Wall clock time and date at job start Tue Mar 31 2020 10:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38851 * 119.99965 * 180.02562 * 14 13 2 16 16 N 1.32438 * 120.24607 * 359.97438 * 15 14 13 17 17 N 1.28287 * 122.18425 * 179.97438 * 16 15 14 18 18 C 1.31871 * 122.58557 * 0.02562 * 17 16 15 19 19 C 1.38536 * 120.13264 * 359.97438 * 18 17 16 20 20 C 1.39734 * 117.91102 * 359.73128 * 19 18 17 21 21 C 1.48360 * 121.16236 * 180.26604 * 20 19 18 22 22 N 1.34079 * 126.67709 * 179.97438 * 21 20 19 23 23 N 1.28991 * 107.26421 * 179.83357 * 22 21 20 24 24 N 1.28731 * 108.94843 * 0.43848 * 23 22 21 25 25 H 0.97006 * 125.33350 * 179.72671 * 24 23 22 26 26 N 1.28871 * 109.33174 * 359.71629 * 24 23 22 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 39 39 H 1.08002 * 119.93483 * 180.02562 * 18 17 16 40 40 H 1.07999 * 121.04054 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8877 -0.5048 3.7064 16 7 2.6487 -1.5812 3.8336 17 7 2.9820 -2.0509 4.9799 18 6 2.5934 -1.5002 6.1133 19 6 1.7937 -0.3690 6.0987 20 6 1.4280 0.1574 4.8571 21 6 0.5786 1.3697 4.7573 22 7 0.1639 1.9664 3.6305 23 7 -0.5530 2.9815 3.9764 24 7 -0.5936 3.0461 5.2615 25 1 -1.0646 3.7212 5.7747 26 7 0.0894 2.0733 5.7593 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 0.9939 0.7578 2.3565 39 1 2.8998 -1.9314 7.0550 40 1 1.4673 0.0942 7.0181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603139327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:06 Heat of formation + Delta-G solvation = 178.601788 kcal Electronic energy + Delta-G solvation = -24527.108402 eV Core-core repulsion = 20994.516214 eV Total energy + Delta-G solvation = -3532.592188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.82302 -40.93447 -37.83551 -35.49224 -34.41312 -34.33830 -32.35970 -32.14636 -30.33891 -27.00581 -26.52993 -26.40608 -25.75395 -24.77077 -23.53856 -22.64753 -22.18051 -19.78619 -18.31937 -17.53241 -17.50591 -17.11494 -16.85135 -16.21901 -15.24894 -14.94113 -14.62258 -14.45485 -13.93368 -13.89601 -13.67054 -12.96346 -12.72884 -12.55073 -12.47067 -11.99641 -11.97171 -11.63612 -11.52990 -11.27492 -11.14585 -10.94276 -10.80289 -10.61750 -10.44884 -10.33567 -10.19605 -9.91379 -9.73480 -9.65658 -9.12736 -8.87360 -8.29960 -7.83969 -5.94342 -3.95088 0.20678 0.80685 1.19540 1.86610 1.99621 3.12001 3.36274 3.37150 3.41255 3.43417 3.67403 3.70976 4.22974 4.50123 4.61956 4.73380 4.82867 4.95285 5.12865 5.41193 5.53904 5.57756 5.65012 5.70192 5.88796 5.99818 6.02844 6.29987 6.32743 6.35432 6.49304 6.72692 6.73085 7.09180 7.15260 7.15969 7.27867 7.64714 7.70526 7.83367 7.89202 8.04803 8.47366 8.89568 9.09368 9.67551 11.17133 Molecular weight = 303.15amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003761 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.047561 B = 7443.976644 C = 8778.644110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.683 5.683 15 C 0.378 3.622 16 N -0.296 5.296 17 N -0.178 5.178 18 C -0.039 4.039 19 C -0.030 4.030 20 C -0.102 4.102 21 C 0.234 3.766 22 N -0.278 5.278 23 N -0.033 5.033 24 N -0.224 5.224 25 H 0.477 0.523 26 N -0.292 5.292 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.424 0.576 39 H 0.173 0.827 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 7.712 23.342 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.186 4.186 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.005 3.995 14 N -0.318 5.318 15 C 0.131 3.869 16 N -0.151 5.151 17 N -0.022 5.022 18 C -0.207 4.207 19 C -0.062 4.062 20 C -0.122 4.122 21 C -0.046 4.046 22 N -0.151 5.151 23 N -0.028 5.028 24 N -0.070 5.070 25 H 0.332 0.668 26 N -0.144 5.144 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.270 0.730 39 H 0.190 0.810 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.804 6.841 21.854 23.398 hybrid contribution -1.424 2.016 0.418 2.503 sum -6.228 8.857 22.272 24.764 Atomic orbital electron populations 1.21773 0.95292 1.01049 1.00492 1.20903 0.95540 0.95890 0.94849 1.21772 1.00363 0.95976 1.00504 1.19083 0.96375 0.95206 0.89339 1.21159 1.31109 1.12059 0.90531 0.92316 1.24998 0.95351 0.95087 0.98992 1.69958 1.36935 1.23068 1.23466 0.86725 0.79145 0.79787 0.82727 1.20351 1.21425 1.20358 1.21810 0.99153 0.96101 0.82442 1.45655 1.52680 1.31962 1.01516 1.20168 0.89720 0.90376 0.86590 1.73262 1.14969 1.10345 1.16548 1.72639 1.12757 1.22419 0.94433 1.23845 1.01055 0.96422 0.99364 1.22211 0.92774 0.94216 0.96975 1.17710 1.04914 0.95084 0.94467 1.23218 0.99372 0.97232 0.84808 1.75620 1.11174 1.03519 1.24793 1.78966 1.13939 1.14288 0.95591 1.47708 1.33460 1.20774 1.05063 0.66793 1.74893 1.12142 1.01162 1.26227 0.94977 0.91412 0.93458 0.93459 0.91422 0.94946 0.96250 0.96252 0.93036 0.91319 0.91323 0.72985 0.80998 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.05 37.16 0.30 -2.16 16 2 C -0.07 -1.43 0.54 -154.51 -0.08 -1.52 16 3 C -0.13 -2.46 8.05 37.16 0.30 -2.16 16 4 C 0.04 0.94 4.04 -27.88 -0.11 0.82 16 5 C -0.51 -13.81 7.65 -34.44 -0.26 -14.08 16 6 H 0.06 1.54 5.68 -52.48 -0.30 1.24 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.13 2.35 4.61 -4.04 -0.02 2.34 16 14 N -0.68 -11.23 5.05 -60.07 -0.30 -11.54 16 15 C 0.38 5.88 7.58 -154.62 -1.17 4.71 16 16 N -0.30 -4.91 10.74 31.39 0.34 -4.57 16 17 N -0.18 -2.59 11.48 30.53 0.35 -2.24 16 18 C -0.04 -0.40 11.29 -17.42 -0.20 -0.60 16 19 C -0.03 -0.30 9.89 -38.91 -0.38 -0.68 16 20 C -0.10 -1.30 5.94 -104.32 -0.62 -1.92 16 21 C 0.23 2.85 7.94 -156.29 -1.24 1.61 16 22 N -0.28 -3.69 9.62 32.14 0.31 -3.38 16 23 N -0.03 -0.35 13.47 60.35 0.81 0.46 16 24 N -0.22 -1.60 7.90 60.35 0.48 -1.13 16 25 H 0.48 0.95 8.96 -340.35 -3.05 -2.10 16 26 N -0.29 -2.75 12.22 32.16 0.39 -2.35 16 27 H 0.03 0.55 6.86 -51.93 -0.36 0.19 16 28 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 32 H 0.03 0.55 6.86 -51.93 -0.36 0.19 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.42 6.78 2.90 -40.82 -0.12 6.67 16 39 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.15 1.00 8.01 -52.49 -0.42 0.57 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -33.04 333.38 -7.86 -40.89 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.38 Total: 0.40 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.59 Total: -12.14 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 3.11 Total: -50.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.04 -7.86 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.496 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds