Wall clock time and date at job start Tue Mar 31 2020 08:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 119.99951 * 2 1 4 4 N 1.46502 * 109.46746 * 124.82435 * 3 2 1 5 5 C 1.35536 * 125.67598 * 265.86687 * 4 3 2 6 6 C 1.35451 * 108.87143 * 180.02562 * 5 4 3 7 7 C 1.39840 * 107.86268 * 359.74541 * 6 5 4 8 8 C 1.37643 * 125.68034 * 85.89853 * 4 3 2 9 9 C 1.46683 * 126.23344 * 359.97248 * 8 4 3 10 10 O 1.21692 * 119.99620 * 4.09238 * 9 8 4 11 11 N 1.34774 * 120.00398 * 184.08601 * 9 8 4 12 12 C 1.46503 * 119.99789 * 4.18448 * 11 9 8 13 13 C 1.46497 * 120.00379 * 184.17899 * 11 9 8 14 14 C 1.53000 * 109.46885 * 276.16015 * 13 11 9 15 15 H 1.08998 * 112.96627 * 49.35841 * 14 13 11 16 16 C 1.53955 * 113.76625 * 181.03175 * 14 13 11 17 17 C 1.53949 * 86.28821 * 137.91114 * 16 14 13 18 18 N 1.47577 * 113.76992 * 277.67422 * 14 13 11 19 19 C 1.36932 * 134.49479 * 41.07212 * 18 14 13 20 20 H 1.08007 * 119.99497 * 6.56280 * 19 18 14 21 21 C 1.38811 * 120.00249 * 186.56625 * 19 18 14 22 22 N 1.31614 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46871 * 59.99874 * 23 21 19 25 25 H 1.48498 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47015 * 300.00002 * 23 21 19 27 27 H 1.08010 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.00181 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47062 * 4.82388 * 3 2 1 31 31 H 1.09001 * 109.47263 * 244.82534 * 3 2 1 32 32 H 1.07996 * 125.56682 * 359.97438 * 5 4 3 33 33 H 1.07996 * 126.06899 * 180.02562 * 6 5 4 34 34 H 1.08002 * 126.45843 * 180.30077 * 7 6 5 35 35 H 1.09001 * 109.47425 * 174.29897 * 12 11 9 36 36 H 1.09006 * 109.47119 * 294.29724 * 12 11 9 37 37 H 1.09000 * 109.47298 * 54.29403 * 12 11 9 38 38 H 1.09003 * 109.47144 * 156.15948 * 13 11 9 39 39 H 1.09004 * 109.46870 * 36.15750 * 13 11 9 40 40 H 1.09004 * 113.73900 * 252.25384 * 16 14 13 41 41 H 1.08993 * 113.73983 * 23.45797 * 16 14 13 42 42 H 1.08995 * 113.77287 * 90.69297 * 17 16 14 43 43 H 1.09001 * 113.76581 * 221.98605 * 17 16 14 44 44 H 0.97006 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9907 1.3336 1.1339 5 6 2.7346 1.8720 2.3511 6 6 3.8245 1.7116 3.1392 7 6 4.7994 1.0430 2.3921 8 6 4.2671 0.8185 1.1403 9 6 4.9369 0.1474 0.0211 10 8 4.3846 0.0704 -1.0606 11 7 6.1638 -0.3839 0.1906 12 6 6.7903 -0.3725 1.5148 13 6 6.8710 -0.9728 -0.9492 14 6 6.4059 -2.4169 -1.1470 15 1 5.3205 -2.5163 -1.1591 16 6 7.1083 -3.1412 -2.3099 17 6 7.1888 -4.3586 -1.3710 18 7 7.0821 -3.3860 -0.2630 19 6 7.4591 -3.3835 1.0534 20 1 7.1673 -2.5668 1.6971 21 6 8.2162 -4.4307 1.5606 22 7 8.5713 -5.4261 0.7762 23 14 8.7310 -4.4269 3.3563 24 1 7.5217 -4.4084 4.2178 25 1 9.5259 -5.6474 3.6459 26 1 9.5542 -3.2223 3.6327 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3583 2.1317 0.0864 31 1 2.6237 1.4012 -0.9300 32 1 1.8124 2.3514 2.6444 33 1 3.9216 2.0378 4.1641 34 1 5.7844 0.7579 2.7312 35 1 7.7261 -0.9303 1.4789 36 1 6.9920 0.6566 1.8126 37 1 6.1191 -0.8351 2.2384 38 1 7.9439 -0.9597 -0.7574 39 1 6.6555 -0.3953 -1.8483 40 1 6.4692 -3.2987 -3.1788 41 1 8.0793 -2.7186 -2.5675 42 1 6.3335 -5.0300 -1.4477 43 1 8.1446 -4.8812 -1.4102 44 1 9.1000 -6.1581 1.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:35 Heat of formation + Delta-G solvation = 121.118362 kcal Electronic energy + Delta-G solvation = -25526.096924 eV Core-core repulsion = 22062.259660 eV Total energy + Delta-G solvation = -3463.837264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38800 -39.10575 -37.54693 -35.64877 -34.74933 -32.22468 -31.36479 -29.98605 -28.13671 -27.43237 -26.59897 -25.80911 -23.28181 -22.95701 -21.18512 -20.49414 -20.28463 -19.11055 -18.80480 -17.15930 -16.67655 -16.00080 -15.67483 -15.37863 -15.07805 -14.82475 -14.36311 -13.98324 -13.94619 -13.55687 -13.25202 -13.06201 -12.80962 -12.73230 -12.60132 -12.49641 -11.93326 -11.54736 -11.40152 -11.30881 -11.07064 -10.92916 -10.87891 -10.67008 -10.47908 -9.98708 -9.77110 -9.65285 -9.43291 -9.31874 -8.71572 -8.68542 -8.25536 -8.02470 -6.78589 -5.70806 -3.03609 1.63742 1.92337 2.84533 2.86690 3.38272 3.43031 3.45220 3.56575 3.66934 4.46746 4.59405 4.70653 4.80004 5.02295 5.14842 5.20758 5.38424 5.45194 5.47912 5.55611 5.61492 5.71494 5.74962 5.75628 5.93330 6.01367 6.12389 6.15581 6.20418 6.28371 6.33169 6.39382 6.45853 6.52100 6.65768 6.77727 6.86697 7.04285 7.08440 7.29102 7.33236 7.52066 7.65651 7.77949 8.05322 8.50138 9.08631 9.76978 10.70159 11.45372 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004716 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.501241 B = 5935.703449 C = 6810.789095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.128 3.872 4 N -0.408 5.408 5 C 0.009 3.991 6 C -0.211 4.211 7 C -0.162 4.162 8 C -0.040 4.040 9 C 0.582 3.418 10 O -0.558 6.558 11 N -0.584 5.584 12 C 0.065 3.935 13 C 0.123 3.877 14 C 0.130 3.870 15 H 0.047 0.953 16 C -0.158 4.158 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.086 0.914 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.079 0.921 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 14.713 0.078 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.177 4.177 3 C 0.007 3.993 4 N -0.081 5.081 5 C -0.126 4.126 6 C -0.236 4.236 7 C -0.187 4.187 8 C -0.153 4.153 9 C 0.371 3.629 10 O -0.439 6.439 11 N -0.314 5.314 12 C -0.077 4.077 13 C 0.000 4.000 14 C 0.022 3.978 15 H 0.064 0.936 16 C -0.197 4.197 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.104 0.896 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.210 1.210 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.097 0.903 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.514 14.505 -0.523 17.922 hybrid contribution 0.029 -0.289 1.266 1.299 sum -10.485 14.216 0.743 17.680 Atomic orbital electron populations 1.23851 0.95458 1.02131 1.00367 1.23143 0.95998 0.98692 0.99821 1.21129 0.91910 0.96383 0.89844 1.43925 1.10801 1.42459 1.10912 1.21932 1.00994 1.04636 0.85009 1.20864 0.94423 1.07943 1.00324 1.22445 1.01439 1.02629 0.92227 1.20152 0.87429 1.10484 0.97283 1.16982 0.81232 0.78386 0.86293 1.90734 1.64710 1.61179 1.27275 1.47373 1.16305 1.56986 1.10765 1.22630 1.00457 1.00859 0.83802 1.21979 0.96364 0.94265 0.87402 1.22596 0.95776 0.89479 0.89926 0.93587 1.23744 0.99753 1.00117 0.96048 1.22315 1.00088 0.91154 0.83739 1.46137 1.66433 1.13261 1.07047 1.19230 1.25754 1.05842 0.84348 0.89633 1.24786 1.00680 0.97295 0.97741 1.69806 1.41800 1.10881 1.34155 0.86353 0.78309 0.77096 0.84982 1.21285 1.21640 1.20973 0.87871 0.88484 0.86565 0.89291 0.86604 0.81983 0.84293 0.81712 0.88383 0.92250 0.91133 0.89575 0.90893 0.93125 0.90720 0.96232 0.90298 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 14.32 29.02 0.42 -1.34 16 2 C -0.16 -1.96 9.85 -36.02 -0.35 -2.31 16 3 C 0.13 1.53 5.92 -5.19 -0.03 1.50 16 4 N -0.41 -5.61 2.74 -114.16 -0.31 -5.92 16 5 C 0.01 0.10 11.37 -16.91 -0.19 -0.09 16 6 C -0.21 -2.60 10.81 -39.98 -0.43 -3.03 16 7 C -0.16 -2.29 8.80 -39.12 -0.34 -2.64 16 8 C -0.04 -0.64 6.81 -81.98 -0.56 -1.20 16 9 C 0.58 10.51 7.59 -12.85 -0.10 10.41 16 10 O -0.56 -10.99 14.46 5.20 0.08 -10.92 16 11 N -0.58 -10.35 2.89 -183.12 -0.53 -10.88 16 12 C 0.06 1.03 6.84 59.85 0.41 1.44 16 13 C 0.12 2.26 5.16 -4.04 -0.02 2.24 16 14 C 0.13 2.75 4.49 -66.86 -0.30 2.45 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.16 -3.08 7.86 -25.79 -0.20 -3.29 16 17 C 0.15 3.65 7.69 -2.84 -0.02 3.62 16 18 N -0.60 -15.07 3.58 -169.69 -0.61 -15.68 16 19 C -0.22 -5.93 9.86 -15.06 -0.15 -6.08 16 20 H 0.09 2.10 4.28 -52.48 -0.22 1.87 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.93 11.30 55.49 0.63 -26.30 16 23 Si 0.90 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.10 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 29 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.09 0.78 7.78 -51.93 -0.40 0.38 16 31 H 0.12 1.58 6.47 -51.93 -0.34 1.25 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.17 2.12 4.08 -52.49 -0.21 1.91 16 35 H 0.10 1.70 5.99 -51.93 -0.31 1.39 16 36 H 0.06 0.76 6.31 -51.93 -0.33 0.44 16 37 H 0.07 1.15 6.39 -51.93 -0.33 0.81 16 38 H 0.09 1.57 7.84 -51.93 -0.41 1.16 16 39 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 2.06 6.90 -51.93 -0.36 1.70 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -32.18 353.36 -8.66 -40.84 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.24 Total: 5.73 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.98 Total: 1.35 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.82 Total: -58.78 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.18 -8.66 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.958 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds