Wall clock time and date at job start Tue Mar 31 2020 10:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47558 * 2 1 4 4 C 1.53003 * 109.46954 * 239.99823 * 2 1 3 5 5 C 1.50701 * 109.47050 * 60.00045 * 4 2 1 6 6 H 1.08003 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99932 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47199 * 60.00478 * 9 7 5 11 11 H 1.48506 * 109.46745 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47365 * 299.99844 * 9 7 5 13 13 C 1.53010 * 109.47258 * 120.00023 * 2 1 3 14 14 N 1.46895 * 109.46946 * 305.63850 * 13 2 1 15 15 C 1.47886 * 110.99897 * 278.26797 * 14 13 2 16 16 C 1.54611 * 102.63996 * 265.55559 * 15 14 13 17 17 C 1.51594 * 102.66784 * 334.25741 * 16 15 14 18 18 C 1.37411 * 131.54309 * 195.75435 * 17 16 15 19 19 C 1.39899 * 119.81110 * 179.65203 * 18 17 16 20 20 C 1.47382 * 120.21663 * 180.27740 * 19 18 17 21 21 O 1.21515 * 120.00268 * 359.97438 * 20 19 18 22 22 O 1.34762 * 119.99863 * 180.02562 * 20 19 18 23 23 C 1.39853 * 119.55794 * 0.29566 * 19 18 17 24 24 C 1.36372 * 120.25895 * 0.14067 * 23 19 18 25 25 C 1.39341 * 107.89335 * 16.22808 * 17 16 15 26 26 H 1.08998 * 109.46844 * 304.80284 * 1 2 3 27 27 H 1.08997 * 109.47217 * 64.80271 * 1 2 3 28 28 H 1.09002 * 109.47038 * 184.80766 * 1 2 3 29 29 H 1.08996 * 109.47290 * 171.99961 * 3 2 1 30 30 H 1.09004 * 109.47022 * 292.00035 * 3 2 1 31 31 H 1.09003 * 109.47243 * 51.99861 * 3 2 1 32 32 H 1.09001 * 109.47208 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47197 * 299.99841 * 4 2 1 34 34 H 0.97001 * 119.99926 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46839 * 185.63463 * 13 2 1 36 36 H 1.09000 * 109.46698 * 65.63889 * 13 2 1 37 37 H 1.09006 * 110.77691 * 23.84258 * 15 14 13 38 38 H 1.08997 * 110.78084 * 147.26718 * 15 14 13 39 39 H 1.09000 * 110.76090 * 92.79641 * 16 15 14 40 40 H 1.08996 * 110.76014 * 215.99359 * 16 15 14 41 41 H 1.07996 * 120.09428 * 359.92955 * 18 17 16 42 42 H 0.96698 * 117.00234 * 180.02562 * 22 20 19 43 43 H 1.08005 * 119.87058 * 180.15464 * 23 19 18 44 44 H 1.07999 * 119.74184 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6271 -1.5510 -3.8526 9 14 1.2489 0.3993 -5.2571 10 1 1.7441 1.7993 -5.2567 11 1 1.7438 -0.3008 -6.4697 12 1 -0.2361 0.3994 -5.2577 13 6 2.0400 -0.7213 1.2493 14 7 1.4424 -0.1118 2.4448 15 6 2.1750 1.1109 2.8388 16 6 3.1755 0.5814 3.8919 17 6 2.4768 -0.6550 4.4221 18 6 2.6911 -1.4097 5.5502 19 6 1.8796 -2.5195 5.8091 20 6 2.0977 -3.3315 7.0196 21 8 2.9849 -3.0382 7.7964 22 8 1.3137 -4.4000 7.2644 23 6 0.8605 -2.8534 4.9115 24 6 0.6602 -2.1044 3.7896 25 6 1.4686 -0.9959 3.5226 26 1 -0.3633 0.5865 0.8438 27 1 -0.3633 0.4375 -0.9298 28 1 -0.3633 -1.0241 0.0861 29 1 3.1206 1.4457 0.1430 30 1 1.7982 1.9133 -0.9529 31 1 1.5647 1.9960 0.8098 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7490 -1.2492 34 1 2.8614 -1.8824 -4.7336 35 1 3.1254 -0.6347 1.3011 36 1 1.7615 -1.7740 1.2002 37 1 2.7018 1.5380 1.9854 38 1 1.4980 1.8415 3.2816 39 1 4.1263 0.3229 3.4259 40 1 3.3227 1.3125 4.6868 41 1 3.4808 -1.1442 6.2374 42 1 1.4946 -4.9016 8.0710 43 1 0.2294 -3.7077 5.1077 44 1 -0.1290 -2.3700 3.1019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590654173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:00 Heat of formation + Delta-G solvation = -76.408987 kcal Electronic energy + Delta-G solvation = -24726.181173 eV Core-core repulsion = 21221.485729 eV Total energy + Delta-G solvation = -3504.695443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14637 -41.05050 -38.84099 -37.11587 -36.89570 -34.47649 -33.16775 -31.11684 -30.18889 -28.94857 -27.90136 -27.21804 -25.45597 -24.64184 -23.35608 -22.07358 -21.67974 -19.64887 -19.01784 -18.33352 -18.13693 -17.52893 -16.96529 -16.65699 -16.43758 -16.04598 -15.46971 -15.25661 -15.12423 -14.78588 -14.60809 -14.16292 -14.00844 -13.86382 -13.68945 -13.58877 -13.36160 -13.15700 -12.80443 -12.66192 -12.58993 -12.38457 -12.27442 -12.17446 -12.03762 -11.93670 -11.75786 -11.69185 -11.31253 -10.98051 -10.85348 -10.48171 -10.35407 -9.96924 -8.94183 -8.12492 -6.19069 -0.42159 0.33855 1.42716 1.44294 1.44433 1.51589 2.05512 2.44416 2.58550 2.76263 3.21837 3.51919 3.77380 3.93371 3.99930 4.07743 4.09848 4.17089 4.26215 4.37544 4.41681 4.58438 4.66837 4.74266 4.80475 4.82710 4.91382 4.98000 5.08803 5.12019 5.15513 5.20071 5.24178 5.26552 5.34357 5.52906 5.55960 5.56833 5.59428 5.62619 5.65888 5.83337 5.94020 5.97256 6.20408 6.37713 6.95779 6.97036 7.48159 8.99575 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.002997 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.737011 B = 9339.360851 C = 9784.326858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 C -0.130 4.130 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.083 3.917 14 N -0.490 5.490 15 C 0.030 3.970 16 C -0.104 4.104 17 C -0.164 4.164 18 C -0.026 4.026 19 C -0.168 4.168 20 C 0.540 3.460 21 O -0.553 6.553 22 O -0.503 6.503 23 C -0.033 4.033 24 C -0.139 4.139 25 C 0.128 3.872 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.074 0.926 32 H -0.014 1.014 33 H -0.016 1.016 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.433 0.567 43 H 0.162 0.838 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 0.812 20.731 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.050 4.050 3 C -0.187 4.187 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.194 1.194 13 C -0.041 4.041 14 N -0.205 5.205 15 C -0.095 4.095 16 C -0.142 4.142 17 C -0.167 4.167 18 C -0.045 4.045 19 C -0.170 4.170 20 C 0.387 3.613 21 O -0.446 6.446 22 O -0.317 6.317 23 C -0.051 4.051 24 C -0.159 4.159 25 C 0.030 3.970 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.155 0.845 42 H 0.295 0.705 43 H 0.179 0.821 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.192 1.156 20.247 20.529 hybrid contribution 0.855 -0.601 -0.480 1.150 sum -2.337 0.555 19.766 19.912 Atomic orbital electron populations 1.21497 0.94237 1.00179 1.00467 1.20463 0.96381 0.95792 0.92366 1.21981 0.99501 0.95544 1.01663 1.18980 0.94091 0.94064 0.92497 1.21577 1.30217 1.11954 0.91341 0.91475 1.25884 0.95712 0.95876 1.02482 1.70097 1.38832 1.24912 1.24063 0.85672 0.78918 0.78856 0.78649 1.19229 1.21553 1.19404 1.22184 0.96141 0.97627 0.88192 1.59768 1.52728 1.05036 1.02984 1.23786 0.95064 0.91751 0.98940 1.21740 0.98815 0.94179 0.99438 1.21138 0.97831 1.00343 0.97356 1.20483 0.97184 0.91664 0.95149 1.18953 1.02767 0.99090 0.96173 1.20674 0.77617 0.78458 0.84588 1.90876 1.33769 1.70776 1.49148 1.84526 1.57583 1.39863 1.49718 1.21101 0.94768 0.98177 0.91086 1.20475 1.00888 0.95296 0.99193 1.20248 0.92724 0.92198 0.91808 0.91651 0.94147 0.94964 0.93645 0.93518 0.90705 0.99593 0.99773 0.93202 0.94060 0.92234 0.87447 0.88034 0.89820 0.87403 0.84486 0.70468 0.82094 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.85 7.99 71.98 0.58 -3.27 16 2 C -0.05 -1.85 0.61 -52.18 -0.03 -1.88 16 3 C -0.13 -4.34 6.75 71.98 0.49 -3.86 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.53 7.48 25.60 0.19 -27.34 16 6 H 0.07 3.44 5.73 -2.91 -0.02 3.42 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.08 2.71 4.02 86.31 0.35 3.05 16 14 N -0.49 -13.09 4.02 -688.55 -2.77 -15.86 16 15 C 0.03 0.66 5.51 86.66 0.48 1.13 16 16 C -0.10 -2.03 6.94 30.68 0.21 -1.82 16 17 C -0.16 -3.82 6.22 -19.51 -0.12 -3.94 16 18 C -0.03 -0.59 9.59 22.48 0.22 -0.38 16 19 C -0.17 -3.71 5.88 -20.08 -0.12 -3.83 16 20 C 0.54 11.43 8.26 70.23 0.58 12.01 16 21 O -0.55 -14.78 17.14 19.79 0.34 -14.44 16 22 O -0.50 -7.01 12.68 -56.73 -0.72 -7.73 16 23 C -0.03 -0.66 9.54 22.23 0.21 -0.45 16 24 C -0.14 -3.20 9.94 22.21 0.22 -2.98 16 25 C 0.13 3.28 5.44 38.57 0.21 3.49 16 26 H 0.06 2.05 7.63 -2.39 -0.02 2.03 16 27 H 0.04 1.59 6.48 -2.39 -0.02 1.57 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.45 7.51 -2.39 -0.02 1.43 16 30 H 0.05 1.76 6.40 -2.38 -0.02 1.74 16 31 H 0.07 2.03 6.03 -2.39 -0.01 2.02 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 33 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 34 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.04 1.35 7.85 -2.39 -0.02 1.33 16 36 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 37 H 0.11 2.36 4.43 -2.38 -0.01 2.35 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.14 2.96 7.66 -2.91 -0.02 2.94 16 42 H 0.43 2.01 9.11 -74.06 -0.67 1.33 16 43 H 0.16 2.47 7.60 -2.91 -0.02 2.45 16 44 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -68.03 351.11 3.55 -64.48 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.35 Total: 11.66 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.04 Total: -27.58 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.49 Total: -72.03 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.38 Total: -22.18 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.03 3.55 -64.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590654173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.928 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds