Wall clock time and date at job start Tue Mar 31 2020 10:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46618 * 2 1 4 4 C 1.52996 * 109.47179 * 240.00122 * 2 1 3 5 5 C 1.50701 * 109.47371 * 59.99927 * 4 2 1 6 6 H 1.07994 * 119.99839 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99948 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99975 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00092 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47083 * 89.99987 * 9 7 5 11 11 H 1.48496 * 109.47002 * 209.99653 * 9 7 5 12 12 H 1.48498 * 109.47272 * 329.99840 * 9 7 5 13 13 C 1.53003 * 109.46840 * 119.99832 * 2 1 3 14 14 N 1.46497 * 109.47210 * 300.00017 * 13 2 1 15 15 C 1.39082 * 119.99999 * 179.97438 * 14 13 2 16 16 C 1.39290 * 120.10113 * 0.28911 * 15 14 13 17 17 C 1.39646 * 117.77158 * 180.21367 * 16 15 14 18 18 C 1.48471 * 121.09651 * 179.78609 * 17 16 15 19 19 N 1.34051 * 126.67166 * 359.40018 * 18 17 16 20 20 N 1.28991 * 107.26519 * 180.26320 * 19 18 17 21 21 N 1.28727 * 108.94656 * 0.02562 * 20 19 18 22 22 H 0.96997 * 125.34472 * 179.97438 * 21 20 19 23 23 N 1.28874 * 109.31728 * 359.97438 * 21 20 19 24 24 C 1.39881 * 117.81020 * 359.51242 * 17 16 15 25 25 N 1.31663 * 119.83913 * 0.25007 * 24 17 16 26 26 N 1.28290 * 122.41627 * 0.02562 * 25 24 17 27 27 H 1.09002 * 109.47607 * 299.99924 * 1 2 3 28 28 H 1.08999 * 109.47370 * 60.00090 * 1 2 3 29 29 H 1.09011 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47095 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47633 * 299.99752 * 3 2 1 32 32 H 1.09006 * 109.47296 * 60.00452 * 3 2 1 33 33 H 1.09000 * 109.46830 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47160 * 299.99387 * 4 2 1 35 35 H 0.97005 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46516 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47021 * 60.00194 * 13 2 1 38 38 H 0.97003 * 120.00488 * 0.02562 * 14 13 2 39 39 H 1.07999 * 121.11490 * 359.97438 * 16 15 14 40 40 H 1.07992 * 120.07874 * 180.27851 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8057 9 14 2.9452 -2.0004 -3.9033 10 1 2.0867 -3.2111 -3.9493 11 1 3.7376 -1.9076 -5.1557 12 1 3.8652 -2.0898 -2.7410 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8871 -0.5061 3.7087 16 6 2.6922 -1.6352 3.8390 17 6 2.9951 -2.0730 5.1300 18 6 3.8429 -3.2710 5.3544 19 7 4.3889 -4.0532 4.4125 20 7 5.0436 -4.9838 5.0201 21 7 4.9280 -4.8148 6.2909 22 1 5.3263 -5.3805 6.9708 23 7 4.2001 -3.7759 6.5184 24 6 2.4782 -1.3422 6.2049 25 7 1.7295 -0.2833 5.9775 26 7 1.4460 0.1168 4.7920 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8901 33 1 3.1300 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.6677 -0.1928 -5.6868 36 1 3.1299 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9936 0.7579 2.3565 39 1 3.0665 -2.1570 2.9706 40 1 2.6932 -1.6455 7.2188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603139704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:08 Heat of formation + Delta-G solvation = 155.159729 kcal Electronic energy + Delta-G solvation = -23823.780226 eV Core-core repulsion = 20290.171514 eV Total energy + Delta-G solvation = -3533.608712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.59774 -41.99410 -39.42181 -36.35816 -36.00719 -35.12915 -34.34966 -32.83832 -31.70791 -29.54162 -27.97610 -27.66850 -26.67871 -25.95327 -24.90981 -23.86373 -22.99788 -20.57607 -19.76044 -18.88739 -18.66150 -18.36333 -18.26532 -17.45494 -16.39988 -16.37706 -15.93651 -15.62687 -15.49608 -15.19724 -15.03861 -14.43787 -14.22887 -14.14035 -14.03645 -13.45353 -13.04716 -12.81595 -12.79894 -12.69125 -12.42552 -12.40747 -12.27094 -12.15500 -12.12473 -11.89266 -11.71332 -11.38577 -11.19777 -10.89150 -10.72407 -10.67402 -10.66758 -9.04799 -8.19083 -6.19822 -0.76205 0.04083 0.14066 1.13415 1.28964 1.40245 1.42648 1.52302 1.95277 2.36800 2.42507 2.64263 2.93542 3.16920 3.41407 3.55105 3.79607 3.85226 3.90270 4.06086 4.07035 4.21106 4.31925 4.54512 4.64641 4.69816 4.72536 4.91264 4.96764 4.99655 5.08477 5.11678 5.34580 5.40333 5.44714 5.53675 5.57594 5.70093 5.77872 5.93067 6.41737 6.52954 6.88277 6.98795 7.43019 7.79916 8.96935 Molecular weight = 303.15amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.003442 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.065060 B = 8132.781949 C = 9703.489404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.055 4.055 3 C -0.126 4.126 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.046 0.954 7 C 0.002 3.998 8 N -0.956 5.956 9 Si 0.937 3.063 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.243 1.243 13 C 0.136 3.864 14 N -0.696 5.696 15 C 0.348 3.652 16 C -0.139 4.139 17 C 0.029 3.971 18 C 0.204 3.796 19 N -0.284 5.284 20 N -0.051 5.051 21 N -0.192 5.192 22 H 0.498 0.502 23 N -0.271 5.271 24 C 0.020 3.980 25 N -0.217 5.217 26 N -0.328 5.328 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.413 0.587 39 H 0.165 0.835 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -10.073 25.869 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.056 4.056 3 C -0.183 4.183 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.065 0.935 7 C -0.194 4.194 8 N -0.598 5.598 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.166 1.166 13 C 0.012 3.988 14 N -0.329 5.329 15 C 0.105 3.895 16 C -0.175 4.175 17 C 0.014 3.986 18 C -0.077 4.077 19 N -0.156 5.156 20 N -0.046 5.046 21 N -0.043 5.043 22 H 0.358 0.642 23 N -0.124 5.124 24 C -0.153 4.153 25 N -0.056 5.056 26 N -0.180 5.180 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.183 0.817 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.713 -9.448 25.942 28.414 hybrid contribution 0.880 -1.286 -1.075 1.893 sum 7.593 -10.734 24.867 28.130 Atomic orbital electron populations 1.21718 0.94447 1.01371 1.00786 1.20507 0.96092 0.95938 0.93045 1.21714 1.00475 0.95325 1.00786 1.19564 0.96318 0.95612 0.92492 1.21405 1.30141 1.12232 0.90377 0.93538 1.25895 0.97552 1.00127 0.95802 1.70062 1.48341 1.42866 0.98496 0.85854 0.79817 0.80041 0.78115 1.19692 1.21969 1.16595 1.21643 0.99123 0.96013 0.82024 1.44636 1.55233 1.32640 1.00436 1.19997 0.90703 0.90224 0.88558 1.22001 0.99739 0.97083 0.98686 1.18120 0.95212 0.91017 0.94208 1.23178 1.01135 0.98267 0.85074 1.76163 1.10173 1.02193 1.27062 1.78950 1.16365 1.17922 0.91385 1.47857 1.30778 1.17988 1.07713 0.64196 1.74885 1.11146 1.01589 1.24774 1.24351 0.96852 0.93108 1.00972 1.72722 1.09231 1.11213 1.12432 1.72812 1.23627 1.27649 0.93932 0.92080 0.94006 0.93139 0.93162 0.93991 0.92082 0.95954 0.96129 0.92973 0.90776 0.90724 0.74840 0.81715 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.05 71.98 0.58 -3.56 16 2 C -0.06 -1.82 0.54 -52.18 -0.03 -1.85 16 3 C -0.13 -4.13 8.05 71.98 0.58 -3.56 16 4 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 5 C -0.50 -26.71 8.20 25.60 0.21 -26.50 16 6 H 0.05 2.71 5.92 -2.91 -0.02 2.69 16 7 C 0.00 0.11 5.47 84.65 0.46 0.58 16 8 N -0.96 -58.77 13.96 21.44 0.30 -58.47 16 9 Si 0.94 42.91 27.47 68.60 1.88 44.79 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 13 C 0.14 3.54 3.81 86.38 0.33 3.87 16 14 N -0.70 -17.00 5.13 -344.78 -1.77 -18.77 16 15 C 0.35 8.75 7.74 133.04 1.03 9.78 16 16 C -0.14 -3.12 9.10 22.86 0.21 -2.91 16 17 C 0.03 0.59 5.92 -19.81 -0.12 0.47 16 18 C 0.20 3.89 7.98 137.38 1.10 4.99 16 19 N -0.28 -6.02 12.37 -52.17 -0.65 -6.66 16 20 N -0.05 -0.84 13.47 37.02 0.50 -0.34 16 21 N -0.19 -1.78 7.90 37.02 0.29 -1.48 16 22 H 0.50 -0.61 8.96 -347.54 -3.12 -3.73 16 23 N -0.27 -3.80 12.18 -52.12 -0.63 -4.43 16 24 C 0.02 0.39 11.02 85.12 0.94 1.33 16 25 N -0.22 -5.57 11.48 -56.58 -0.65 -6.22 16 26 N -0.33 -9.09 11.52 -55.18 -0.64 -9.73 16 27 H 0.06 1.66 6.86 -2.39 -0.02 1.65 16 28 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 32 H 0.06 1.66 6.86 -2.38 -0.02 1.65 16 33 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 34 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 35 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 36 H 0.07 1.83 7.95 -2.39 -0.02 1.81 16 37 H 0.07 1.84 7.97 -2.39 -0.02 1.82 16 38 H 0.41 9.94 6.29 -92.71 -0.58 9.36 16 39 H 0.17 3.48 6.80 -2.91 -0.02 3.46 16 40 H 0.20 2.75 7.97 -2.91 -0.02 2.73 16 Total: -1.00 -69.71 333.40 1.38 -68.34 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -2.64 Total: 10.33 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.38 Total: -17.35 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.24 Total: -106.11 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -69.71 1.38 -68.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.496 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds