Wall clock time and date at job start Tue Mar 31 2020 09:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.50698 * 109.47141 * 119.99761 * 2 1 3 5 5 C 1.37984 * 120.07745 * 305.01039 * 4 2 1 6 6 C 1.38335 * 120.14982 * 180.25577 * 5 4 2 7 7 C 1.38387 * 120.28877 * 359.73924 * 6 5 4 8 8 C 1.37935 * 120.14438 * 0.02562 * 7 6 5 9 9 C 1.39558 * 120.07309 * 124.77572 * 4 2 1 10 10 C 1.47840 * 120.14305 * 0.02728 * 9 4 2 11 11 O 1.21548 * 120.00343 * 47.67175 * 10 9 4 12 12 N 1.34778 * 119.99698 * 227.67597 * 10 9 4 13 13 C 1.47422 * 125.64959 * 355.09027 * 12 10 9 14 14 C 1.54909 * 104.83571 * 155.90966 * 13 12 10 15 15 C 1.55156 * 101.57971 * 37.00782 * 14 13 12 16 16 O 1.42896 * 110.72237 * 82.86562 * 15 14 13 17 17 C 1.50708 * 110.71954 * 205.96193 * 15 14 13 18 18 H 1.07992 * 120.00043 * 116.15707 * 17 15 14 19 19 C 1.37876 * 119.99910 * 296.15869 * 17 15 14 20 20 N 1.31518 * 119.99917 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00170 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47490 * 59.99577 * 21 19 17 23 23 H 1.48498 * 109.47455 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47019 * 299.99895 * 21 19 17 25 25 C 1.47026 * 125.64652 * 175.13436 * 12 10 9 26 26 H 1.08994 * 109.47892 * 299.99877 * 1 2 3 27 27 H 1.09002 * 109.47159 * 60.00348 * 1 2 3 28 28 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47430 * 240.00334 * 2 1 3 30 30 H 1.08995 * 109.47326 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47574 * 300.00150 * 3 2 1 32 32 H 1.09006 * 109.47107 * 59.99585 * 3 2 1 33 33 H 1.08004 * 119.92359 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.85483 * 179.76808 * 6 5 4 35 35 H 1.07993 * 119.92619 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.07020 * 179.97438 * 8 7 6 37 37 H 1.08997 * 110.36898 * 37.06529 * 13 12 10 38 38 H 1.09001 * 110.36624 * 274.74393 * 13 12 10 39 39 H 1.09002 * 111.00070 * 278.93538 * 14 13 12 40 40 H 1.08997 * 111.04400 * 155.09795 * 14 13 12 41 41 H 0.96706 * 114.00046 * 61.45360 * 16 15 14 42 42 H 0.96997 * 120.00031 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.88340 * 61.60475 * 25 12 10 44 44 H 1.09005 * 109.87857 * 300.43563 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6170 -0.3035 2.4818 6 6 2.0813 -0.9511 3.6126 7 6 2.9603 -2.0137 3.4970 8 6 3.3796 -2.4335 2.2518 9 6 2.9149 -1.7843 1.1067 10 6 3.3605 -2.2286 -0.2311 11 8 3.7522 -1.4133 -1.0431 12 7 3.3325 -3.5377 -0.5504 13 6 2.9805 -4.6381 0.3653 14 6 2.4981 -5.7840 -0.5586 15 6 3.4571 -5.6329 -1.7689 16 8 4.7032 -6.2829 -1.5108 17 6 2.8232 -6.1781 -3.0228 18 1 2.6081 -5.5181 -3.8500 19 6 2.5178 -7.5195 -3.1137 20 7 2.7801 -8.3234 -2.1064 21 14 1.7328 -8.1954 -4.6681 22 1 2.6339 -7.9536 -5.8233 23 1 1.5069 -9.6551 -4.5142 24 1 0.4338 -7.5151 -4.9027 25 6 3.6488 -4.1049 -1.8694 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 0.9313 0.5253 2.5789 34 1 1.7560 -0.6263 4.5899 35 1 3.3187 -2.5153 4.3837 36 1 4.0659 -3.2627 2.1630 37 1 2.1798 -4.3305 1.0379 38 1 3.8553 -4.9525 0.9345 39 1 1.4616 -5.6327 -0.8601 40 1 2.6253 -6.7541 -0.0781 41 1 4.6267 -7.2355 -1.3626 42 1 2.5649 -9.2671 -2.1702 43 1 4.6817 -3.8775 -2.1327 44 1 2.9736 -3.6952 -2.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771800452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:27 Heat of formation + Delta-G solvation = -68.644467 kcal Electronic energy + Delta-G solvation = -25513.198473 eV Core-core repulsion = 22008.839725 eV Total energy + Delta-G solvation = -3504.358749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36123 -38.61252 -37.12405 -35.39354 -34.28705 -32.20999 -31.40792 -29.84379 -29.49740 -28.28110 -27.09333 -25.38677 -23.65654 -23.35149 -21.94726 -20.27287 -19.64678 -19.01622 -17.35004 -16.96077 -16.28034 -15.58540 -15.47117 -14.97783 -14.75932 -14.31404 -14.12285 -13.93488 -13.71355 -13.52478 -13.36531 -13.01145 -12.47783 -12.36880 -12.13453 -12.09728 -11.96671 -11.77823 -11.54959 -11.36384 -11.31327 -11.10083 -10.88819 -10.69422 -10.64807 -10.59891 -10.51586 -10.13466 -9.49058 -9.34948 -8.90260 -8.72003 -8.68081 -8.24415 -8.02858 -6.31105 -4.38201 1.07151 1.35177 3.04801 3.20846 3.25614 3.28771 3.46812 3.82358 4.25397 4.64011 4.73147 4.83015 4.96004 4.98405 5.12642 5.25803 5.31656 5.42322 5.50708 5.54723 5.63385 5.71003 5.81134 5.83358 5.86577 5.89915 5.98470 6.03883 6.09833 6.14541 6.26319 6.32048 6.36387 6.42827 6.43372 6.65478 6.66495 6.86060 6.89964 6.95162 7.26318 7.30926 7.71152 7.99166 8.05104 8.55395 8.64039 9.28886 9.39075 10.76894 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.004057 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.296751 B = 6900.399015 C = 7437.670282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.134 4.134 4 C -0.027 4.027 5 C -0.124 4.124 6 C -0.104 4.104 7 C -0.131 4.131 8 C -0.086 4.086 9 C -0.115 4.115 10 C 0.565 3.435 11 O -0.544 6.544 12 N -0.600 5.600 13 C 0.095 3.905 14 C -0.136 4.136 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.122 3.878 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.384 0.616 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 11.411 11.146 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.122 4.122 7 C -0.149 4.149 8 C -0.104 4.104 9 C -0.118 4.118 10 C 0.354 3.646 11 O -0.424 6.424 12 N -0.332 5.332 13 C -0.028 4.028 14 C -0.175 4.175 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.537 5.537 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.234 0.766 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.466 12.316 10.698 16.677 hybrid contribution -0.657 -1.179 -0.551 1.458 sum -4.123 11.137 10.147 15.620 Atomic orbital electron populations 1.21868 0.94511 1.01998 1.01634 1.20376 0.95516 0.96716 0.96607 1.21727 1.01672 0.94506 1.01184 1.19861 0.94324 0.93276 0.95285 1.20901 1.01057 1.00666 0.91575 1.21242 0.96862 0.95685 0.98415 1.21053 0.98850 0.97840 0.97178 1.21385 0.98742 0.98592 0.91704 1.19871 1.00562 0.97874 0.93485 1.17922 0.78640 0.81210 0.86828 1.90729 1.48085 1.52344 1.51237 1.48587 1.65672 1.04969 1.13952 1.22592 0.98957 0.87938 0.93307 1.23330 1.00536 0.96437 0.97206 1.19446 0.81598 0.86002 0.92151 1.86123 1.32429 1.26819 1.94107 1.21478 1.40679 0.94146 1.01046 0.91799 1.24967 0.94518 0.96688 0.96722 1.69632 1.47996 1.05253 1.30774 0.86467 0.79779 0.77693 0.83009 1.19969 1.21091 1.20062 1.22106 1.00386 0.94654 0.82772 0.92735 0.92288 0.92568 0.88387 0.92238 0.92458 0.93090 0.85730 0.85947 0.85668 0.85327 0.91899 0.91899 0.91431 0.89436 0.76550 0.92107 0.91889 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.95 37.16 0.33 -1.31 16 2 C -0.07 -1.02 2.72 -91.77 -0.25 -1.27 16 3 C -0.13 -1.61 9.05 37.16 0.34 -1.28 16 4 C -0.03 -0.38 4.81 -104.22 -0.50 -0.88 16 5 C -0.12 -1.43 8.74 -39.64 -0.35 -1.77 16 6 C -0.10 -1.08 10.04 -39.49 -0.40 -1.48 16 7 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 8 C -0.09 -1.18 8.12 -39.19 -0.32 -1.50 16 9 C -0.11 -1.85 5.21 -104.97 -0.55 -2.40 16 10 C 0.57 11.01 6.64 -12.33 -0.08 10.93 16 11 O -0.54 -11.91 15.36 5.32 0.08 -11.83 16 12 N -0.60 -12.04 3.33 -171.63 -0.57 -12.61 16 13 C 0.09 1.73 5.40 -2.53 -0.01 1.71 16 14 C -0.14 -2.91 5.57 -24.58 -0.14 -3.05 16 15 C 0.25 5.93 0.85 -89.93 -0.08 5.85 16 16 O -0.59 -14.57 13.06 -35.23 -0.46 -15.03 16 17 C -0.54 -13.88 8.22 -34.44 -0.28 -14.16 16 18 H 0.06 1.66 7.56 -52.49 -0.40 1.26 16 19 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 20 N -0.90 -22.74 10.69 55.43 0.59 -22.15 16 21 Si 0.90 20.10 29.54 -169.99 -5.02 15.07 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.12 2.76 6.23 -3.06 -0.02 2.74 16 26 H 0.05 0.53 7.13 -51.93 -0.37 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.68 5.35 -51.93 -0.28 1.40 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 33 H 0.12 1.16 7.10 -52.48 -0.37 0.78 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.73 6.64 -52.48 -0.35 1.38 16 37 H 0.06 1.02 7.03 -51.93 -0.36 0.66 16 38 H 0.06 1.10 7.51 -51.93 -0.39 0.71 16 39 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 40 H 0.09 1.93 7.64 -51.93 -0.40 1.53 16 41 H 0.38 9.53 7.28 45.56 0.33 9.87 16 42 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 44 H 0.07 1.66 7.66 -51.93 -0.40 1.26 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -28.07 350.85 -8.77 -36.85 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.89 Total: 12.36 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.79 Total: -7.96 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.02 Total: -34.75 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.38 Total: -26.86 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.07 -8.77 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771800452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.798 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds