Wall clock time and date at job start Tue Mar 31 2020 09:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48492 * 109.47154 * 89.99814 * 3 2 1 5 5 H 1.48503 * 109.46723 * 209.99824 * 3 2 1 6 6 H 1.48499 * 109.46891 * 329.99575 * 3 2 1 7 7 C 1.38809 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00291 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00139 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47154 * 172.74999 * 10 9 7 12 12 H 1.09001 * 109.87502 * 45.55320 * 11 10 9 13 13 C 1.54328 * 109.88221 * 166.56812 * 11 10 9 14 14 C 1.55159 * 102.94192 * 141.61028 * 13 11 10 15 15 C 1.54913 * 101.58036 * 324.49541 * 14 13 11 16 16 N 1.47023 * 109.88298 * 284.37579 * 11 10 9 17 17 C 1.34779 * 125.64649 * 61.59419 * 16 11 10 18 18 O 1.21683 * 120.00265 * 6.27620 * 17 16 11 19 19 C 1.46687 * 119.99487 * 186.27246 * 17 16 11 20 20 C 1.37757 * 126.21980 * 186.36495 * 19 17 16 21 21 C 1.40103 * 107.10239 * 179.84722 * 20 19 17 22 22 C 1.35322 * 107.93343 * 0.41733 * 21 20 19 23 23 N 1.36007 * 108.67801 * 359.74879 * 22 21 20 24 24 H 0.96996 * 125.63695 * 179.97438 * 23 22 21 25 25 C 1.51503 * 110.12779 * 179.76024 * 22 21 20 26 26 C 1.54412 * 105.02279 * 342.96420 * 25 22 21 27 27 C 1.51354 * 141.74017 * 179.97438 * 21 20 19 28 28 H 0.97010 * 119.99851 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00171 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47091 * 292.75264 * 10 9 7 31 31 H 1.09007 * 109.47001 * 52.75039 * 10 9 7 32 32 H 1.08996 * 110.71651 * 259.97352 * 13 11 10 33 33 H 1.08991 * 110.71832 * 23.24647 * 13 11 10 34 34 H 1.09002 * 111.00203 * 82.56970 * 14 13 11 35 35 H 1.08997 * 110.99905 * 206.38525 * 14 13 11 36 36 H 1.09002 * 110.36533 * 155.84488 * 15 14 13 37 37 H 1.08994 * 110.36727 * 278.06048 * 15 14 13 38 38 H 1.08003 * 126.44688 * 0.02562 * 20 19 17 39 39 H 1.09002 * 110.32711 * 101.88025 * 25 22 21 40 40 H 1.09001 * 110.33401 * 224.10020 * 25 22 21 41 41 H 1.09000 * 110.93979 * 267.68325 * 26 25 22 42 42 H 1.09001 * 110.94054 * 144.05674 * 26 25 22 43 43 H 1.09008 * 110.34024 * 316.27800 * 27 21 20 44 44 H 1.09001 * 110.33817 * 78.51663 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0738 -4.8140 0.1826 12 1 0.2115 -4.6730 -0.4691 13 6 1.7690 -6.1514 -0.1488 14 6 1.1867 -7.1187 0.9155 15 6 1.0511 -6.1845 2.1438 16 7 0.6384 -4.8841 1.5851 17 6 -0.0269 -3.9190 2.2502 18 8 -0.4165 -2.9298 1.6582 19 6 -0.2814 -4.0610 3.6879 20 6 -1.0482 -3.2215 4.4656 21 6 -1.0224 -3.7308 5.7705 22 6 -0.2501 -4.8420 5.7689 23 7 0.2070 -5.0529 4.5055 24 1 0.7826 -5.7824 4.2271 25 6 -0.1830 -5.4323 7.1626 26 6 -0.6572 -4.3005 8.0999 27 6 -1.5513 -3.4602 7.1626 28 1 -0.4850 -0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.5839 -3.7727 -0.9471 31 1 2.7785 -3.6604 0.8186 32 1 1.5089 -6.4824 -1.1542 33 1 2.8496 -6.0619 -0.0385 34 1 0.2139 -7.5006 0.6058 35 1 1.8780 -7.9362 1.1201 36 1 0.2899 -6.5630 2.8260 37 1 2.0079 -6.0921 2.6576 38 1 -1.5730 -2.3386 4.1317 39 1 -0.8470 -6.2932 7.2416 40 1 0.8406 -5.7192 7.4036 41 1 0.1877 -3.7139 8.4607 42 1 -1.2346 -4.7010 8.9332 43 1 -1.4616 -2.4007 7.4027 44 1 -2.5901 -3.7807 7.2421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:45 Heat of formation + Delta-G solvation = 51.149841 kcal Electronic energy + Delta-G solvation = -25494.553326 eV Core-core repulsion = 22027.681999 eV Total energy + Delta-G solvation = -3466.871326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59454 -39.66513 -37.10864 -36.02494 -34.44285 -31.75743 -31.28292 -30.87456 -28.67410 -27.75860 -27.25486 -24.87936 -23.55357 -22.59467 -21.65243 -20.84271 -20.50822 -19.11826 -19.01128 -17.38481 -16.77884 -16.52438 -15.82569 -15.74271 -15.07064 -14.34315 -14.08361 -13.71557 -13.46623 -13.42499 -13.32139 -13.16157 -12.99161 -12.93851 -12.74146 -12.49996 -12.13726 -11.75714 -11.60501 -11.44845 -11.29591 -11.20869 -11.07904 -10.93828 -10.70934 -10.53710 -10.31060 -9.84600 -9.40108 -8.89816 -8.66244 -8.62317 -8.28435 -7.80549 -6.63299 -5.78051 -2.74514 1.72861 2.78255 2.91544 3.19215 3.64431 3.71670 3.80043 3.84760 4.36604 4.41913 4.51443 4.58347 4.77262 4.84392 4.87944 4.96070 5.14639 5.17460 5.21063 5.33841 5.36010 5.47821 5.58978 5.59984 5.66079 5.71555 5.77324 5.84940 5.86859 5.95685 5.99102 6.05095 6.12226 6.17034 6.30887 6.43954 6.44402 6.74531 6.85214 6.95223 7.15244 7.48560 7.82139 8.06090 8.64397 9.14507 9.67044 10.50118 10.67355 11.72886 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.005145 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.733848 B = 5440.808337 C = 7322.380519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.079 2.921 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.335 4.335 8 H 0.054 0.946 9 N -0.734 5.734 10 C 0.152 3.848 11 C 0.130 3.870 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.129 4.129 15 C 0.088 3.912 16 N -0.619 5.619 17 C 0.594 3.406 18 O -0.467 6.467 19 C -0.026 4.026 20 C -0.088 4.088 21 C -0.193 4.193 22 C -0.002 4.002 23 N -0.528 5.528 24 H 0.410 0.590 25 C -0.037 4.037 26 C -0.115 4.115 27 C -0.049 4.049 28 H 0.265 0.735 29 H 0.383 0.617 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.148 0.852 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -19.394 13.240 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.911 3.089 4 H -0.227 1.227 5 H -0.225 1.225 6 H -0.215 1.215 7 C -0.466 4.466 8 H 0.072 0.928 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.027 3.973 12 H 0.093 0.907 13 C -0.162 4.162 14 C -0.167 4.167 15 C -0.035 4.035 16 N -0.356 5.356 17 C 0.382 3.618 18 O -0.337 6.337 19 C -0.139 4.139 20 C -0.114 4.114 21 C -0.200 4.200 22 C -0.119 4.119 23 N -0.128 5.128 24 H 0.251 0.749 25 C -0.075 4.075 26 C -0.153 4.153 27 C -0.087 4.087 28 H 0.077 0.923 29 H 0.223 0.777 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.085 -17.183 12.830 21.445 hybrid contribution 0.498 -2.105 -0.114 2.166 sum 0.582 -19.288 12.716 23.110 Atomic orbital electron populations 1.70675 1.05916 1.29465 1.52532 1.25589 0.97205 1.00425 1.00858 0.83267 0.73762 0.75852 0.75977 1.22669 1.22508 1.21537 1.19957 0.91417 0.86316 1.48941 0.92765 1.42743 1.06123 0.99833 1.89882 1.20926 0.93094 0.86119 0.97576 1.21913 0.97867 0.95657 0.81849 0.90669 1.22641 1.00757 0.93428 0.99378 1.22734 1.02034 0.97195 0.94704 1.22409 0.99170 0.84704 0.97263 1.48361 1.58228 1.16123 1.12915 1.16639 0.78741 0.82322 0.84118 1.90899 1.48453 1.27770 1.66535 1.20356 1.07831 0.94538 0.91127 1.20732 1.00517 0.99537 0.90606 1.20257 1.05470 0.99008 0.95236 1.21215 1.02486 1.00649 0.87515 1.41925 1.40485 1.23852 1.06505 0.74879 1.20644 1.01813 0.98249 0.86840 1.22324 0.99798 0.96179 0.96984 1.20457 0.98538 1.00372 0.89349 0.92264 0.77650 0.96387 0.96447 0.89869 0.90239 0.90454 0.89867 0.91319 0.91780 0.83467 0.90254 0.91163 0.90737 0.90294 0.91110 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -32.09 13.70 55.49 0.76 -31.33 16 2 C -0.04 -1.34 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 28.43 29.92 -169.99 -5.09 23.34 16 4 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 7 C -0.33 -10.52 9.99 -15.06 -0.15 -10.67 16 8 H 0.05 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.73 -20.90 4.41 -59.90 -0.26 -21.17 16 10 C 0.15 3.40 5.61 -4.04 -0.02 3.38 16 11 C 0.13 2.27 3.03 -66.95 -0.20 2.07 16 12 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 13 C -0.12 -1.46 6.44 -24.89 -0.16 -1.62 16 14 C -0.13 -1.19 7.09 -24.58 -0.17 -1.36 16 15 C 0.09 1.00 5.23 -2.53 -0.01 0.99 16 16 N -0.62 -10.51 3.07 -164.53 -0.50 -11.01 16 17 C 0.59 12.32 7.53 -12.85 -0.10 12.22 16 18 O -0.47 -12.14 13.33 5.20 0.07 -12.07 16 19 C -0.03 -0.47 6.81 -82.08 -0.56 -1.03 16 20 C -0.09 -1.59 10.66 -39.06 -0.42 -2.01 16 21 C -0.19 -2.84 6.89 -104.64 -0.72 -3.56 16 22 C 0.00 -0.02 8.01 -81.39 -0.65 -0.67 16 23 N -0.53 -7.22 5.37 -5.43 -0.03 -7.25 16 24 H 0.41 4.44 5.36 -40.82 -0.22 4.23 16 25 C -0.04 -0.32 6.79 -26.75 -0.18 -0.50 16 26 C -0.11 -0.93 7.12 -25.25 -0.18 -1.11 16 27 C -0.05 -0.54 6.78 -26.82 -0.18 -0.72 16 28 H 0.27 9.18 6.63 -40.82 -0.27 8.91 16 29 H 0.38 11.47 3.86 -40.82 -0.16 11.31 16 30 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 6.28 -51.93 -0.33 0.36 16 37 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 38 H 0.15 2.82 8.06 -52.48 -0.42 2.39 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -39.52 345.90 -10.13 -49.65 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.48 Total: 10.65 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.81 Total: -6.03 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -0.04 Total: -70.76 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 28.43 SS G_CDS: -5.09 Total: 23.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.52 -10.13 -49.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.799 kcal (2) G-P(sol) polarization free energy of solvation -39.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds