Wall clock time and date at job start Tue Mar 31 2020 09:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47616 * 2 1 4 4 C 1.50707 * 109.47277 * 120.00360 * 2 1 3 5 5 O 1.21273 * 120.00204 * 119.99380 * 4 2 1 6 6 N 1.34774 * 119.99327 * 299.99940 * 4 2 1 7 7 C 1.46508 * 119.99681 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47169 * 180.02562 * 7 6 4 9 9 C 1.38328 * 119.96224 * 270.02412 * 8 7 6 10 10 C 1.38279 * 120.13490 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06774 * 359.77134 * 10 9 8 12 12 C 1.38852 * 119.93464 * 0.50144 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.74702 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99807 * 8 7 6 23 23 C 1.53002 * 109.47190 * 239.99972 * 2 1 3 24 24 C 1.52999 * 117.50036 * 128.74819 * 23 2 1 25 25 C 1.53003 * 117.49851 * 60.09022 * 23 2 1 26 26 H 1.08995 * 109.47243 * 299.99960 * 1 2 3 27 27 H 1.09008 * 109.46638 * 59.99930 * 1 2 3 28 28 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47661 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47340 * 300.00448 * 3 2 1 31 31 H 1.09004 * 109.46985 * 59.99944 * 3 2 1 32 32 H 0.96993 * 120.00552 * 0.02562 * 6 4 2 33 33 H 1.09004 * 109.46757 * 59.99773 * 7 6 4 34 34 H 1.08998 * 109.46890 * 300.00426 * 7 6 4 35 35 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.96467 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.03757 * 180.27571 * 11 10 9 38 38 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 40 40 H 1.09007 * 115.55000 * 274.42003 * 23 2 1 41 41 H 1.09002 * 117.49843 * 0.02562 * 24 23 2 42 42 H 1.08997 * 117.50001 * 145.02056 * 24 23 2 43 43 H 1.08998 * 117.49610 * 214.98001 * 25 23 2 44 44 H 1.09001 * 117.49798 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9410 3.6507 8 6 1.6919 -0.2309 4.8812 9 6 2.4397 0.7868 5.4455 10 6 1.9815 1.4411 6.5743 11 6 0.7729 1.0832 7.1389 12 6 0.0226 0.0582 6.5781 13 8 -1.1633 -0.2993 7.1338 14 6 -1.4987 0.2959 8.2963 15 1 -0.8752 1.0791 8.7015 16 6 -2.6440 -0.0978 8.9714 17 7 -3.4031 -1.0522 8.4780 18 14 -3.1083 0.7263 10.5822 19 1 -3.9744 1.9005 10.3059 20 1 -3.8423 -0.2395 11.4388 21 1 -1.8774 1.1730 11.2826 22 6 0.4851 -0.5965 5.4437 23 6 2.0400 -0.7213 -1.2492 24 6 3.0763 0.0039 -2.1101 25 6 1.6375 -0.1483 -2.6096 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.1488 0.5384 2.5435 33 1 3.2847 -0.9414 3.6508 34 1 1.8309 -1.9685 3.6505 35 1 3.3833 1.0710 5.0037 36 1 2.5674 2.2356 7.0124 37 1 0.4134 1.5976 8.0179 38 1 -4.2042 -1.3277 8.9505 39 1 -0.0981 -1.3914 5.0029 40 1 2.1253 -1.8047 -1.1647 41 1 3.3951 0.9947 -1.7862 42 1 3.8432 -0.6024 -2.5922 43 1 1.4583 -0.8547 -3.4201 44 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771702441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:54 Heat of formation + Delta-G solvation = -43.786156 kcal Electronic energy + Delta-G solvation = -24072.498759 eV Core-core repulsion = 20569.217948 eV Total energy + Delta-G solvation = -3503.280811 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48878 -40.77222 -38.88190 -38.25441 -35.84809 -34.33236 -34.05887 -31.97712 -30.73773 -28.38890 -27.64538 -26.90475 -25.30135 -23.28841 -23.06894 -22.66076 -22.13495 -20.09500 -19.38579 -18.81096 -18.00862 -17.35050 -16.83831 -16.60452 -16.25657 -16.05280 -15.96925 -15.50759 -15.47451 -15.10742 -14.72958 -14.37998 -14.01080 -13.93331 -13.68177 -13.59209 -13.29217 -13.15789 -13.04261 -13.00517 -12.54013 -12.46449 -12.38583 -12.28262 -12.12074 -11.97124 -11.72960 -11.25162 -11.22059 -10.94524 -10.82368 -10.68031 -10.12879 -9.75551 -9.04145 -8.47406 -6.16020 0.37609 0.69714 1.35744 1.44509 1.53055 1.62936 2.17047 2.21695 2.83619 2.96919 3.15353 3.39161 3.58866 3.66693 3.82415 3.97450 4.08271 4.09364 4.16134 4.29220 4.33218 4.39282 4.49339 4.52003 4.64556 4.71200 4.71926 4.79989 4.87223 4.92261 4.97138 5.00689 5.05183 5.11358 5.23680 5.24714 5.28217 5.31968 5.35117 5.41529 5.61550 5.69770 5.70976 6.01170 6.15615 6.53227 6.97456 7.21144 7.77596 8.75732 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.002702 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.597131 B =10360.467496 C =10829.894798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.142 4.142 4 C 0.520 3.480 5 O -0.582 6.582 6 N -0.712 5.712 7 C 0.173 3.827 8 C -0.058 4.058 9 C -0.168 4.168 10 C -0.068 4.068 11 C -0.234 4.234 12 C 0.113 3.887 13 O -0.232 6.232 14 C -0.412 4.412 15 H 0.104 0.896 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.252 1.252 22 C -0.182 4.182 23 C -0.152 4.152 24 C -0.181 4.181 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 8.526 -16.675 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.200 4.200 4 C 0.308 3.692 5 O -0.462 6.462 6 N -0.364 5.364 7 C 0.049 3.951 8 C -0.059 4.059 9 C -0.187 4.187 10 C -0.086 4.086 11 C -0.254 4.254 12 C 0.063 3.937 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.176 1.176 22 C -0.202 4.202 23 C -0.171 4.171 24 C -0.218 4.218 25 C -0.197 4.197 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.143 7.547 -16.766 21.499 hybrid contribution -0.844 -0.090 1.085 1.378 sum 10.299 7.457 -15.681 20.188 Atomic orbital electron populations 1.21878 0.91332 1.02458 1.04003 1.20240 0.97518 0.96679 0.90198 1.22023 1.01658 0.92046 1.04235 1.21094 0.79090 0.83823 0.85201 1.90651 1.40000 1.28249 1.87314 1.46037 1.53400 1.32224 1.04690 1.20028 0.99268 0.94822 0.80944 1.19430 0.93229 0.97016 0.96196 1.20987 1.01534 0.98130 0.98082 1.21162 0.93807 0.98727 0.94914 1.21379 0.98483 1.01287 1.04223 1.19840 0.86304 0.93922 0.93620 1.83949 1.31508 1.61547 1.36872 1.21827 1.10104 1.19376 0.97544 0.87870 1.26584 0.95065 0.97096 1.03308 1.70183 1.15159 1.29541 1.41064 0.84595 0.79197 0.77653 0.74840 1.18707 1.19859 1.17560 1.20203 0.98578 1.03602 0.97785 1.21958 1.05843 0.98541 0.90779 1.23229 0.92831 1.02590 1.03154 1.23075 0.97753 1.03438 0.95387 0.91565 0.89106 0.93340 0.91864 0.89225 0.91102 0.75286 0.89668 0.92242 0.83450 0.83268 0.86104 0.91875 0.87628 0.89613 0.87059 0.89173 0.88283 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.21 71.98 0.59 -1.75 16 2 C -0.04 -0.81 0.72 -52.93 -0.04 -0.85 16 3 C -0.14 -1.92 6.97 71.98 0.50 -1.42 16 4 C 0.52 13.63 6.48 87.66 0.57 14.20 16 5 O -0.58 -19.96 15.65 -3.01 -0.05 -20.01 16 6 N -0.71 -17.48 5.33 -466.77 -2.49 -19.97 16 7 C 0.17 4.82 5.80 85.63 0.50 5.32 16 8 C -0.06 -1.84 5.25 -19.88 -0.10 -1.94 16 9 C -0.17 -4.72 9.70 22.30 0.22 -4.51 16 10 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 11 C -0.23 -9.53 9.17 22.39 0.21 -9.33 16 12 C 0.11 5.41 6.65 22.58 0.15 5.56 16 13 O -0.23 -13.64 9.76 -22.74 -0.22 -13.87 16 14 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 15 H 0.10 5.32 5.21 -2.91 -0.02 5.31 16 16 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 17 N -0.92 -56.06 13.67 21.61 0.30 -55.77 16 18 Si 1.02 42.00 29.55 68.60 2.03 44.02 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 C -0.18 -7.44 9.65 22.39 0.22 -7.22 16 23 C -0.15 -2.96 4.75 -10.79 -0.05 -3.02 16 24 C -0.18 -2.78 9.57 30.62 0.29 -2.49 16 25 C -0.16 -2.14 9.39 30.62 0.29 -1.85 16 26 H 0.07 1.08 7.56 -2.39 -0.02 1.06 16 27 H 0.09 1.12 7.29 -2.38 -0.02 1.10 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.90 6.97 -2.38 -0.02 0.88 16 30 H 0.09 0.86 7.07 -2.39 -0.02 0.84 16 31 H 0.07 0.87 7.57 -2.38 -0.02 0.85 16 32 H 0.41 8.76 7.30 -92.71 -0.68 8.08 16 33 H 0.09 2.21 8.09 -2.38 -0.02 2.19 16 34 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.09 2.16 7.47 -2.38 -0.02 2.14 16 41 H 0.11 1.43 5.85 -2.39 -0.01 1.42 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.11 1.12 7.07 -2.39 -0.02 1.10 16 Total: -1.00 -72.90 360.68 4.57 -68.33 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.34 Total: 32.04 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.66 Total: -34.80 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -2.19 Total: -75.73 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.27 Total: -33.87 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -72.90 4.57 -68.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771702441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.548 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds