Wall clock time and date at job start Tue Mar 31 2020 09:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47616 * 2 1 4 4 C 1.50707 * 109.47277 * 120.00360 * 2 1 3 5 5 O 1.21273 * 120.00204 * 119.99380 * 4 2 1 6 6 N 1.34774 * 119.99327 * 299.99940 * 4 2 1 7 7 C 1.46508 * 119.99681 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47169 * 180.02562 * 7 6 4 9 9 C 1.38328 * 119.96224 * 270.02412 * 8 7 6 10 10 C 1.38279 * 120.13490 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06774 * 359.77134 * 10 9 8 12 12 C 1.38852 * 119.93464 * 0.50144 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.74702 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99807 * 8 7 6 23 23 C 1.53002 * 109.47190 * 239.99972 * 2 1 3 24 24 C 1.52999 * 117.50036 * 128.74819 * 23 2 1 25 25 C 1.53003 * 117.49851 * 60.09022 * 23 2 1 26 26 H 1.08995 * 109.47243 * 299.99960 * 1 2 3 27 27 H 1.09008 * 109.46638 * 59.99930 * 1 2 3 28 28 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47661 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47340 * 300.00448 * 3 2 1 31 31 H 1.09004 * 109.46985 * 59.99944 * 3 2 1 32 32 H 0.96993 * 120.00552 * 0.02562 * 6 4 2 33 33 H 1.09004 * 109.46757 * 59.99773 * 7 6 4 34 34 H 1.08998 * 109.46890 * 300.00426 * 7 6 4 35 35 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.96467 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.03757 * 180.27571 * 11 10 9 38 38 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 40 40 H 1.09007 * 115.55000 * 274.42003 * 23 2 1 41 41 H 1.09002 * 117.49843 * 0.02562 * 24 23 2 42 42 H 1.08997 * 117.50001 * 145.02056 * 24 23 2 43 43 H 1.08998 * 117.49610 * 214.98001 * 25 23 2 44 44 H 1.09001 * 117.49798 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9410 3.6507 8 6 1.6919 -0.2309 4.8812 9 6 2.4397 0.7868 5.4455 10 6 1.9815 1.4411 6.5743 11 6 0.7729 1.0832 7.1389 12 6 0.0226 0.0582 6.5781 13 8 -1.1633 -0.2993 7.1338 14 6 -1.4987 0.2959 8.2963 15 1 -0.8752 1.0791 8.7015 16 6 -2.6440 -0.0978 8.9714 17 7 -3.4031 -1.0522 8.4780 18 14 -3.1083 0.7263 10.5822 19 1 -3.9744 1.9005 10.3059 20 1 -3.8423 -0.2395 11.4388 21 1 -1.8774 1.1730 11.2826 22 6 0.4851 -0.5965 5.4437 23 6 2.0400 -0.7213 -1.2492 24 6 3.0763 0.0039 -2.1101 25 6 1.6375 -0.1483 -2.6096 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.1488 0.5384 2.5435 33 1 3.2847 -0.9414 3.6508 34 1 1.8309 -1.9685 3.6505 35 1 3.3833 1.0710 5.0037 36 1 2.5674 2.2356 7.0124 37 1 0.4134 1.5976 8.0179 38 1 -4.2042 -1.3277 8.9505 39 1 -0.0981 -1.3914 5.0029 40 1 2.1253 -1.8047 -1.1647 41 1 3.3951 0.9947 -1.7862 42 1 3.8432 -0.6024 -2.5922 43 1 1.4583 -0.8547 -3.4201 44 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771702441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:55 Heat of formation + Delta-G solvation = -25.278938 kcal Electronic energy + Delta-G solvation = -24071.696226 eV Core-core repulsion = 20569.217948 eV Total energy + Delta-G solvation = -3502.478278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46397 -39.16335 -37.82639 -36.74510 -34.59425 -33.24367 -32.34547 -30.59531 -29.13344 -27.70793 -26.11399 -25.21639 -24.43139 -22.42742 -21.76967 -21.37942 -20.79851 -18.96398 -17.82594 -17.32708 -16.81968 -16.30348 -15.46082 -15.19577 -15.08217 -14.77651 -14.47929 -14.40532 -13.98079 -13.64826 -13.53013 -13.12212 -12.93147 -12.65840 -12.45645 -12.41760 -12.36604 -12.08824 -11.75881 -11.66794 -11.40279 -11.31845 -10.99809 -10.94128 -10.83860 -10.72184 -10.53140 -10.49124 -10.18606 -9.65192 -9.42979 -8.96038 -8.90911 -8.25866 -7.35139 -6.51070 -4.10678 1.88494 2.24694 2.70121 3.07958 3.09800 3.14592 3.30505 3.68661 3.90864 4.33407 4.43842 4.58700 4.68218 4.82759 4.87695 4.91907 5.01321 5.05186 5.23276 5.26949 5.34781 5.43281 5.51643 5.53131 5.60264 5.65215 5.71471 5.73176 5.82698 5.89472 5.92125 5.96051 6.02071 6.05906 6.13802 6.23213 6.50548 6.53649 6.79562 6.97410 7.16804 7.25094 7.33474 7.59252 7.69708 7.93019 8.28666 8.94292 9.62763 10.66681 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.002702 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.597131 B =10360.467496 C =10829.894798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.523 3.477 5 O -0.543 6.543 6 N -0.719 5.719 7 C 0.167 3.833 8 C -0.072 4.072 9 C -0.195 4.195 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.151 3.849 13 O -0.176 6.176 14 C -0.394 4.394 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.171 4.171 23 C -0.128 4.128 24 C -0.182 4.182 25 C -0.179 4.179 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.889 5.626 -15.726 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.202 4.202 4 C 0.309 3.691 5 O -0.420 6.420 6 N -0.370 5.370 7 C 0.045 3.955 8 C -0.073 4.073 9 C -0.215 4.215 10 C -0.094 4.094 11 C -0.246 4.246 12 C 0.097 3.903 13 O -0.079 6.079 14 C -0.470 4.470 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.191 4.191 23 C -0.147 4.147 24 C -0.219 4.219 25 C -0.215 4.215 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.992 4.610 -15.786 18.743 hybrid contribution -0.489 0.818 1.027 1.401 sum 8.503 5.428 -14.759 17.877 Atomic orbital electron populations 1.21851 0.92036 1.03055 1.02797 1.20250 0.97127 0.95851 0.92186 1.22002 1.01780 0.93630 1.02814 1.20409 0.79976 0.84333 0.84370 1.90668 1.38105 1.26442 1.86768 1.46130 1.53480 1.32168 1.05200 1.20153 0.98701 0.95540 0.81154 1.19272 0.94807 0.97233 0.96001 1.20476 1.01003 1.00439 0.99578 1.20744 0.95226 0.98267 0.95172 1.21241 0.97272 1.01889 1.04165 1.19322 0.86370 0.92234 0.92394 1.83982 1.28804 1.59392 1.35760 1.21323 1.09533 1.18967 0.97143 0.89038 1.25296 0.95368 0.96431 0.99356 1.70032 1.14011 1.26776 1.38725 0.85711 0.79068 0.78675 0.79979 1.19841 1.20199 1.19174 1.20085 0.97241 1.03645 0.98124 1.22051 1.03346 0.99846 0.89439 1.23134 0.92476 1.02393 1.03909 1.22983 0.98205 1.03213 0.97145 0.91744 0.91346 0.91793 0.91648 0.91339 0.91774 0.76289 0.91012 0.90912 0.87535 0.87295 0.85468 0.91930 0.86414 0.86726 0.88253 0.89007 0.88852 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.21 37.16 0.31 -0.98 16 2 C -0.05 -0.52 0.72 -155.66 -0.11 -0.63 16 3 C -0.14 -1.21 6.97 37.15 0.26 -0.95 16 4 C 0.52 7.08 6.48 -10.98 -0.07 7.01 16 5 O -0.54 -9.27 15.65 5.56 0.09 -9.18 16 6 N -0.72 -9.36 5.33 -61.47 -0.33 -9.69 16 7 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 8 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 9 C -0.20 -3.16 9.70 -39.53 -0.38 -3.54 16 10 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 11 C -0.23 -4.67 9.17 -39.40 -0.36 -5.04 16 12 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 13 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 14 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 15 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.80 13.67 55.48 0.76 -24.05 16 18 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 23 C -0.13 -1.31 4.75 -90.62 -0.43 -1.74 16 24 C -0.18 -1.58 9.57 -26.70 -0.26 -1.84 16 25 C -0.18 -1.41 9.39 -26.69 -0.25 -1.66 16 26 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 27 H 0.07 0.52 7.29 -51.92 -0.38 0.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.57 6.97 -51.93 -0.36 0.21 16 30 H 0.07 0.47 7.07 -51.93 -0.37 0.10 16 31 H 0.06 0.51 7.57 -51.93 -0.39 0.11 16 32 H 0.40 4.70 7.30 -40.82 -0.30 4.40 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.64 5.64 -52.48 -0.30 2.34 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 1.39 7.47 -51.93 -0.39 1.01 16 41 H 0.10 0.79 5.85 -51.93 -0.30 0.48 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.66 7.07 -51.93 -0.37 0.29 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -30.99 360.68 -8.12 -39.11 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.33 Total: 8.63 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.72 Total: -20.42 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.43 Total: -33.73 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.99 -8.12 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771702441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.829 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds