Wall clock time and date at job start Tue Mar 31 2020 08:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35894 * 117.00156 * 2 1 4 4 C 1.38759 * 120.05707 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94718 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05643 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10870 * 359.73739 * 6 5 4 8 8 C 1.38163 * 120.05936 * 0.51043 * 7 6 5 9 9 C 1.50699 * 120.03217 * 179.76613 * 8 7 6 10 10 H 1.08998 * 110.88670 * 177.29696 * 9 8 7 11 11 C 1.55151 * 111.00432 * 301.18030 * 9 8 7 12 12 C 1.54331 * 102.94185 * 153.57505 * 11 9 8 13 13 N 1.47016 * 107.26920 * 337.80724 * 12 11 9 14 14 C 1.34777 * 125.64953 * 178.90729 * 13 12 11 15 15 O 1.21283 * 120.00463 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 359.74753 * 14 13 12 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 90.00195 * 22 20 18 24 24 H 1.48507 * 109.46904 * 209.99852 * 22 20 18 25 25 H 1.48494 * 109.47201 * 330.00027 * 22 20 18 26 26 C 1.47426 * 108.70680 * 359.16904 * 13 12 11 27 27 H 1.09005 * 109.47337 * 59.99885 * 1 2 3 28 28 H 1.09002 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47084 * 299.99509 * 1 2 3 30 30 H 1.08001 * 120.02552 * 359.95916 * 4 3 2 31 31 H 1.07998 * 119.97202 * 179.97438 * 5 4 3 32 32 H 1.07991 * 119.94651 * 179.97438 * 6 5 4 33 33 H 1.08006 * 119.97406 * 180.26184 * 7 6 5 34 34 H 1.09004 * 110.72089 * 35.21588 * 11 9 8 35 35 H 1.08996 * 110.87496 * 272.00614 * 11 9 8 36 36 H 1.09005 * 109.88016 * 218.38870 * 12 11 9 37 37 H 1.08999 * 110.01256 * 97.30099 * 12 11 9 38 38 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 39 39 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 40 40 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 41 41 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 42 42 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.36867 * 142.74049 * 26 13 12 44 44 H 1.09007 * 110.36455 * 265.06261 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0049 8 6 3.4311 1.2848 -0.0008 9 6 4.2537 0.0221 -0.0013 10 1 3.6133 -0.8588 0.0420 11 6 5.1901 -0.0311 -1.2372 12 6 6.3527 -0.9225 -0.7519 13 7 6.3577 -0.8716 0.7174 14 6 7.2102 -1.5350 1.5234 15 8 7.1215 -1.4183 2.7274 16 6 8.2697 -2.4266 0.9288 17 6 9.0920 -3.0609 2.0525 18 6 10.1519 -3.9521 1.4579 19 1 10.2308 -4.0560 0.3858 20 6 11.0207 -4.6347 2.2826 21 7 11.9454 -5.4128 1.7638 22 14 10.8836 -4.4555 4.1370 23 1 9.9599 -5.4903 4.6673 24 1 12.2246 -4.6272 4.7514 25 1 10.3572 -3.1065 4.4663 26 6 5.2719 0.0203 1.1633 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3204 0.0003 31 1 1.3340 4.5114 0.0011 32 1 3.7922 4.6380 0.0005 33 1 5.1344 2.5751 0.0088 34 1 5.5492 0.9660 -1.4922 35 1 4.6842 -0.4867 -2.0884 36 1 7.2980 -0.5423 -1.1393 37 1 6.2009 -1.9486 -1.0868 38 1 7.7955 -3.2108 0.3386 39 1 8.9246 -1.8357 0.2886 40 1 9.5662 -2.2768 2.6428 41 1 8.4371 -3.6519 2.6928 42 1 12.5569 -5.8927 2.3440 43 1 4.8102 -0.3685 2.0709 44 1 5.6534 1.0273 1.3322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291825607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:48 Heat of formation + Delta-G solvation = -54.535080 kcal Electronic energy + Delta-G solvation = -24141.086189 eV Core-core repulsion = 20637.339270 eV Total energy + Delta-G solvation = -3503.746920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80017 -39.58631 -37.93666 -37.00322 -33.47173 -33.06626 -31.23601 -30.45997 -30.14942 -28.67281 -27.53481 -26.08432 -23.81910 -22.76635 -22.29120 -20.94411 -20.24985 -18.74274 -18.40186 -17.20272 -16.91405 -16.20331 -16.07020 -16.00842 -15.51313 -14.88083 -14.73371 -14.31505 -14.05232 -13.95142 -13.60200 -13.28396 -13.15856 -13.02006 -12.65341 -12.43322 -12.36084 -12.14223 -11.85087 -11.79970 -11.53716 -11.39711 -11.33963 -10.96117 -10.93683 -10.74059 -10.10759 -9.99347 -9.74306 -9.23303 -9.15617 -9.08217 -8.49856 -8.46941 -8.36202 -5.99815 -3.98217 0.97367 1.12479 2.93616 3.15685 3.25942 3.40587 3.40972 3.47249 3.59057 4.31385 4.42269 4.53326 4.54347 4.57958 4.71678 4.77895 4.79487 4.87588 5.04494 5.08581 5.13835 5.21851 5.30022 5.35391 5.35786 5.38063 5.61882 5.68389 5.74205 5.83049 5.89402 5.95505 6.00995 6.12245 6.17697 6.19040 6.29514 6.45219 6.51295 6.74205 7.05264 7.41084 7.48034 7.77949 7.85994 8.53167 8.68069 9.03349 9.63473 11.13028 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002639 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.856436 B =10609.381458 C =10707.751122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.076 4.076 8 C -0.099 4.099 9 C -0.057 4.057 10 H 0.099 0.901 11 C -0.121 4.121 12 C 0.102 3.898 13 N -0.629 5.629 14 C 0.526 3.474 15 O -0.540 6.540 16 C -0.116 4.116 17 C 0.001 3.999 18 C -0.523 4.523 19 H 0.073 0.927 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 C 0.115 3.885 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.076 0.924 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.898 18.158 -8.685 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.102 4.102 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.100 4.100 9 C -0.076 4.076 10 H 0.117 0.883 11 C -0.159 4.159 12 C -0.022 4.022 13 N -0.366 5.366 14 C 0.317 3.683 15 O -0.416 6.416 16 C -0.156 4.156 17 C -0.037 4.037 18 C -0.561 4.561 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.008 4.008 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.633 17.839 -7.919 31.428 hybrid contribution -0.350 0.216 0.852 0.946 sum -24.983 18.055 -7.068 31.624 Atomic orbital electron populations 1.23067 0.78393 1.04087 1.01219 1.86091 1.21284 1.26704 1.88531 1.18831 0.91709 0.84315 0.96446 1.21211 0.99957 0.92359 1.09153 1.20933 0.94733 0.96910 0.97673 1.21056 0.93884 0.98435 1.03887 1.20925 1.00230 0.90995 0.97272 1.18966 0.90106 0.95112 1.05840 1.21112 0.95187 0.95952 0.95334 0.88269 1.22751 0.95155 1.00580 0.97429 1.22013 0.98986 1.00515 0.80647 1.48673 1.33188 1.47861 1.06836 1.21286 0.81384 0.79214 0.86408 1.90656 1.71874 1.64193 1.14864 1.21649 0.95045 0.97458 1.01443 1.19386 0.94804 0.96059 0.93456 1.21111 1.13809 1.25969 0.95227 0.90932 1.24970 0.94850 0.94599 0.98840 1.69913 1.19189 1.29735 1.35487 0.86797 0.77135 0.79726 0.85924 1.20242 1.21461 1.18507 1.22163 0.87076 0.94396 0.97189 0.92708 0.88135 0.92672 0.85530 0.85901 0.85808 0.85126 0.90413 0.89859 0.91038 0.91042 0.89699 0.89692 0.95829 0.96283 0.92750 0.90564 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.02 9.32 -19.41 -0.18 -3.20 16 3 C 0.13 1.30 6.66 -39.21 -0.26 1.04 16 4 C -0.21 -1.69 9.04 -39.43 -0.36 -2.04 16 5 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 6 C -0.15 -1.22 10.04 -39.56 -0.40 -1.62 16 7 C -0.08 -0.68 8.29 -39.61 -0.33 -1.01 16 8 C -0.10 -0.99 5.01 -104.47 -0.52 -1.52 16 9 C -0.06 -0.61 3.19 -89.74 -0.29 -0.89 16 10 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16 11 C -0.12 -1.11 6.37 -24.90 -0.16 -1.27 16 12 C 0.10 1.16 6.49 -3.06 -0.02 1.14 16 13 N -0.63 -9.60 3.33 -170.66 -0.57 -10.16 16 14 C 0.53 10.41 7.85 -10.98 -0.09 10.32 16 15 O -0.54 -12.78 16.24 5.55 0.09 -12.69 16 16 C -0.12 -2.38 4.83 -27.88 -0.13 -2.51 16 17 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 18 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 22 Si 0.88 23.01 27.47 -169.99 -4.67 18.34 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 26 C 0.11 1.53 6.31 -2.65 -0.02 1.51 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 1.05 7.02 -52.48 -0.37 0.68 16 34 H 0.08 0.63 7.12 -51.93 -0.37 0.26 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.62 8.14 -51.92 -0.42 1.19 16 39 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 41 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 44 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -35.68 357.04 -8.40 -44.08 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.73 Total: -3.72 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.50 Total: -10.43 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.21 Total: -37.76 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.09 Total: -15.89 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.67 Total: 18.34 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.68 -8.40 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291825607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.453 kcal (2) G-P(sol) polarization free energy of solvation -35.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds