Wall clock time and date at job start Tue Mar 31 2020 08:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50711 * 109.47083 * 2 1 4 4 C 1.38601 * 119.54515 * 125.00089 * 3 2 1 5 5 C 1.38579 * 119.35071 * 179.97438 * 4 3 2 6 6 C 1.38640 * 118.48622 * 0.02562 * 5 4 3 7 7 C 1.39265 * 119.06147 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72338 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99666 * 354.78559 * 8 7 6 10 10 N 1.34775 * 120.00078 * 174.78291 * 8 7 6 11 11 C 1.46501 * 119.99903 * 5.08118 * 10 8 7 12 12 C 1.46500 * 119.99941 * 185.07771 * 10 8 7 13 13 C 1.53000 * 109.46832 * 84.24001 * 12 10 8 14 14 H 1.09005 * 112.96505 * 310.96325 * 13 12 10 15 15 C 1.53947 * 113.76677 * 179.28708 * 13 12 10 16 16 C 1.53949 * 86.29109 * 222.08782 * 15 13 12 17 17 N 1.47577 * 113.77261 * 82.64547 * 13 12 10 18 18 C 1.36935 * 134.49168 * 318.93611 * 17 13 12 19 19 H 1.08005 * 120.00067 * 2.93549 * 18 17 13 20 20 C 1.38817 * 120.00303 * 182.94211 * 18 17 13 21 21 N 1.31622 * 119.99546 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47064 * 119.99801 * 22 20 18 25 25 H 1.48498 * 109.47086 * 239.99835 * 22 20 18 26 26 N 1.31491 * 119.54846 * 304.72961 * 3 2 1 27 27 H 1.08991 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46824 * 299.99841 * 1 2 3 29 29 H 1.09001 * 109.47155 * 59.99389 * 1 2 3 30 30 H 1.09005 * 109.47214 * 240.00546 * 2 1 3 31 31 H 1.08992 * 109.47454 * 120.00097 * 2 1 3 32 32 H 1.07999 * 120.32438 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.76366 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.46434 * 180.02562 * 6 5 4 35 35 H 1.08991 * 109.47317 * 57.03641 * 11 10 8 36 36 H 1.09005 * 109.47007 * 177.04375 * 11 10 8 37 37 H 1.09001 * 109.46982 * 297.03792 * 11 10 8 38 38 H 1.08994 * 109.46918 * 204.23706 * 12 10 8 39 39 H 1.09000 * 109.47285 * 324.23945 * 12 10 8 40 40 H 1.09001 * 113.74355 * 336.43972 * 15 13 12 41 41 H 1.09003 * 113.74283 * 107.63832 * 15 13 12 42 42 H 1.09004 * 113.76504 * 137.90316 * 16 15 13 43 43 H 1.08996 * 113.77055 * 269.19548 * 16 15 13 44 44 H 0.96996 * 119.99874 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3720 3.1420 0.9835 6 6 2.9309 3.9950 -0.0164 7 6 2.0463 3.5109 -0.9770 8 6 1.5659 4.4095 -2.0526 9 8 1.8675 5.5866 -2.0408 10 7 0.7944 3.9215 -3.0441 11 6 0.3385 2.5299 -3.0000 12 6 0.4115 4.7826 -4.1657 13 6 1.5282 4.7842 -5.2116 14 1 2.5131 4.9675 -4.7820 15 6 1.2196 5.6489 -6.4474 16 6 1.8184 4.4990 -7.2775 17 7 1.4852 3.6294 -6.1296 18 6 1.2360 2.2916 -5.9777 19 1 0.9622 1.8998 -5.0091 20 6 1.3354 1.4387 -7.0684 21 7 1.6688 1.9162 -8.2488 22 14 0.9961 -0.3864 -6.8610 23 1 0.6442 -0.6668 -5.4459 24 1 -0.1330 -0.7830 -7.7404 25 1 2.2079 -1.1604 -7.2320 26 7 1.6341 2.2495 -0.9401 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2363 1.1452 1.7531 33 1 4.0577 3.4889 1.7424 34 1 3.2691 5.0201 -0.0505 35 1 -0.2119 2.3569 -2.0754 36 1 -0.3120 2.3335 -3.8524 37 1 1.2004 1.8638 -3.0398 38 1 -0.5071 4.4062 -4.6157 39 1 0.2498 5.7985 -3.8053 40 1 0.1546 5.8056 -6.6186 41 1 1.7975 6.5721 -6.4925 42 1 1.2544 4.2700 -8.1818 43 1 2.8888 4.5981 -7.4575 44 1 1.7386 1.3203 -9.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:55 Heat of formation + Delta-G solvation = 70.716506 kcal Electronic energy + Delta-G solvation = -25533.223980 eV Core-core repulsion = 22067.201128 eV Total energy + Delta-G solvation = -3466.022852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73594 -39.05682 -37.62704 -35.05692 -34.26210 -32.59381 -32.13193 -30.09145 -28.47633 -27.68877 -26.29551 -24.67841 -24.19188 -23.24917 -22.30126 -21.34620 -19.57748 -18.99270 -17.20516 -16.76834 -16.56589 -15.98866 -15.54109 -15.32136 -14.83130 -14.70212 -14.46098 -13.95000 -13.81937 -13.52412 -13.39379 -13.00054 -12.81376 -12.49775 -12.34905 -12.12291 -11.86788 -11.52467 -11.38259 -11.29065 -11.12084 -11.04803 -10.91451 -10.67670 -10.43657 -10.07303 -9.96336 -9.88772 -9.61445 -9.23008 -9.06953 -9.05731 -8.72863 -8.07773 -6.78102 -5.69615 -2.99802 0.67156 1.14426 2.91868 3.32656 3.40089 3.44168 3.47855 3.89363 4.04288 4.46763 4.49412 4.68170 4.86333 4.99054 5.11911 5.20321 5.24117 5.27316 5.36219 5.49968 5.68179 5.70347 5.78602 5.81482 5.86704 5.94674 5.96884 6.02517 6.04652 6.12465 6.16492 6.27158 6.33472 6.47987 6.53536 6.64119 6.70937 6.78991 7.05758 7.34947 7.50717 7.66384 7.72221 7.84342 8.06337 8.46137 9.12212 9.79433 10.71502 11.48466 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.005536 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.049537 B = 5056.652078 C = 6652.134983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.124 3.876 4 C -0.155 4.155 5 C -0.081 4.081 6 C -0.121 4.121 7 C 0.093 3.907 8 C 0.562 3.438 9 O -0.545 6.545 10 N -0.578 5.578 11 C 0.100 3.900 12 C 0.116 3.884 13 C 0.128 3.872 14 H 0.045 0.955 15 C -0.159 4.159 16 C 0.162 3.838 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.092 0.908 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.293 1.293 26 N -0.443 5.443 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 0.067 18.185 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.016 4.016 4 C -0.175 4.175 5 C -0.107 4.107 6 C -0.142 4.142 7 C -0.045 4.045 8 C 0.349 3.651 9 O -0.424 6.424 10 N -0.307 5.307 11 C -0.043 4.043 12 C -0.007 4.007 13 C 0.020 3.980 14 H 0.062 0.938 15 C -0.198 4.198 16 C 0.036 3.964 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.109 0.891 20 C -0.208 4.208 21 N -0.569 5.569 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.220 1.220 26 N -0.156 5.156 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.258 0.065 17.388 17.434 hybrid contribution 0.816 -0.943 0.660 1.411 sum -0.442 -0.878 18.049 18.075 Atomic orbital electron populations 1.21704 0.94007 1.01869 1.02749 1.20500 0.97189 0.90106 1.03285 1.21446 0.93474 0.96381 0.90283 1.22159 0.98480 0.96885 0.99991 1.21566 0.98190 0.93270 0.97698 1.22086 0.96542 1.01749 0.93843 1.21257 0.96442 0.91031 0.95817 1.17871 0.79244 0.86532 0.81498 1.90736 1.58505 1.15888 1.77249 1.47675 1.48451 1.13525 1.21013 1.22152 1.00403 0.80598 1.01108 1.22038 0.98989 0.94092 0.85588 1.22592 0.95628 0.88575 0.91163 0.93808 1.23771 1.00810 0.97138 0.98066 1.22158 0.96382 0.84813 0.93003 1.46226 1.80748 1.02684 1.03186 1.19455 1.38424 0.81450 0.95651 0.89057 1.24792 1.02460 0.97642 0.95887 1.69844 1.54245 1.33479 0.99349 0.86194 0.77417 0.85785 0.77375 1.20291 1.21851 1.22003 1.67992 1.22781 1.02540 1.22239 0.92269 0.93081 0.91191 0.89588 0.90445 0.84662 0.84320 0.83647 0.92151 0.90532 0.91123 0.89624 0.90604 0.90714 0.92959 0.91267 0.95782 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.77 37.16 0.36 -1.04 16 2 C -0.07 -0.70 6.33 -27.88 -0.18 -0.88 16 3 C 0.12 1.49 6.18 -82.60 -0.51 0.98 16 4 C -0.16 -1.54 9.72 -39.32 -0.38 -1.92 16 5 C -0.08 -0.83 10.17 -39.31 -0.40 -1.23 16 6 C -0.12 -1.61 9.63 -39.05 -0.38 -1.99 16 7 C 0.09 1.49 6.68 -83.01 -0.55 0.93 16 8 C 0.56 10.48 7.61 -12.18 -0.09 10.38 16 9 O -0.55 -11.11 15.98 5.35 0.09 -11.03 16 10 N -0.58 -10.77 2.89 -182.58 -0.53 -11.29 16 11 C 0.10 1.74 7.21 59.85 0.43 2.18 16 12 C 0.12 2.20 5.26 -4.04 -0.02 2.17 16 13 C 0.13 2.76 4.49 -66.86 -0.30 2.46 16 14 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.16 -3.12 7.86 -25.79 -0.20 -3.33 16 16 C 0.16 3.91 7.45 -2.84 -0.02 3.89 16 17 N -0.60 -15.34 3.58 -169.73 -0.61 -15.95 16 18 C -0.22 -6.02 10.29 -15.06 -0.15 -6.18 16 19 H 0.09 2.32 3.77 -52.48 -0.20 2.12 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.92 -27.52 11.47 55.49 0.64 -26.88 16 22 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 N -0.44 -6.59 5.50 -6.06 -0.03 -6.63 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.79 7.18 -51.93 -0.37 0.42 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.14 0.92 7.95 -52.49 -0.42 0.50 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.85 7.65 -52.48 -0.40 1.45 16 35 H 0.06 0.93 6.28 -51.93 -0.33 0.61 16 36 H 0.08 1.40 6.41 -51.93 -0.33 1.07 16 37 H 0.07 1.34 6.58 -51.93 -0.34 1.00 16 38 H 0.09 1.60 7.78 -51.93 -0.40 1.20 16 39 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.81 7.31 -51.93 -0.38 1.43 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -32.79 354.09 -9.12 -41.91 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.49 Total: 1.60 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.49 Total: 6.02 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.53 Total: -60.75 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -9.12 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.627 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds