Wall clock time and date at job start Tue Mar 31 2020 08:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48506 * 109.46931 * 270.00372 * 3 2 1 5 5 H 1.48502 * 109.46911 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47260 * 150.00157 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7 12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9 13 13 C 1.47029 * 125.64752 * 193.59915 * 9 7 2 14 14 H 1.08996 * 110.01223 * 300.52040 * 13 9 7 15 15 C 1.53004 * 109.87592 * 61.61182 * 13 9 7 16 16 N 1.46503 * 109.46655 * 182.37647 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08454 * 16 15 13 18 18 O 1.21629 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.47262 * 120.00083 * 180.02562 * 17 16 15 20 20 C 1.36765 * 126.94312 * 359.69100 * 19 17 16 21 21 N 1.34663 * 108.39792 * 179.83373 * 20 19 17 22 22 H 0.96993 * 124.84834 * 180.19103 * 21 20 19 23 23 C 1.36445 * 110.29573 * 0.44609 * 21 20 19 24 24 C 1.34489 * 108.85687 * 359.72783 * 23 21 20 25 25 C 1.50700 * 126.83393 * 179.97438 * 24 23 21 26 26 C 1.53008 * 117.49754 * 8.66783 * 25 24 23 27 27 C 1.52996 * 117.50159 * 300.04463 * 25 24 23 28 28 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 30 30 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 31 31 H 1.09006 * 111.00134 * 278.93849 * 11 10 9 32 32 H 1.08991 * 111.00876 * 155.08095 * 11 10 9 33 33 H 1.08995 * 110.72233 * 206.13475 * 12 11 10 34 34 H 1.09002 * 110.71853 * 82.86190 * 12 11 10 35 35 H 1.08996 * 109.47497 * 302.37724 * 15 13 9 36 36 H 1.08997 * 109.47377 * 62.38352 * 15 13 9 37 37 H 0.96998 * 120.00190 * 5.09129 * 16 15 13 38 38 H 1.08006 * 125.80124 * 359.97438 * 20 19 17 39 39 H 1.08001 * 125.57152 * 179.74292 * 23 21 20 40 40 H 1.08997 * 115.54729 * 154.36871 * 25 24 23 41 41 H 1.08994 * 117.49554 * 359.97438 * 26 25 24 42 42 H 1.08993 * 117.50028 * 145.02046 * 26 25 24 43 43 H 1.09002 * 117.49942 * 214.97664 * 27 25 24 44 44 H 1.09004 * 117.49638 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2603 -4.0141 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7107 0.2799 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5266 4.0796 19 6 4.1868 -6.6491 3.4318 20 6 4.3568 -7.6655 2.5326 21 7 4.9740 -8.6865 3.1570 22 1 5.2133 -9.5284 2.7391 23 6 5.2095 -8.3696 4.4631 24 6 4.7492 -7.1282 4.6990 25 6 4.8005 -6.3787 6.0054 26 6 5.6147 -6.9976 7.1434 27 6 4.0860 -7.0020 7.2061 28 1 -0.4851 0.8400 0.0004 29 1 -0.6964 -2.3888 0.6254 30 1 -0.4267 -1.8586 -1.0633 31 1 0.0095 -4.1074 -1.8163 32 1 -1.2700 -4.3841 -0.5872 33 1 1.1287 -5.6529 -0.3433 34 1 0.3305 -4.9732 1.1128 35 1 3.2084 -2.9552 1.8180 36 1 1.6544 -3.5840 2.4160 37 1 3.1586 -5.6938 1.2364 38 1 4.0503 -7.6508 1.4970 39 1 5.6876 -9.0108 5.1888 40 1 4.7937 -5.2917 5.9243 41 1 6.1128 -7.9470 6.9473 42 1 6.1437 -6.3178 7.8113 43 1 3.6093 -6.3252 7.9152 44 1 3.5784 -7.9541 7.0510 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028233521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:16 Heat of formation + Delta-G solvation = 55.795781 kcal Electronic energy + Delta-G solvation = -24453.062283 eV Core-core repulsion = 20986.392420 eV Total energy + Delta-G solvation = -3466.669863 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32711 -38.84388 -37.44147 -37.02312 -34.04666 -32.43988 -31.07355 -29.76236 -29.23993 -28.18036 -24.92872 -24.04961 -23.25285 -22.43694 -22.21454 -20.25193 -19.70000 -19.46444 -18.80549 -18.47213 -16.76403 -15.93451 -15.62355 -15.31443 -14.90708 -14.64973 -14.35601 -14.20413 -14.06754 -13.87706 -13.73527 -12.90149 -12.82744 -12.37166 -12.02777 -11.84698 -11.70330 -11.62105 -11.57159 -11.24637 -10.91158 -10.82052 -10.74681 -10.34620 -10.18272 -10.07142 -9.88758 -9.79999 -9.67558 -9.41173 -8.72428 -8.56761 -8.37242 -8.32454 -6.80784 -5.72459 -3.08874 1.78356 2.23287 3.03867 3.42560 3.48947 3.50955 3.69687 3.78379 4.06442 4.52728 4.57467 4.84760 4.89385 4.98744 5.09494 5.17119 5.38054 5.44521 5.48161 5.56423 5.59135 5.66174 5.70001 5.83548 5.85284 5.97785 6.07276 6.13339 6.20401 6.28772 6.34996 6.50384 6.59451 6.66400 6.68928 6.78725 6.82356 6.92514 7.14601 7.27357 7.56069 7.64324 7.82916 8.02281 8.29758 8.75831 9.21518 9.82162 10.49187 11.39288 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.003315 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.908410 B = 8443.483354 C = 9340.861366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.112 3.888 16 N -0.723 5.723 17 C 0.580 3.420 18 O -0.543 6.543 19 C -0.212 4.212 20 C 0.042 3.958 21 N -0.551 5.551 22 H 0.416 0.584 23 C -0.026 4.026 24 C -0.077 4.077 25 C -0.074 4.074 26 C -0.183 4.183 27 C -0.172 4.172 28 H 0.253 0.747 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.390 0.610 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.519 -21.130 5.684 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.054 0.946 15 C -0.013 4.013 16 N -0.374 5.374 17 C 0.367 3.633 18 O -0.421 6.421 19 C -0.222 4.222 20 C -0.094 4.094 21 N -0.145 5.145 22 H 0.253 0.747 23 C -0.154 4.154 24 C -0.083 4.083 25 C -0.093 4.093 26 C -0.220 4.220 27 C -0.209 4.209 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.223 0.777 38 H 0.190 0.810 39 H 0.183 0.817 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.414 -20.371 6.276 22.916 hybrid contribution 0.576 0.154 -0.503 0.780 sum 8.990 -20.217 5.773 22.867 Atomic orbital electron populations 1.69932 1.05007 1.25241 1.56111 1.24890 0.95675 0.97830 1.01518 0.86147 0.78851 0.83445 0.77512 1.21591 1.21601 1.20498 1.18997 0.90425 0.82208 1.44409 0.90608 1.44487 1.05731 1.00784 1.80367 1.21472 0.84698 0.90256 0.98870 1.23010 0.97459 0.99675 0.98611 1.22600 0.97088 0.96892 0.99771 1.21121 0.94318 0.87950 0.92236 0.94622 1.22171 0.97359 0.82677 0.99116 1.45967 1.61243 1.19029 1.11180 1.17407 0.77802 0.85534 0.82530 1.90749 1.57634 1.49862 1.43874 1.20482 1.11520 0.95741 0.94492 1.21933 1.00717 0.88284 0.98447 1.41411 1.47452 1.15786 1.09873 0.74746 1.21420 1.09600 0.98290 0.86082 1.19651 1.02178 0.93326 0.93165 1.20408 1.03787 0.99580 0.85526 1.22987 0.94084 1.02568 1.02382 1.22966 0.94365 1.02595 1.00970 0.93645 0.95707 0.90781 0.92365 0.92398 0.92544 0.91772 0.91673 0.91665 0.77665 0.81037 0.81731 0.85802 0.89220 0.88729 0.88698 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.53 55.49 0.58 -26.35 16 2 C 0.00 -0.06 5.47 -17.44 -0.10 -0.15 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.43 9.76 -15.06 -0.15 -6.58 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.79 3.13 -162.57 -0.51 -15.30 16 10 C 0.17 4.14 5.43 -2.53 -0.01 4.12 16 11 C -0.15 -2.74 7.09 -24.58 -0.17 -2.92 16 12 C -0.13 -2.10 6.10 -24.89 -0.15 -2.26 16 13 C 0.15 3.04 3.22 -66.95 -0.22 2.82 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.24 5.07 -4.04 -0.02 2.22 16 16 N -0.72 -11.47 5.32 -61.43 -0.33 -11.80 16 17 C 0.58 10.07 7.81 -12.59 -0.10 9.97 16 18 O -0.54 -11.69 15.41 5.25 0.08 -11.61 16 19 C -0.21 -2.91 6.29 -103.35 -0.65 -3.56 16 20 C 0.04 0.39 11.40 -16.84 -0.19 0.20 16 21 N -0.55 -4.00 5.90 -12.84 -0.08 -4.08 16 22 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16 23 C -0.03 -0.24 11.26 -16.82 -0.19 -0.43 16 24 C -0.08 -0.98 6.02 -102.54 -0.62 -1.60 16 25 C -0.07 -0.97 5.78 -91.77 -0.53 -1.50 16 26 C -0.18 -1.77 10.03 -26.73 -0.27 -2.04 16 27 C -0.17 -1.86 10.23 -26.73 -0.27 -2.13 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 1.98 6.85 -51.93 -0.36 1.62 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 35 H 0.06 1.48 7.92 -51.93 -0.41 1.07 16 36 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.39 4.79 7.28 -40.82 -0.30 4.50 16 38 H 0.17 1.07 7.45 -52.48 -0.39 0.68 16 39 H 0.17 1.04 7.16 -52.49 -0.38 0.67 16 40 H 0.12 1.96 7.03 -51.93 -0.37 1.59 16 41 H 0.09 0.70 7.00 -51.93 -0.36 0.34 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -34.53 358.88 -10.17 -44.70 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.67 Total: 5.51 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.64 Total: -3.83 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.33 Total: -57.53 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.53 -10.17 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028233521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.499 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds