Wall clock time and date at job start Tue Mar 31 2020 10:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38851 * 119.99965 * 180.02562 * 14 13 2 16 16 N 1.32438 * 120.24607 * 359.97438 * 15 14 13 17 17 N 1.28287 * 122.18425 * 179.97438 * 16 15 14 18 18 C 1.31871 * 122.58557 * 0.02562 * 17 16 15 19 19 C 1.38536 * 120.13264 * 359.97438 * 18 17 16 20 20 C 1.39734 * 117.91102 * 359.73128 * 19 18 17 21 21 C 1.48360 * 121.16236 * 180.26604 * 20 19 18 22 22 N 1.34079 * 126.67709 * 179.97438 * 21 20 19 23 23 N 1.28991 * 107.26421 * 179.83357 * 22 21 20 24 24 N 1.28731 * 108.94843 * 0.43848 * 23 22 21 25 25 H 0.97006 * 125.33350 * 179.72671 * 24 23 22 26 26 N 1.28871 * 109.33174 * 359.71629 * 24 23 22 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 39 39 H 1.08002 * 119.93483 * 180.02562 * 18 17 16 40 40 H 1.07999 * 121.04054 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8877 -0.5048 3.7064 16 7 2.6487 -1.5812 3.8336 17 7 2.9820 -2.0509 4.9799 18 6 2.5934 -1.5002 6.1133 19 6 1.7937 -0.3690 6.0987 20 6 1.4280 0.1574 4.8571 21 6 0.5786 1.3697 4.7573 22 7 0.1639 1.9664 3.6305 23 7 -0.5530 2.9815 3.9764 24 7 -0.5936 3.0461 5.2615 25 1 -1.0646 3.7212 5.7747 26 7 0.0894 2.0733 5.7593 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 0.9939 0.7578 2.3565 39 1 2.8998 -1.9314 7.0550 40 1 1.4673 0.0942 7.0181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603139327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:06 Heat of formation + Delta-G solvation = 155.795784 kcal Electronic energy + Delta-G solvation = -24528.097344 eV Core-core repulsion = 20994.516214 eV Total energy + Delta-G solvation = -3533.581130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.60891 -41.94379 -39.34089 -36.64830 -35.52228 -35.19711 -34.30845 -33.03669 -31.54587 -28.97604 -27.99760 -27.76837 -26.80612 -25.71428 -25.03444 -23.73569 -23.45304 -20.59121 -19.79875 -18.66856 -18.38982 -18.27980 -18.15352 -17.74729 -16.48713 -16.39108 -16.06003 -15.43477 -15.42032 -15.06714 -14.84392 -14.34173 -14.32788 -14.08282 -13.93283 -13.38899 -12.97492 -12.80715 -12.74391 -12.68203 -12.44578 -12.36805 -12.33439 -12.21495 -12.10967 -11.98109 -11.84317 -11.39654 -11.01837 -10.85251 -10.77457 -10.60183 -10.47907 -9.01857 -8.11236 -6.18766 -0.67439 0.02405 0.24710 1.10327 1.30304 1.43305 1.45602 1.52854 2.05062 2.44247 2.47931 2.69520 2.85903 3.22763 3.27247 3.70014 3.87724 3.98575 4.01294 4.09275 4.12310 4.23432 4.31394 4.66709 4.74130 4.74241 4.76535 4.78066 4.94872 5.09923 5.11468 5.26303 5.42656 5.47340 5.50018 5.54027 5.57609 5.80442 5.90871 5.96608 6.34770 6.58085 6.95049 7.00467 7.48296 7.89867 9.01042 Molecular weight = 303.15amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003761 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.047561 B = 7443.976644 C = 8778.644110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.044 3.956 5 C -0.516 4.516 6 H 0.069 0.931 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.268 1.268 13 C 0.147 3.853 14 N -0.691 5.691 15 C 0.359 3.641 16 N -0.339 5.339 17 N -0.219 5.219 18 C -0.016 4.016 19 C -0.012 4.012 20 C -0.103 4.103 21 C 0.218 3.782 22 N -0.311 5.311 23 N -0.042 5.042 24 N -0.189 5.189 25 H 0.498 0.502 26 N -0.272 5.272 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.055 0.945 33 H -0.010 1.010 34 H -0.010 1.010 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.425 0.575 39 H 0.218 0.782 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 9.774 26.202 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.007 3.993 5 C -0.554 4.554 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.022 3.978 14 N -0.330 5.330 15 C 0.113 3.887 16 N -0.193 5.193 17 N -0.060 5.060 18 C -0.186 4.186 19 C -0.043 4.043 20 C -0.122 4.122 21 C -0.063 4.063 22 N -0.184 5.184 23 N -0.037 5.037 24 N -0.042 5.042 25 H 0.359 0.641 26 N -0.126 5.126 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.272 0.728 39 H 0.235 0.765 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.263 8.910 24.748 27.039 hybrid contribution -0.997 1.412 -0.164 1.737 sum -7.260 10.323 24.584 27.634 Atomic orbital electron populations 1.21663 0.94182 1.00819 1.01034 1.20705 0.96310 0.96110 0.93369 1.21662 0.99901 0.95095 1.01041 1.18929 0.94446 0.94208 0.91763 1.21546 1.30556 1.12114 0.91211 0.91324 1.25904 0.95630 0.95849 1.02513 1.70113 1.38590 1.24882 1.24132 0.85624 0.78926 0.78771 0.78471 1.19269 1.21449 1.19276 1.21311 0.98045 0.95321 0.83083 1.45320 1.54056 1.32393 1.01198 1.20296 0.90552 0.90956 0.86895 1.73155 1.16370 1.11495 1.18234 1.72560 1.14543 1.23815 0.95117 1.24636 0.98718 0.95573 0.99652 1.22704 0.91025 0.93301 0.97278 1.17898 1.04581 0.95186 0.94563 1.23151 1.00267 0.97657 0.85194 1.75564 1.12321 1.04532 1.25962 1.78919 1.14102 1.13951 0.96746 1.47800 1.31754 1.20165 1.04450 0.64132 1.74849 1.11549 1.00960 1.25222 0.92632 0.92451 0.94114 0.94127 0.92461 0.92608 0.99161 0.99156 0.93130 0.92871 0.92884 0.72760 0.76510 0.78674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.05 71.98 0.58 -4.05 16 2 C -0.06 -2.69 0.54 -52.18 -0.03 -2.72 16 3 C -0.12 -4.63 8.05 71.98 0.58 -4.05 16 4 C 0.04 2.33 4.04 29.85 0.12 2.45 16 5 C -0.52 -28.65 7.65 25.60 0.20 -28.46 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C 0.15 5.71 4.61 86.38 0.40 6.11 16 14 N -0.69 -23.16 5.05 -343.97 -1.74 -24.89 16 15 C 0.36 11.20 7.58 133.44 1.01 12.21 16 16 N -0.34 -11.53 10.74 -54.59 -0.59 -12.12 16 17 N -0.22 -6.22 11.48 -57.34 -0.66 -6.87 16 18 C -0.02 -0.28 11.29 84.76 0.96 0.67 16 19 C -0.01 -0.19 9.89 22.70 0.22 0.04 16 20 C -0.10 -2.44 5.94 -19.67 -0.12 -2.55 16 21 C 0.22 4.79 7.94 137.33 1.09 5.88 16 22 N -0.31 -7.75 9.62 -52.22 -0.50 -8.25 16 23 N -0.04 -0.81 13.47 37.02 0.50 -0.31 16 24 N -0.19 -2.08 7.90 37.02 0.29 -1.79 16 25 H 0.50 0.10 8.96 -347.52 -3.12 -3.01 16 26 N -0.27 -4.14 12.22 -52.17 -0.64 -4.78 16 27 H 0.05 1.88 6.86 -2.39 -0.02 1.86 16 28 H 0.06 2.31 6.62 -2.39 -0.02 2.30 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 2.31 6.62 -2.38 -0.02 2.29 16 32 H 0.06 1.89 6.86 -2.39 -0.02 1.87 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.43 13.54 2.90 -92.71 -0.27 13.27 16 39 H 0.22 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.20 1.41 8.01 -2.91 -0.02 1.39 16 Total: -1.00 -75.40 333.38 2.18 -73.23 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -2.28 Total: 10.74 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 5.47 Total: -14.11 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.05 Total: -116.48 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.40 2.18 -73.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.023 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds