Wall clock time and date at job start Tue Mar 31 2020 10:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46618 * 2 1 4 4 C 1.52996 * 109.47179 * 240.00122 * 2 1 3 5 5 C 1.50701 * 109.47371 * 59.99927 * 4 2 1 6 6 H 1.07994 * 119.99839 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99948 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99975 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00092 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47083 * 89.99987 * 9 7 5 11 11 H 1.48496 * 109.47002 * 209.99653 * 9 7 5 12 12 H 1.48498 * 109.47272 * 329.99840 * 9 7 5 13 13 C 1.53003 * 109.46840 * 119.99832 * 2 1 3 14 14 N 1.46497 * 109.47210 * 300.00017 * 13 2 1 15 15 C 1.39082 * 119.99999 * 179.97438 * 14 13 2 16 16 C 1.39290 * 120.10113 * 0.28911 * 15 14 13 17 17 C 1.39646 * 117.77158 * 180.21367 * 16 15 14 18 18 C 1.48471 * 121.09651 * 179.78609 * 17 16 15 19 19 N 1.34051 * 126.67166 * 359.40018 * 18 17 16 20 20 N 1.28991 * 107.26519 * 180.26320 * 19 18 17 21 21 N 1.28727 * 108.94656 * 0.02562 * 20 19 18 22 22 H 0.96997 * 125.34472 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.31728 * 359.97438 * 21 20 19 24 24 C 1.39881 * 117.81020 * 359.51242 * 17 16 15 25 25 N 1.31663 * 119.83913 * 0.25007 * 24 17 16 26 26 N 1.28290 * 122.41627 * 0.02562 * 25 24 17 27 27 H 1.09002 * 109.47607 * 299.99924 * 1 2 3 28 28 H 1.08999 * 109.47370 * 60.00090 * 1 2 3 29 29 H 1.09011 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47095 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47633 * 299.99752 * 3 2 1 32 32 H 1.09006 * 109.47296 * 60.00452 * 3 2 1 33 33 H 1.09000 * 109.46830 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47160 * 299.99387 * 4 2 1 35 35 H 0.97005 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46516 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47021 * 60.00194 * 13 2 1 38 38 H 0.97003 * 120.00488 * 0.02562 * 14 13 2 39 39 H 1.07999 * 121.11490 * 359.97438 * 16 15 14 40 40 H 1.07992 * 120.07874 * 180.27851 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8057 9 14 2.9452 -2.0004 -3.9033 10 1 2.0867 -3.2111 -3.9493 11 1 3.7376 -1.9076 -5.1557 12 1 3.8652 -2.0898 -2.7410 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8871 -0.5061 3.7087 16 6 2.6922 -1.6352 3.8390 17 6 2.9951 -2.0730 5.1300 18 6 3.8429 -3.2710 5.3544 19 7 4.3889 -4.0532 4.4125 20 7 5.0436 -4.9838 5.0201 21 7 4.9280 -4.8148 6.2909 22 1 5.3263 -5.3805 6.9708 23 7 4.2001 -3.7759 6.5184 24 6 2.4782 -1.3422 6.2049 25 7 1.7295 -0.2833 5.9775 26 7 1.4460 0.1168 4.7920 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8901 33 1 3.1300 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.6677 -0.1928 -5.6868 36 1 3.1299 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9936 0.7579 2.3565 39 1 3.0665 -2.1570 2.9706 40 1 2.6932 -1.6455 7.2188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603139704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:09 Heat of formation + Delta-G solvation = 177.376390 kcal Electronic energy + Delta-G solvation = -23822.816839 eV Core-core repulsion = 20290.171514 eV Total energy + Delta-G solvation = -3532.645325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.89815 -41.03612 -38.13431 -35.26202 -35.07565 -34.37046 -32.40765 -32.03105 -30.55882 -27.79195 -26.59105 -26.54216 -25.80529 -25.13406 -23.75215 -22.59774 -21.84835 -19.83038 -18.55831 -17.57768 -17.56004 -17.45892 -16.84411 -16.56704 -15.35848 -15.15651 -14.62610 -14.45306 -14.27416 -14.02246 -13.55441 -13.38495 -12.82514 -12.75156 -12.74518 -12.31336 -12.04029 -11.70033 -11.62800 -11.47190 -11.25331 -11.19670 -11.02763 -10.80423 -10.62817 -10.56051 -9.99016 -9.83774 -9.82801 -9.79647 -9.57241 -9.05136 -8.57009 -8.03782 -6.07131 -4.05010 0.09949 0.75190 1.05122 1.78479 1.95997 2.96282 3.14220 3.28515 3.37105 3.39126 3.58367 3.71475 4.31406 4.42118 4.44230 4.69223 4.72083 4.89950 5.07844 5.17790 5.23816 5.37298 5.41105 5.58216 5.79564 5.82592 5.92610 5.94823 5.99392 6.09312 6.26818 6.49051 6.55591 6.79769 6.95484 6.97987 7.02337 7.12541 7.29215 7.54830 7.69924 7.74257 8.49335 8.75636 8.97108 9.54959 11.05602 Molecular weight = 303.15amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.003442 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.065060 B = 8132.781949 C = 9703.489404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.131 4.131 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.123 3.877 14 N -0.697 5.697 15 C 0.353 3.647 16 C -0.137 4.137 17 C 0.023 3.977 18 C 0.217 3.783 19 N -0.256 5.256 20 N -0.043 5.043 21 N -0.224 5.224 22 H 0.478 0.522 23 N -0.281 5.281 24 C 0.007 3.993 25 N -0.195 5.195 26 N -0.303 5.303 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 -8.044 22.985 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 C -0.188 4.188 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.329 5.329 15 C 0.110 3.890 16 C -0.173 4.173 17 C 0.009 3.991 18 C -0.063 4.063 19 N -0.129 5.129 20 N -0.039 5.039 21 N -0.070 5.070 22 H 0.332 0.668 23 N -0.133 5.133 24 C -0.165 4.165 25 N -0.034 5.034 26 N -0.157 5.157 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.177 0.823 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.267 -7.407 23.006 24.736 hybrid contribution 1.315 -1.897 -0.337 2.332 sum 6.581 -9.303 22.669 25.373 Atomic orbital electron populations 1.21795 0.94539 1.01360 1.01120 1.20659 0.96050 0.96022 0.93264 1.21790 1.00435 0.95444 1.01116 1.19600 0.96284 0.95481 0.92556 1.21059 1.31941 1.13460 0.88563 0.90340 1.24999 0.95681 0.96737 0.95977 1.69899 1.45833 1.40518 0.97917 0.86866 0.81301 0.83913 0.77713 1.20358 1.21491 1.18982 1.21906 0.98753 0.96167 0.83237 1.44844 1.54815 1.32531 1.00711 1.20005 0.90310 0.89837 0.88882 1.21913 1.00023 0.97440 0.97971 1.18061 0.95628 0.90920 0.94469 1.23304 1.00397 0.98062 0.84581 1.76184 1.09225 1.01418 1.26049 1.78997 1.16246 1.18181 0.90439 1.47779 1.32518 1.18876 1.07861 0.66768 1.74916 1.11364 1.01358 1.25656 1.23977 0.98406 0.94300 0.99810 1.72770 1.08014 1.09981 1.12671 1.72894 1.22636 1.26711 0.93438 0.94702 0.90735 0.93362 0.93360 0.90728 0.94705 0.96306 0.96757 0.92747 0.91626 0.91629 0.74870 0.82274 0.80922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.01 0.54 -154.51 -0.08 -1.10 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.31 8.20 -34.44 -0.28 -13.59 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 9 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.12 1.75 3.81 -4.04 -0.02 1.73 16 14 N -0.70 -9.21 5.13 -60.33 -0.31 -9.52 16 15 C 0.35 4.76 7.74 -154.78 -1.20 3.56 16 16 C -0.14 -1.68 9.10 -38.66 -0.35 -2.03 16 17 C 0.02 0.27 5.92 -104.54 -0.62 -0.35 16 18 C 0.22 2.35 7.98 -156.29 -1.25 1.11 16 19 N -0.26 -3.01 12.37 32.16 0.40 -2.61 16 20 N -0.04 -0.41 13.47 60.35 0.81 0.40 16 21 N -0.22 -1.39 7.90 60.35 0.48 -0.92 16 22 H 0.48 0.53 8.96 -340.37 -3.05 -2.52 16 23 N -0.28 -2.41 12.18 32.17 0.39 -2.02 16 24 C 0.01 0.08 11.02 -17.01 -0.19 -0.11 16 25 N -0.19 -2.66 11.48 30.76 0.35 -2.30 16 26 N -0.30 -4.43 11.52 31.21 0.36 -4.07 16 27 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 32 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.91 7.95 -51.93 -0.41 0.49 16 37 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 38 H 0.41 5.37 6.29 -40.82 -0.26 5.11 16 39 H 0.16 1.87 6.80 -52.49 -0.36 1.51 16 40 H 0.17 1.47 7.97 -52.49 -0.42 1.05 16 LS Contribution 333.40 15.07 5.02 5.02 Total: -1.00 -31.62 333.40 -7.36 -38.98 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.40 Total: -0.23 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.57 Total: -12.91 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 3.26 Total: -47.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.62 -7.36 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.353 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds