866 6.17620 6.25641 6.29688 6.39270 6.51764 6.60075 6.66685 6.77222 6.95511 7.14123 7.18289 7.24774 7.31234 7.64226 7.69397 7.77799 7.99192 8.42608 9.04062 9.62268 11.11388 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.002997 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.737011 B = 9339.360851 C = 9784.326858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.137 4.137 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.070 3.930 14 N -0.487 5.487 15 C 0.033 3.967 16 C -0.108 4.108 17 C -0.163 4.163 18 C -0.018 4.018 19 C -0.162 4.162 20 C 0.533 3.467 21 O -0.523 6.523 22 O -0.513 6.513 23 C -0.039 4.039 24 C -0.133 4.133 25 C 0.152 3.848 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.412 0.588 43 H 0.140 0.860 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -0.162 19.338 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.054 4.054 14 N -0.201 5.201 15 C -0.093 4.093 16 C -0.146 4.146 17 C -0.166 4.166 18 C -0.037 4.037 19 C -0.164 4.164 20 C 0.379 3.621 21 O -0.414 6.414 22 O -0.325 6.325 23 C -0.058 4.058 24 C -0.153 4.153 25 C 0.054 3.946 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.151 0.849 42 H 0.270 0.730 43 H 0.158 0.842 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.260 0.188 18.821 18.957 hybrid contribution 0.590 -0.198 -0.154 0.641 sum -1.670 -0.010 18.667 18.742 Atomic orbital electron populations 1.21602 0.94803 1.00338 1.00604 1.20637 0.96069 0.95129 0.93673 1.22049 0.98887 0.96780 1.01713 1.19111 0.95968 0.95210 0.90007 1.21168 1.30993 1.12020 0.90520 0.92248 1.25008 0.95337 0.95097 0.99058 1.69952 1.37091 1.23113 1.23489 0.86722 0.79213 0.79772 0.82670 1.20334 1.21431 1.20295 1.22540 0.96424 0.98595 0.87846 1.59833 1.52386 1.04377 1.03547 1.23698 0.94597 0.92377 0.98618 1.21721 0.99365 0.94334 0.99188 1.20975 0.98054 0.99937 0.97618 1.20357 0.96868 0.91414 0.95048 1.18742 1.02777 0.99095 0.95821 1.20778 0.77977 0.78157 0.85182 1.90882 1.32426 1.69814 1.48236 1.84577 1.58715 1.40835 1.48368 1.20913 0.94990 0.97971 0.91917 1.20288 1.00863 0.95461 0.98727 1.20106 0.91522 0.91341 0.91675 0.93928 0.92269 0.94334 0.94120 0.91322 0.93802 0.96851 0.96653 0.93045 0.93684 0.90912 0.87239 0.89570 0.89820 0.89630 0.84922 0.72960 0.84243 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 7.99 37.16 0.30 -1.83 16 2 C -0.05 -1.02 0.61 -154.50 -0.09 -1.11 16 3 C -0.14 -2.37 6.75 37.16 0.25 -2.11 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.44 7.48 -34.44 -0.26 -13.69 16 6 H 0.06 1.52 5.73 -52.48 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.07 1.14 4.02 -3.82 -0.02 1.12 16 14 N -0.49 -6.85 4.02 -168.99 -0.68 -7.53 16 15 C 0.03 0.40 5.51 -2.43 -0.01 0.39 16 16 C -0.11 -1.17 6.94 -26.60 -0.18 -1.35 16 17 C -0.16 -2.02 6.22 -104.07 -0.65 -2.67 16 18 C -0.02 -0.22 9.59 -39.26 -0.38 -0.59 16 19 C -0.16 -1.93 5.88 -104.95 -0.62 -2.54 16 20 C 0.53 6.12 8.26 34.45 0.28 6.40 16 21 O -0.52 -7.32 17.14 -19.28 -0.33 -7.65 16 22 O -0.51 -4.23 12.68 -40.66 -0.52 -4.74 16 23 C -0.04 -0.43 9.54 -39.65 -0.38 -0.81 16 24 C -0.13 -1.63 9.94 -39.68 -0.39 -2.02 16 25 C 0.15 2.04 5.44 -83.42 -0.45 1.59 16 26 H 0.04 0.71 7.63 -51.93 -0.40 0.31 16 27 H 0.06 1.18 6.48 -51.93 -0.34 0.84 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.67 7.51 -51.93 -0.39 0.28 16 30 H 0.07 1.32 6.40 -51.93 -0.33 0.99 16 31 H 0.04 0.65 6.03 -51.93 -0.31 0.33 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.04 0.73 7.85 -51.93 -0.41 0.32 16 36 H 0.07 1.23 7.84 -51.93 -0.41 0.83 16 37 H 0.11 1.33 4.43 -51.93 -0.23 1.10 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.13 1.51 7.66 -52.49 -0.40 1.11 16 42 H 0.41 1.50 9.11 45.56 0.42 1.92 16 43 H 0.14 1.25 7.60 -52.48 -0.40 0.85 16 44 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.22 351.11 -8.92 -40.14 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.59 Total: 0.99 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.81 Total: -17.09 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.06 Total: -33.05 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.85 Total: -12.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.22 -8.92 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590654173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.326 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds