Wall clock time and date at job start Tue Mar 31 2020 07:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36442 * 124.85487 * 2 1 4 4 C 1.34482 * 108.85820 * 179.68707 * 3 2 1 5 5 C 1.46688 * 106.33246 * 0.43497 * 4 3 2 6 6 C 1.47265 * 126.94022 * 179.82524 * 5 4 3 7 7 O 1.21627 * 119.99961 * 218.67924 * 6 5 4 8 8 N 1.34936 * 119.99838 * 38.68459 * 6 5 4 9 9 C 1.44789 * 120.11423 * 176.31817 * 8 6 5 10 10 C 1.51404 * 113.20298 * 268.15819 * 9 8 6 11 11 C 1.51239 * 114.18711 * 296.79175 * 10 9 8 12 12 H 1.09699 * 110.63754 * 178.25153 * 11 10 9 13 13 C 1.54094 * 108.49400 * 300.15476 * 11 10 9 14 14 C 1.53981 * 104.89654 * 93.62913 * 13 11 10 15 15 C 1.52066 * 105.59568 * 10.60436 * 14 13 11 16 16 H 1.09369 * 108.33870 * 123.89334 * 15 14 13 17 17 C 1.49329 * 120.08150 * 355.91276 * 8 6 5 18 18 N 1.47745 * 109.51844 * 6.00428 * 15 14 13 19 19 C 1.37169 * 127.10962 * 158.78371 * 18 15 14 20 20 H 1.08002 * 120.00257 * 180.02562 * 19 18 15 21 21 C 1.38813 * 119.99818 * 0.02920 * 19 18 15 22 22 N 1.31611 * 120.00223 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99674 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47428 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47090 * 119.99902 * 23 21 19 26 26 H 1.48500 * 109.47107 * 239.99352 * 23 21 19 27 27 C 1.34661 * 124.85061 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47370 * 270.02281 * 1 2 3 29 29 H 1.09003 * 109.46531 * 30.02822 * 1 2 3 30 30 H 1.09002 * 109.46660 * 150.02007 * 1 2 3 31 31 H 1.08008 * 125.56660 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.83581 * 180.27046 * 4 3 2 33 33 H 1.08930 * 109.07821 * 146.32425 * 9 8 6 34 34 H 1.09341 * 108.45943 * 28.74699 * 9 8 6 35 35 H 1.09155 * 108.83330 * 58.51823 * 10 9 8 36 36 H 1.09337 * 108.47889 * 175.66123 * 10 9 8 37 37 H 1.09319 * 110.68496 * 334.36777 * 13 11 10 38 38 H 1.09361 * 110.58711 * 212.76543 * 13 11 10 39 39 H 1.09080 * 110.61169 * 251.01645 * 14 13 11 40 40 H 1.09296 * 110.25649 * 129.56290 * 14 13 11 41 41 H 1.09105 * 109.47210 * 253.49556 * 17 8 6 42 42 H 1.09041 * 109.58612 * 13.32441 * 17 8 6 43 43 H 0.96998 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.07998 * 125.79993 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1196 0.0000 4 6 3.5375 0.7491 0.0070 5 6 3.5462 -0.7178 0.0009 6 6 4.7284 -1.5959 0.0014 7 8 4.7286 -2.6159 -0.6611 8 7 5.8113 -1.2689 0.7370 9 6 6.9436 -2.1689 0.8027 10 6 6.8688 -3.1380 1.9635 11 6 6.8956 -2.4782 3.3242 12 1 6.8075 -3.2286 4.1195 13 6 8.2108 -1.6864 3.4577 14 6 7.8588 -0.2559 3.0098 15 6 6.3422 -0.2220 2.9044 16 1 5.9709 0.5859 3.5413 17 6 5.8490 0.0267 1.4786 18 7 5.7843 -1.4967 3.4009 19 6 4.5072 -1.7230 3.8475 20 1 4.2204 -2.7072 4.1875 21 6 3.5834 -0.6870 3.8624 22 7 3.9329 0.5124 3.4485 23 14 1.8440 -0.9954 4.4699 24 1 1.7065 -2.4169 4.8770 25 1 1.5637 -0.1181 5.6348 26 1 0.8792 -0.6961 3.3814 27 6 2.2345 -1.1051 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.8829 2.1373 -0.0004 32 1 4.3981 1.4015 0.0129 33 1 7.8592 -1.5840 0.8819 34 1 6.9849 -2.7418 -0.1277 35 1 5.9519 -3.7236 1.8751 36 1 7.7152 -3.8267 1.8951 37 1 8.9844 -2.1112 2.8126 38 1 8.5573 -1.6885 4.4949 39 1 8.3143 -0.0328 2.0441 40 1 8.2007 0.4684 3.7535 41 1 6.5269 0.7158 0.9726 42 1 4.8492 0.4610 1.5067 43 1 3.2875 1.2364 3.4592 44 1 1.8767 -2.1241 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045754276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:30 Heat of formation + Delta-G solvation = 67.432882 kcal Electronic energy + Delta-G solvation = -27360.019292 eV Core-core repulsion = 23893.854051 eV Total energy + Delta-G solvation = -3466.165241 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59528 -39.26385 -37.39014 -33.70196 -33.11972 -32.19374 -31.46014 -29.29267 -28.57834 -27.24612 -26.28768 -25.20390 -23.67960 -22.64743 -20.66931 -19.80715 -19.42184 -18.89862 -18.00810 -17.12382 -16.08129 -15.50855 -15.01119 -14.91146 -14.64555 -14.44606 -14.04002 -13.72398 -13.48323 -12.94653 -12.70746 -12.47713 -12.31164 -12.26191 -11.93511 -11.80857 -11.70304 -11.40491 -11.25965 -11.14866 -10.96146 -10.80468 -10.72629 -10.62403 -10.09723 -9.78448 -9.52685 -9.40145 -9.35884 -8.89502 -8.55890 -7.76313 -7.69096 -7.39448 -6.73499 -5.62031 -2.96598 2.69171 3.15902 3.36805 3.38379 3.43934 3.46048 4.01129 4.47351 4.55227 4.97879 5.32330 5.36135 5.43045 5.46271 5.56512 5.58781 5.59954 5.73482 5.77072 5.83065 6.00954 6.06742 6.15332 6.15931 6.30622 6.38069 6.38940 6.55177 6.59218 6.65190 6.68352 6.77178 6.87648 6.96370 7.06270 7.17820 7.44362 7.49360 7.62280 7.69811 7.82335 7.84799 7.92044 8.35055 8.54887 9.26328 9.32719 9.87407 10.58912 11.45239 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008143 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.064190 B = 3437.911250 C = 4358.160198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C -0.024 4.024 4 C -0.145 4.145 5 C -0.192 4.192 6 C 0.597 3.403 7 O -0.584 6.584 8 N -0.573 5.573 9 C 0.132 3.868 10 C -0.143 4.143 11 C 0.154 3.846 12 H 0.053 0.947 13 C -0.125 4.125 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.104 0.896 17 C 0.091 3.909 18 N -0.577 5.577 19 C -0.204 4.204 20 H 0.072 0.928 21 C 0.002 3.998 22 N -0.909 5.909 23 Si 0.902 3.098 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.294 1.294 27 C 0.055 3.945 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.145 0.855 43 H 0.249 0.751 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 2.422 -4.926 5.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.127 5.127 3 C -0.150 4.150 4 C -0.169 4.169 5 C -0.202 4.202 6 C 0.387 3.613 7 O -0.467 6.467 8 N -0.302 5.302 9 C 0.008 3.992 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.071 0.929 13 C -0.163 4.163 14 C -0.169 4.169 15 C 0.048 3.952 16 H 0.121 0.879 17 C -0.031 4.031 18 N -0.299 5.299 19 C -0.332 4.332 20 H 0.090 0.910 21 C -0.194 4.194 22 N -0.558 5.558 23 Si 0.734 3.266 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.221 1.221 27 C -0.078 4.078 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.162 0.838 43 H 0.059 0.941 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.400 2.033 -5.180 5.579 hybrid contribution -0.981 -0.187 0.527 1.129 sum -1.381 1.845 -4.653 5.193 Atomic orbital electron populations 1.21957 0.78192 1.03602 1.02979 1.43302 1.05888 1.05962 1.57529 1.21458 0.90676 0.90613 1.12298 1.21838 0.95516 0.93037 1.06524 1.20092 0.92205 0.93421 1.14470 1.17443 0.81978 0.83802 0.78065 1.90647 1.82581 1.28068 1.45404 1.47762 1.15489 1.20440 1.46539 1.20402 0.88654 0.92372 0.97784 1.21950 1.00797 0.98269 0.97407 1.21014 0.88223 0.92272 0.93846 0.92908 1.22466 0.97420 0.96385 1.00074 1.22234 0.98694 0.96209 0.99741 1.21033 0.87921 0.92235 0.93964 0.87884 1.23881 1.05705 0.81870 0.91673 1.44801 1.06923 1.04341 1.73847 1.18983 0.84999 0.95317 1.33919 0.90991 1.24466 0.97187 0.95805 1.01915 1.69663 1.32929 1.00401 1.52835 0.86166 0.85668 0.76991 0.77737 1.21079 1.22261 1.22145 1.21377 0.89888 0.91033 1.05518 0.91347 0.90229 0.90304 0.82641 0.84199 0.92265 0.92048 0.92630 0.93318 0.92410 0.92700 0.92770 0.92655 0.96005 0.83828 0.94062 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 11.04 59.85 0.66 1.57 16 2 N -0.45 -7.62 3.09 -124.53 -0.38 -8.00 16 3 C -0.02 -0.41 11.34 -16.83 -0.19 -0.60 16 4 C -0.14 -2.77 8.57 -37.50 -0.32 -3.09 16 5 C -0.19 -4.16 5.53 -103.35 -0.57 -4.73 16 6 C 0.60 14.08 7.60 -12.52 -0.10 13.99 16 7 O -0.58 -14.95 16.58 5.25 0.09 -14.86 16 8 N -0.57 -12.57 2.52 -174.81 -0.44 -13.01 16 9 C 0.13 2.63 5.04 -5.76 -0.03 2.60 16 10 C -0.14 -2.83 5.03 -28.42 -0.14 -2.97 16 11 C 0.15 3.15 3.80 -67.16 -0.26 2.89 16 12 H 0.05 1.09 8.20 -51.53 -0.42 0.67 16 13 C -0.12 -2.15 5.99 -25.65 -0.15 -2.30 16 14 C -0.13 -2.35 5.74 -26.69 -0.15 -2.51 16 15 C 0.16 3.42 2.29 -67.77 -0.16 3.26 16 16 H 0.10 2.58 6.22 -51.72 -0.32 2.26 16 17 C 0.09 1.95 4.76 -2.52 -0.01 1.94 16 18 N -0.58 -13.76 2.33 -156.16 -0.36 -14.12 16 19 C -0.20 -5.42 10.37 -14.95 -0.16 -5.58 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 0.05 5.49 -17.43 -0.10 -0.05 16 22 N -0.91 -23.34 8.28 55.49 0.46 -22.88 16 23 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.06 1.10 11.28 -16.84 -0.19 0.91 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 32 H 0.14 2.54 6.93 -52.49 -0.36 2.18 16 33 H 0.06 1.06 5.73 -51.97 -0.30 0.76 16 34 H 0.06 1.24 7.27 -51.74 -0.38 0.87 16 35 H 0.05 1.26 8.15 -51.84 -0.42 0.84 16 36 H 0.05 0.82 8.14 -51.74 -0.42 0.39 16 37 H 0.06 0.87 7.65 -51.75 -0.40 0.47 16 38 H 0.05 0.90 8.17 -51.73 -0.42 0.48 16 39 H 0.05 0.90 6.60 -51.88 -0.34 0.56 16 40 H 0.05 0.94 8.17 -51.76 -0.42 0.52 16 41 H 0.02 0.43 7.82 -51.87 -0.41 0.02 16 42 H 0.14 3.25 2.29 -51.91 -0.12 3.13 16 43 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 44 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -30.83 335.54 -8.86 -39.69 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.39 Total: 6.22 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.86 Total: 5.32 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.73 Total: -58.01 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.83 -8.86 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045754276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.120 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds