Wall clock time and date at job start Tue Mar 31 2020 08:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47242 * 2 1 4 4 C 1.38599 * 119.55097 * 124.99624 * 3 2 1 5 5 C 1.38584 * 119.35093 * 180.02562 * 4 3 2 6 6 C 1.38633 * 118.48740 * 0.02562 * 5 4 3 7 7 C 1.39266 * 119.06177 * 359.97438 * 6 5 4 8 8 C 1.48169 * 119.72218 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00264 * 5.84254 * 8 7 6 10 10 N 1.34784 * 120.00141 * 185.84434 * 8 7 6 11 11 C 1.46501 * 119.99518 * 4.87688 * 10 8 7 12 12 C 1.46495 * 120.00182 * 184.87360 * 10 8 7 13 13 C 1.52998 * 109.47473 * 276.53338 * 12 10 8 14 14 H 1.09005 * 113.03794 * 49.39449 * 13 12 10 15 15 C 1.53940 * 113.77153 * 181.14619 * 13 12 10 16 16 C 1.53943 * 86.29086 * 137.90789 * 15 13 12 17 17 N 1.47582 * 86.24031 * 336.33902 * 16 15 13 18 18 C 1.36937 * 134.49291 * 204.69287 * 17 16 15 19 19 H 1.07999 * 120.00355 * 186.21764 * 18 17 16 20 20 C 1.38816 * 119.99823 * 6.22145 * 18 17 16 21 21 N 1.31620 * 120.00151 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47489 * 89.99563 * 22 20 18 24 24 H 1.48495 * 109.47319 * 209.99741 * 22 20 18 25 25 H 1.48502 * 109.47301 * 330.00085 * 22 20 18 26 26 N 1.31499 * 119.54456 * 305.25335 * 3 2 1 27 27 H 1.08995 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47140 * 300.00249 * 1 2 3 29 29 H 1.09000 * 109.47016 * 59.99771 * 1 2 3 30 30 H 1.09001 * 109.47140 * 239.99751 * 2 1 3 31 31 H 1.09004 * 109.47405 * 119.99383 * 2 1 3 32 32 H 1.07994 * 120.32688 * 0.02856 * 4 3 2 33 33 H 1.07994 * 120.75645 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.46831 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46730 * 176.02871 * 11 10 8 36 36 H 1.09003 * 109.47415 * 296.02828 * 11 10 8 37 37 H 1.09001 * 109.47618 * 56.02978 * 11 10 8 38 38 H 1.09000 * 109.47045 * 156.52915 * 12 10 8 39 39 H 1.09008 * 109.46836 * 36.53803 * 12 10 8 40 40 H 1.09004 * 113.74317 * 23.56396 * 15 13 12 41 41 H 1.08994 * 113.84266 * 252.26773 * 15 13 12 42 42 H 1.08996 * 113.76892 * 90.69608 * 16 15 13 43 43 H 1.08998 * 113.77278 * 221.98367 * 16 15 13 44 44 H 0.97001 * 119.99738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3711 3.1424 0.9840 6 6 2.9292 3.9955 -0.0154 7 6 2.0447 3.5113 -0.9760 8 6 1.5626 4.4105 -2.0504 9 8 2.0187 5.5320 -2.1544 10 7 0.6180 3.9846 -2.9124 11 6 -0.0087 2.6740 -2.7234 12 6 0.2181 4.8323 -4.0383 13 6 -0.8285 5.8444 -3.5681 14 1 -0.5349 6.3711 -2.6601 15 6 -1.3407 6.7717 -4.6851 16 6 -2.7410 6.5598 -4.0817 17 7 -2.2044 5.3028 -3.5248 18 6 -2.7585 4.1147 -3.1292 19 1 -2.1451 3.3652 -2.6515 20 6 -4.1089 3.8736 -3.3425 21 7 -4.8567 4.7872 -3.9244 22 14 -4.8647 2.2526 -2.8036 23 1 -5.3614 2.3771 -1.4097 24 1 -5.9954 1.9103 -3.7033 25 1 -3.8381 1.1816 -2.8693 26 7 1.6259 2.2523 -0.9342 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 3.2369 1.1451 1.7526 33 1 4.0567 3.4892 1.7430 34 1 3.2667 5.0209 -0.0490 35 1 -0.7908 2.5343 -3.4695 36 1 0.7430 1.8924 -2.8342 37 1 -0.4444 2.6201 -1.7257 38 1 -0.2057 4.2116 -4.8278 39 1 1.0900 5.3625 -4.4216 40 1 -1.2270 6.3567 -5.6866 41 1 -0.9796 7.7971 -4.6067 42 1 -3.0092 7.2966 -3.3246 43 1 -3.5227 6.4117 -4.8268 44 1 -5.8003 4.6188 -4.0730 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:50 Heat of formation + Delta-G solvation = 50.977947 kcal Electronic energy + Delta-G solvation = -25537.873520 eV Core-core repulsion = 22070.994739 eV Total energy + Delta-G solvation = -3466.878780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.83421 -40.41947 -39.31179 -36.52076 -35.11388 -34.26919 -33.50088 -31.05864 -30.16700 -29.50017 -27.69201 -25.72807 -25.27590 -25.23135 -23.73171 -22.24963 -21.00364 -20.73535 -18.83933 -18.30012 -17.71023 -17.02906 -16.95264 -16.70124 -16.53140 -16.00280 -15.68642 -15.39914 -15.15836 -14.71242 -14.62902 -14.48806 -14.10880 -13.91617 -13.54198 -13.25165 -13.12531 -13.06073 -12.94512 -12.77961 -12.66960 -12.48298 -12.33643 -12.26320 -11.92668 -11.73524 -11.48035 -11.31199 -11.21525 -10.86285 -10.77432 -10.22028 -10.02874 -9.56255 -8.83089 -7.81767 -5.15756 -0.33641 0.26680 1.44693 1.46277 1.54628 1.68892 1.98300 2.49437 2.83688 3.00443 3.34272 3.42512 3.56529 3.81029 3.97252 4.04380 4.10574 4.24335 4.32590 4.38040 4.39295 4.44708 4.50004 4.55323 4.59901 4.66566 4.82960 4.89464 4.91419 4.98243 5.03278 5.05042 5.08501 5.10574 5.14432 5.25194 5.36555 5.46603 5.52489 5.64084 5.68664 5.74050 6.00820 6.35826 6.77235 6.98832 7.09454 7.69072 8.66067 9.34586 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.005479 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.579101 B = 5108.887803 C = 6821.691494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.065 4.065 3 C 0.108 3.892 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.129 4.129 7 C 0.057 3.943 8 C 0.555 3.445 9 O -0.572 6.572 10 N -0.587 5.587 11 C 0.114 3.886 12 C 0.126 3.874 13 C 0.130 3.870 14 H 0.028 0.972 15 C -0.129 4.129 16 C 0.144 3.856 17 N -0.624 5.624 18 C -0.220 4.220 19 H 0.098 0.902 20 C -0.072 4.072 21 N -0.956 5.956 22 Si 0.963 3.037 23 H -0.295 1.295 24 H -0.297 1.297 25 H -0.256 1.256 26 N -0.465 5.465 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.007 0.993 43 H 0.053 0.947 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.119 -9.490 8.825 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.032 4.032 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.150 4.150 7 C -0.080 4.080 8 C 0.344 3.656 9 O -0.452 6.452 10 N -0.315 5.315 11 C -0.029 4.029 12 C 0.003 3.997 13 C 0.023 3.977 14 H 0.046 0.954 15 C -0.168 4.168 16 C 0.018 3.982 17 N -0.351 5.351 18 C -0.348 4.348 19 H 0.116 0.884 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.791 3.209 23 H -0.223 1.223 24 H -0.224 1.224 25 H -0.180 1.180 26 N -0.178 5.178 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.196 0.804 33 H 0.196 0.804 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.512 -9.425 8.114 21.478 hybrid contribution -0.729 0.135 0.892 1.160 sum 16.782 -9.290 9.005 21.191 Atomic orbital electron populations 1.21729 0.95135 1.02438 1.01503 1.20575 0.95960 0.88784 1.04956 1.22020 0.93684 0.96991 0.90540 1.22657 0.96358 0.97287 0.99311 1.22010 0.97946 0.92894 0.97032 1.22219 0.96259 1.02238 0.94268 1.20940 0.98514 0.91810 0.96712 1.18437 0.79478 0.86011 0.81721 1.90699 1.60327 1.20526 1.73676 1.47774 1.37159 1.19610 1.26991 1.22007 0.97377 0.82577 1.00909 1.21835 0.97235 0.92859 0.87784 1.22709 0.86324 0.92899 0.95754 0.95399 1.23533 0.96068 0.98953 0.98213 1.22239 0.95317 0.86077 0.94552 1.46568 1.02612 1.10953 1.74934 1.19764 0.92872 0.91854 1.30330 0.88446 1.25581 0.97101 1.01178 1.02574 1.70022 1.05516 1.35311 1.49727 0.85292 0.78376 0.80474 0.76715 1.22318 1.22352 1.18031 1.67804 1.22576 1.02593 1.24782 0.90623 0.93632 0.93774 0.89369 0.87012 0.80369 0.80449 0.84069 0.91731 0.89829 0.93224 0.89507 0.89482 0.89161 0.90120 0.97564 0.92902 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.77 71.98 0.70 -2.21 16 2 C -0.07 -0.97 6.33 29.85 0.19 -0.79 16 3 C 0.11 2.22 6.18 42.70 0.26 2.48 16 4 C -0.14 -2.02 9.72 22.44 0.22 -1.80 16 5 C -0.07 -1.19 10.17 22.45 0.23 -0.97 16 6 C -0.13 -3.21 9.63 22.61 0.22 -3.00 16 7 C 0.06 1.79 6.64 41.89 0.28 2.06 16 8 C 0.56 20.98 7.60 86.88 0.66 21.64 16 9 O -0.57 -23.88 16.08 -3.76 -0.06 -23.94 16 10 N -0.59 -22.15 2.89 -849.81 -2.46 -24.60 16 11 C 0.11 4.01 7.11 127.77 0.91 4.92 16 12 C 0.13 4.81 5.17 86.38 0.45 5.25 16 13 C 0.13 5.68 4.50 45.02 0.20 5.89 16 14 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 15 C -0.13 -5.07 7.86 31.25 0.25 -4.83 16 16 C 0.14 7.19 7.67 86.48 0.66 7.86 16 17 N -0.62 -32.64 3.58 -690.67 -2.48 -35.11 16 18 C -0.22 -12.16 9.94 84.03 0.84 -11.33 16 19 H 0.10 5.05 4.31 -2.91 -0.01 5.04 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 21 N -0.96 -58.69 11.28 21.65 0.24 -58.44 16 22 Si 0.96 45.75 29.55 68.60 2.03 47.78 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 N -0.46 -13.01 5.57 -173.08 -0.96 -13.98 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 1.09 7.31 -2.39 -0.02 1.08 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 0.92 7.87 -2.39 -0.02 0.90 16 32 H 0.18 1.12 7.95 -2.91 -0.02 1.10 16 33 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.14 3.53 7.65 -2.91 -0.02 3.51 16 35 H 0.06 2.47 6.16 -2.39 -0.01 2.46 16 36 H 0.08 2.60 6.85 -2.39 -0.02 2.58 16 37 H 0.05 1.87 6.50 -2.39 -0.02 1.85 16 38 H 0.09 3.29 7.82 -2.39 -0.02 3.27 16 39 H 0.09 3.06 7.70 -2.38 -0.02 3.04 16 40 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.05 2.92 6.89 -2.39 -0.02 2.90 16 44 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -74.01 354.40 3.84 -70.17 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.00 Total: 16.61 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.53 Total: 21.53 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -5.65 Total: -132.14 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.01 3.84 -70.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.146 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds