Wall clock time and date at job start Tue Mar 31 2020 10:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 C 1.52989 * 109.47141 * 239.99573 * 2 1 3 5 5 C 1.50699 * 109.47299 * 185.00277 * 4 2 1 6 6 C 1.37983 * 120.07203 * 266.62552 * 5 4 2 7 7 C 1.38338 * 120.14585 * 179.97438 * 6 5 4 8 8 C 1.38379 * 120.29122 * 0.02562 * 7 6 5 9 9 C 1.37935 * 120.14527 * 359.97438 * 8 7 6 10 10 C 1.39555 * 120.07939 * 86.34396 * 5 4 2 11 11 C 1.47848 * 120.13742 * 0.02562 * 10 5 4 12 12 O 1.21551 * 120.00139 * 335.09354 * 11 10 5 13 13 N 1.34778 * 119.99975 * 155.10184 * 11 10 5 14 14 C 1.47064 * 136.05584 * 4.41583 * 13 11 10 15 15 C 1.53241 * 88.08350 * 207.20770 * 14 13 11 16 16 O 1.42894 * 114.19543 * 87.72924 * 15 14 13 17 17 C 1.50693 * 114.32764 * 220.47240 * 15 14 13 18 18 H 1.08000 * 120.00023 * 93.75965 * 17 15 14 19 19 C 1.37880 * 120.00041 * 273.75673 * 17 15 14 20 20 N 1.31510 * 120.00090 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00077 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46990 * 90.00203 * 21 19 17 23 23 H 1.48502 * 109.46861 * 210.00262 * 21 19 17 24 24 H 1.48497 * 109.47070 * 330.00183 * 21 19 17 25 25 C 1.47071 * 136.05626 * 184.79338 * 13 11 10 26 26 H 1.08999 * 109.46717 * 60.00000 * 1 2 3 27 27 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47194 * 300.00358 * 1 2 3 29 29 H 1.09000 * 109.46688 * 119.99447 * 2 1 3 30 30 H 1.08996 * 109.47076 * 59.99695 * 3 2 1 31 31 H 1.08991 * 109.47100 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46588 * 299.99801 * 3 2 1 33 33 H 1.08996 * 109.47581 * 305.00294 * 4 2 1 34 34 H 1.09004 * 109.47389 * 65.00202 * 4 2 1 35 35 H 1.07999 * 119.93188 * 359.95406 * 6 5 4 36 36 H 1.08000 * 119.85578 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.93084 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.07132 * 180.02562 * 9 8 7 39 39 H 1.09001 * 113.47293 * 321.93995 * 14 13 11 40 40 H 1.09001 * 113.46528 * 92.38173 * 14 13 11 41 41 H 0.96697 * 114.00322 * 86.30176 * 16 15 14 42 42 H 0.96995 * 120.00633 * 179.97438 * 20 19 17 43 43 H 1.08994 * 113.46619 * 267.61801 * 25 13 11 44 44 H 1.09000 * 113.46658 * 37.99905 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.8295 -1.1887 6 6 4.3290 0.1332 -1.7867 7 6 5.7079 0.0356 -1.7318 8 6 6.3070 -1.0268 -1.0782 9 6 5.5316 -1.9959 -0.4762 10 6 4.1398 -1.9004 -0.5229 11 6 3.3025 -2.9325 0.1249 12 8 2.1731 -2.6618 0.4834 13 7 3.7917 -4.1734 0.3181 14 6 5.0821 -4.8473 0.1095 15 6 4.3114 -6.1622 -0.0489 16 8 3.8755 -6.4285 -1.3835 17 6 4.9649 -7.3483 0.6120 18 1 4.6844 -7.6293 1.6164 19 6 5.9210 -8.0750 -0.0655 20 7 6.2630 -7.7326 -1.2883 21 14 6.7317 -9.5449 0.7541 22 1 5.9477 -10.7710 0.4589 23 1 8.1131 -9.7029 0.2324 24 1 6.7789 -9.3291 2.2226 25 6 3.2679 -5.4512 0.8239 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.8678 0.9645 -2.2991 36 1 6.3195 0.7915 -2.2018 37 1 7.3839 -1.0974 -1.0392 38 1 6.0005 -2.8244 0.0339 39 1 5.5937 -4.5334 -0.8004 40 1 5.7293 -4.8264 0.9863 41 1 4.5350 -6.8764 -1.9307 42 1 6.9358 -8.2435 -1.7649 43 1 3.4271 -5.5928 1.8929 44 1 2.2397 -5.6492 0.5212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771683163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:13 Heat of formation + Delta-G solvation = -48.280864 kcal Electronic energy + Delta-G solvation = -25391.658657 eV Core-core repulsion = 21888.182940 eV Total energy + Delta-G solvation = -3503.475716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72080 -40.31093 -38.64917 -37.07419 -35.88128 -34.14518 -32.53139 -32.36669 -30.22137 -27.99251 -27.71326 -26.99950 -26.88675 -24.43151 -22.65059 -21.93611 -20.88867 -20.06017 -19.34915 -18.13956 -17.55025 -17.02975 -16.82645 -16.56464 -16.06747 -15.96292 -15.45574 -15.31031 -15.10541 -14.86448 -14.56217 -14.27964 -13.99547 -13.80563 -13.44798 -13.42658 -13.35898 -13.01295 -12.92583 -12.80447 -12.69889 -12.49522 -12.26743 -12.22794 -12.15932 -11.77712 -11.59728 -11.40679 -11.32682 -10.83467 -10.62161 -10.21123 -9.94014 -9.70946 -9.48167 -8.28745 -6.46424 -0.04527 0.40900 1.46594 1.49817 1.59109 1.84392 1.95647 2.39946 2.84590 2.92806 3.45745 3.72027 3.78129 3.88673 4.04233 4.10977 4.16291 4.20024 4.33339 4.41563 4.45210 4.51522 4.59095 4.67858 4.73740 4.78245 4.81757 4.85734 4.87454 4.94748 5.01918 5.04195 5.06535 5.16467 5.21196 5.34554 5.40766 5.47438 5.49848 5.52945 5.70114 5.71411 5.88810 5.99714 6.59588 6.83779 7.14757 7.27964 7.46432 8.77609 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.003983 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.667436 B = 7028.561631 C = 7851.718189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.072 4.072 5 C -0.037 4.037 6 C -0.125 4.125 7 C -0.086 4.086 8 C -0.135 4.135 9 C -0.101 4.101 10 C -0.151 4.151 11 C 0.565 3.435 12 O -0.570 6.570 13 N -0.635 5.635 14 C 0.087 3.913 15 C 0.220 3.780 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.075 0.925 19 C 0.034 3.966 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.279 1.279 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.109 3.891 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.389 0.611 42 H 0.277 0.723 43 H 0.102 0.898 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 16.065 -0.892 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.109 4.109 5 C -0.038 4.038 6 C -0.143 4.143 7 C -0.104 4.104 8 C -0.153 4.153 9 C -0.119 4.119 10 C -0.154 4.154 11 C 0.358 3.642 12 O -0.452 6.452 13 N -0.367 5.367 14 C -0.036 4.036 15 C 0.179 3.821 16 O -0.400 6.400 17 C -0.592 4.592 18 H 0.093 0.907 19 C -0.167 4.167 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.013 4.013 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.169 0.831 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.471 16.650 -0.676 16.670 hybrid contribution 0.812 -1.642 0.253 1.849 sum 0.342 15.008 -0.423 15.018 Atomic orbital electron populations 1.21722 0.94733 1.00737 1.02177 1.20912 0.95968 0.96149 0.96925 1.21878 1.00993 0.94606 1.02389 1.20685 0.90150 1.00911 0.99177 1.20130 0.96789 0.92408 0.94435 1.21319 0.93939 0.98751 1.00270 1.21746 0.94787 0.97638 0.96244 1.21418 1.01138 0.94334 0.98373 1.21696 0.92323 0.99338 0.98586 1.19803 0.94203 0.96871 1.04488 1.18411 0.86461 0.80450 0.78869 1.90665 1.20692 1.79981 1.53887 1.49655 1.16579 1.08319 1.62183 1.23983 0.86814 0.92290 1.00488 1.19769 0.89878 0.91077 0.81389 1.86030 1.47226 1.81956 1.24787 1.21659 1.22118 1.13480 1.01967 0.90698 1.25771 0.95919 0.99669 0.95310 1.69324 1.32909 1.41336 1.12222 0.85344 0.77426 0.78617 0.78987 1.20431 1.20468 1.18933 1.23316 0.98947 0.79771 0.99299 0.91346 0.94812 0.92171 0.93460 0.92497 0.92856 0.91045 0.93347 0.89542 0.82609 0.81831 0.83111 0.85982 0.91993 0.88856 0.75490 0.91281 0.88028 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.19 71.98 0.66 -2.78 16 2 C -0.08 -2.26 2.39 -10.79 -0.03 -2.29 16 3 C -0.14 -2.95 8.82 71.98 0.63 -2.31 16 4 C -0.07 -2.16 4.07 29.84 0.12 -2.03 16 5 C -0.04 -1.11 4.64 -19.61 -0.09 -1.20 16 6 C -0.13 -2.79 8.21 22.23 0.18 -2.61 16 7 C -0.09 -1.71 10.04 22.33 0.22 -1.48 16 8 C -0.13 -3.22 10.03 22.23 0.22 -3.00 16 9 C -0.10 -3.21 8.76 22.52 0.20 -3.02 16 10 C -0.15 -5.46 5.85 -20.09 -0.12 -5.58 16 11 C 0.57 24.51 7.53 86.79 0.65 25.16 16 12 O -0.57 -26.39 12.98 -3.88 -0.05 -26.44 16 13 N -0.63 -28.12 3.68 -862.63 -3.18 -31.29 16 14 C 0.09 3.80 5.61 83.10 0.47 4.27 16 15 C 0.22 10.78 1.57 -11.29 -0.02 10.76 16 16 O -0.59 -31.47 13.54 -148.98 -2.02 -33.49 16 17 C -0.55 -27.68 8.69 25.60 0.22 -27.46 16 18 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 19 C 0.03 1.65 5.39 84.66 0.46 2.11 16 20 N -0.92 -46.16 11.01 21.45 0.24 -45.93 16 21 Si 0.97 38.97 29.54 68.60 2.03 40.99 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 C 0.11 4.94 8.04 83.19 0.67 5.61 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.05 1.67 6.56 -2.39 -0.02 1.66 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.13 6.44 -2.39 -0.02 1.11 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.82 6.26 -2.39 -0.01 1.80 16 34 H 0.09 2.06 8.06 -2.38 -0.02 2.04 16 35 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.12 4.04 5.35 -2.91 -0.02 4.02 16 39 H 0.06 2.75 7.08 -2.39 -0.02 2.73 16 40 H 0.09 3.79 8.09 -2.39 -0.02 3.77 16 41 H 0.39 21.03 6.33 -74.06 -0.47 20.56 16 42 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 43 H 0.10 4.16 8.10 -2.39 -0.02 4.14 16 44 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -61.08 352.31 2.02 -59.06 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: 0.54 Total: 42.96 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 4.46 Total: -5.86 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.94 Total: -77.22 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -2.07 Total: -59.92 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Total: -61.08 2.02 -59.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771683163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.779 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds