Wall clock time and date at job start Tue Mar 31 2020 09:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.50698 * 109.47141 * 119.99761 * 2 1 3 5 5 C 1.37984 * 120.07745 * 305.01039 * 4 2 1 6 6 C 1.38335 * 120.14982 * 180.25577 * 5 4 2 7 7 C 1.38387 * 120.28877 * 359.73924 * 6 5 4 8 8 C 1.37935 * 120.14438 * 0.02562 * 7 6 5 9 9 C 1.39558 * 120.07309 * 124.77572 * 4 2 1 10 10 C 1.47840 * 120.14305 * 0.02728 * 9 4 2 11 11 O 1.21548 * 120.00343 * 47.67175 * 10 9 4 12 12 N 1.34778 * 119.99698 * 227.67597 * 10 9 4 13 13 C 1.47422 * 125.64959 * 355.09027 * 12 10 9 14 14 C 1.54909 * 104.83571 * 155.90966 * 13 12 10 15 15 C 1.55156 * 101.57971 * 37.00782 * 14 13 12 16 16 O 1.42896 * 110.72237 * 82.86562 * 15 14 13 17 17 C 1.50708 * 110.71954 * 205.96193 * 15 14 13 18 18 H 1.07992 * 120.00043 * 116.15707 * 17 15 14 19 19 C 1.37876 * 119.99910 * 296.15869 * 17 15 14 20 20 N 1.31518 * 119.99917 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00170 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47490 * 59.99577 * 21 19 17 23 23 H 1.48498 * 109.47455 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47019 * 299.99895 * 21 19 17 25 25 C 1.47026 * 125.64652 * 175.13436 * 12 10 9 26 26 H 1.08994 * 109.47892 * 299.99877 * 1 2 3 27 27 H 1.09002 * 109.47159 * 60.00348 * 1 2 3 28 28 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47430 * 240.00334 * 2 1 3 30 30 H 1.08995 * 109.47326 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47574 * 300.00150 * 3 2 1 32 32 H 1.09006 * 109.47107 * 59.99585 * 3 2 1 33 33 H 1.08004 * 119.92359 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.85483 * 179.76808 * 6 5 4 35 35 H 1.07993 * 119.92619 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.07020 * 179.97438 * 8 7 6 37 37 H 1.08997 * 110.36898 * 37.06529 * 13 12 10 38 38 H 1.09001 * 110.36624 * 274.74393 * 13 12 10 39 39 H 1.09002 * 111.00070 * 278.93538 * 14 13 12 40 40 H 1.08997 * 111.04400 * 155.09795 * 14 13 12 41 41 H 0.96706 * 114.00046 * 61.45360 * 16 15 14 42 42 H 0.96997 * 120.00031 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.88340 * 61.60475 * 25 12 10 44 44 H 1.09005 * 109.87857 * 300.43563 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6170 -0.3035 2.4818 6 6 2.0813 -0.9511 3.6126 7 6 2.9603 -2.0137 3.4970 8 6 3.3796 -2.4335 2.2518 9 6 2.9149 -1.7843 1.1067 10 6 3.3605 -2.2286 -0.2311 11 8 3.7522 -1.4133 -1.0431 12 7 3.3325 -3.5377 -0.5504 13 6 2.9805 -4.6381 0.3653 14 6 2.4981 -5.7840 -0.5586 15 6 3.4571 -5.6329 -1.7689 16 8 4.7032 -6.2829 -1.5108 17 6 2.8232 -6.1781 -3.0228 18 1 2.6081 -5.5181 -3.8500 19 6 2.5178 -7.5195 -3.1137 20 7 2.7801 -8.3234 -2.1064 21 14 1.7328 -8.1954 -4.6681 22 1 2.6339 -7.9536 -5.8233 23 1 1.5069 -9.6551 -4.5142 24 1 0.4338 -7.5151 -4.9027 25 6 3.6488 -4.1049 -1.8694 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 0.9313 0.5253 2.5789 34 1 1.7560 -0.6263 4.5899 35 1 3.3187 -2.5153 4.3837 36 1 4.0659 -3.2627 2.1630 37 1 2.1798 -4.3305 1.0379 38 1 3.8553 -4.9525 0.9345 39 1 1.4616 -5.6327 -0.8601 40 1 2.6253 -6.7541 -0.0781 41 1 4.6267 -7.2355 -1.3626 42 1 2.5649 -9.2671 -2.1702 43 1 4.6817 -3.8775 -2.1327 44 1 2.9736 -3.6952 -2.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771800452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:26 Heat of formation + Delta-G solvation = -85.356974 kcal Electronic energy + Delta-G solvation = -25513.923182 eV Core-core repulsion = 22008.839725 eV Total energy + Delta-G solvation = -3505.083457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.67205 -39.99927 -38.74181 -36.52869 -35.93708 -34.20376 -32.60858 -31.18643 -30.72381 -30.01739 -28.01976 -27.18961 -25.02321 -24.35030 -23.37613 -21.74624 -21.04597 -20.38792 -19.21166 -18.43308 -17.41248 -17.16421 -16.92941 -16.54901 -16.23849 -15.97042 -15.37805 -14.99205 -14.94188 -14.79418 -14.59279 -14.46521 -13.91829 -13.87708 -13.52031 -13.29752 -13.26353 -13.16675 -13.01736 -12.93705 -12.71003 -12.49359 -12.48042 -12.29508 -12.08753 -12.01756 -11.75354 -11.60812 -11.31828 -10.87453 -10.63393 -10.19764 -9.89318 -9.73644 -9.60098 -8.26747 -6.40884 0.03805 0.42394 1.41914 1.43704 1.50763 1.63046 1.97780 2.38611 2.80445 2.98700 3.43884 3.69013 3.79696 3.85247 3.93296 4.11550 4.21112 4.27102 4.28217 4.33134 4.44449 4.49956 4.51225 4.55878 4.59778 4.76887 4.84472 4.87804 4.90001 4.93108 5.08439 5.11683 5.16859 5.19575 5.28353 5.36754 5.41578 5.44254 5.46720 5.53592 5.64986 5.73351 6.00532 6.04658 6.49412 6.61880 7.02096 7.29218 7.39893 8.79767 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.004057 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.296751 B = 6900.399015 C = 7437.670282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C -0.128 4.128 4 C -0.039 4.039 5 C -0.122 4.122 6 C -0.089 4.089 7 C -0.127 4.127 8 C -0.096 4.096 9 C -0.147 4.147 10 C 0.563 3.437 11 O -0.580 6.580 12 N -0.606 5.606 13 C 0.108 3.892 14 C -0.126 4.126 15 C 0.239 3.761 16 O -0.593 6.593 17 C -0.566 4.566 18 H 0.051 0.949 19 C 0.040 3.960 20 N -0.905 5.905 21 Si 0.959 3.041 22 H -0.278 1.278 23 H -0.276 1.276 24 H -0.273 1.273 25 C 0.129 3.871 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.044 0.956 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 12.281 14.098 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.139 4.139 6 C -0.106 4.106 7 C -0.144 4.144 8 C -0.114 4.114 9 C -0.150 4.150 10 C 0.354 3.646 11 O -0.462 6.462 12 N -0.337 5.337 13 C -0.013 4.013 14 C -0.164 4.164 15 C 0.199 3.801 16 O -0.402 6.402 17 C -0.604 4.604 18 H 0.069 0.931 19 C -0.162 4.162 20 N -0.544 5.544 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.201 1.201 24 H -0.198 1.198 25 C 0.006 3.994 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.068 13.183 13.674 19.658 hybrid contribution -0.138 -1.404 -1.435 2.013 sum -5.206 11.778 12.239 17.766 Atomic orbital electron populations 1.21827 0.92635 1.01635 1.03272 1.20339 0.97066 0.97194 0.95031 1.21688 1.00192 0.93770 1.02865 1.20023 0.94444 0.92927 0.96611 1.21227 1.00986 1.01231 0.90474 1.21741 0.94957 0.94167 0.99778 1.21423 0.98240 0.97896 0.96865 1.21460 0.99051 0.98724 0.92182 1.19717 1.03314 1.00191 0.91774 1.18643 0.77482 0.80318 0.88152 1.90691 1.49492 1.53062 1.52916 1.48632 1.66144 1.05849 1.13080 1.22544 1.00122 0.86151 0.92529 1.23107 0.99243 0.97405 0.96683 1.19548 0.81636 0.86197 0.92762 1.86110 1.33236 1.26678 1.94174 1.21688 1.42078 0.94833 1.01777 0.93075 1.25562 0.94718 0.96649 0.99243 1.69684 1.47681 1.05444 1.31609 0.85602 0.78813 0.77421 0.79728 1.20349 1.20051 1.19849 1.21821 0.98887 0.94349 0.84316 0.89979 0.91738 0.93898 0.92820 0.94486 0.91837 0.90294 0.82868 0.81929 0.82595 0.85680 0.89319 0.90772 0.92499 0.89996 0.76793 0.91747 0.93792 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.95 71.98 0.64 -2.31 16 2 C -0.08 -2.14 2.72 -11.54 -0.03 -2.17 16 3 C -0.13 -2.98 9.05 71.98 0.65 -2.32 16 4 C -0.04 -1.06 4.81 -19.61 -0.09 -1.15 16 5 C -0.12 -2.31 8.74 22.23 0.19 -2.11 16 6 C -0.09 -1.39 10.04 22.33 0.22 -1.17 16 7 C -0.13 -2.33 10.03 22.23 0.22 -2.11 16 8 C -0.10 -2.48 8.12 22.53 0.18 -2.29 16 9 C -0.15 -4.69 5.21 -20.09 -0.10 -4.80 16 10 C 0.56 22.90 6.64 86.78 0.58 23.47 16 11 O -0.58 -27.11 15.36 -3.87 -0.06 -27.17 16 12 N -0.61 -25.25 3.33 -815.20 -2.71 -27.96 16 13 C 0.11 3.96 5.40 86.86 0.47 4.43 16 14 C -0.13 -5.46 5.57 31.99 0.18 -5.28 16 15 C 0.24 11.82 0.85 -10.35 -0.01 11.81 16 16 O -0.59 -30.41 13.06 -148.98 -1.95 -32.35 16 17 C -0.57 -30.33 8.22 25.60 0.21 -30.12 16 18 H 0.05 2.79 7.56 -2.91 -0.02 2.77 16 19 C 0.04 2.05 5.29 84.65 0.45 2.50 16 20 N -0.91 -46.03 10.69 21.45 0.23 -45.80 16 21 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.13 6.17 6.23 86.73 0.54 6.71 16 26 H 0.08 1.30 7.13 -2.39 -0.02 1.28 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.95 5.35 -2.39 -0.01 1.94 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.36 7.70 -2.38 -0.02 1.34 16 33 H 0.15 2.01 7.10 -2.91 -0.02 1.99 16 34 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.13 3.23 6.64 -2.91 -0.02 3.21 16 37 H 0.09 2.80 7.03 -2.39 -0.02 2.78 16 38 H 0.07 2.55 7.51 -2.39 -0.02 2.53 16 39 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 40 H 0.08 3.63 7.64 -2.39 -0.02 3.61 16 41 H 0.38 19.44 7.28 -74.05 -0.54 18.90 16 42 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 43 H 0.04 2.21 8.07 -2.39 -0.02 2.19 16 44 H 0.06 2.94 7.66 -2.38 -0.02 2.92 16 Total: -1.00 -63.90 350.85 2.31 -61.60 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.47 Total: 35.14 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.30 Total: -6.92 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.48 Total: -73.76 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -2.01 Total: -59.52 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -63.90 2.31 -61.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771800452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.761 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds