Wall clock time and date at job start Tue Mar 31 2020 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 119.99951 * 2 1 4 4 N 1.46502 * 109.46746 * 124.82435 * 3 2 1 5 5 C 1.35536 * 125.67598 * 265.86687 * 4 3 2 6 6 C 1.35451 * 108.87143 * 180.02562 * 5 4 3 7 7 C 1.39840 * 107.86268 * 359.74541 * 6 5 4 8 8 C 1.37643 * 125.68034 * 85.89853 * 4 3 2 9 9 C 1.46683 * 126.23344 * 359.97248 * 8 4 3 10 10 O 1.21692 * 119.99620 * 4.09238 * 9 8 4 11 11 N 1.34774 * 120.00398 * 184.08601 * 9 8 4 12 12 C 1.46503 * 119.99789 * 4.18448 * 11 9 8 13 13 C 1.46497 * 120.00379 * 184.17899 * 11 9 8 14 14 C 1.53000 * 109.46885 * 276.16015 * 13 11 9 15 15 H 1.08998 * 112.96627 * 49.35841 * 14 13 11 16 16 C 1.53955 * 113.76625 * 181.03175 * 14 13 11 17 17 C 1.53949 * 86.28821 * 137.91114 * 16 14 13 18 18 N 1.47577 * 113.76992 * 277.67422 * 14 13 11 19 19 C 1.36932 * 134.49479 * 41.07212 * 18 14 13 20 20 H 1.08007 * 119.99497 * 6.56280 * 19 18 14 21 21 C 1.38811 * 120.00249 * 186.56625 * 19 18 14 22 22 N 1.31614 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46871 * 59.99874 * 23 21 19 25 25 H 1.48498 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47015 * 300.00002 * 23 21 19 27 27 H 1.08010 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00340 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.00181 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47062 * 4.82388 * 3 2 1 31 31 H 1.09001 * 109.47263 * 244.82534 * 3 2 1 32 32 H 1.07996 * 125.56682 * 359.97438 * 5 4 3 33 33 H 1.07996 * 126.06899 * 180.02562 * 6 5 4 34 34 H 1.08002 * 126.45843 * 180.30077 * 7 6 5 35 35 H 1.09001 * 109.47425 * 174.29897 * 12 11 9 36 36 H 1.09006 * 109.47119 * 294.29724 * 12 11 9 37 37 H 1.09000 * 109.47298 * 54.29403 * 12 11 9 38 38 H 1.09003 * 109.47144 * 156.15948 * 13 11 9 39 39 H 1.09004 * 109.46870 * 36.15750 * 13 11 9 40 40 H 1.09004 * 113.73900 * 252.25384 * 16 14 13 41 41 H 1.08993 * 113.73983 * 23.45797 * 16 14 13 42 42 H 1.08995 * 113.77287 * 90.69297 * 17 16 14 43 43 H 1.09001 * 113.76581 * 221.98605 * 17 16 14 44 44 H 0.97006 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9907 1.3336 1.1339 5 6 2.7346 1.8720 2.3511 6 6 3.8245 1.7116 3.1392 7 6 4.7994 1.0430 2.3921 8 6 4.2671 0.8185 1.1403 9 6 4.9369 0.1474 0.0211 10 8 4.3846 0.0704 -1.0606 11 7 6.1638 -0.3839 0.1906 12 6 6.7903 -0.3725 1.5148 13 6 6.8710 -0.9728 -0.9492 14 6 6.4059 -2.4169 -1.1470 15 1 5.3205 -2.5163 -1.1591 16 6 7.1083 -3.1412 -2.3099 17 6 7.1888 -4.3586 -1.3710 18 7 7.0821 -3.3860 -0.2630 19 6 7.4591 -3.3835 1.0534 20 1 7.1673 -2.5668 1.6971 21 6 8.2162 -4.4307 1.5606 22 7 8.5713 -5.4261 0.7762 23 14 8.7310 -4.4269 3.3563 24 1 7.5217 -4.4084 4.2178 25 1 9.5259 -5.6474 3.6459 26 1 9.5542 -3.2223 3.6327 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3583 2.1317 0.0864 31 1 2.6237 1.4012 -0.9300 32 1 1.8124 2.3514 2.6444 33 1 3.9216 2.0378 4.1641 34 1 5.7844 0.7579 2.7312 35 1 7.7261 -0.9303 1.4789 36 1 6.9920 0.6566 1.8126 37 1 6.1191 -0.8351 2.2384 38 1 7.9439 -0.9597 -0.7574 39 1 6.6555 -0.3953 -1.8483 40 1 6.4692 -3.2987 -3.1788 41 1 8.0793 -2.7186 -2.5675 42 1 6.3335 -5.0300 -1.4477 43 1 8.1446 -4.8812 -1.4102 44 1 9.1000 -6.1581 1.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:34 Heat of formation + Delta-G solvation = 102.492854 kcal Electronic energy + Delta-G solvation = -25526.904587 eV Core-core repulsion = 22062.259660 eV Total energy + Delta-G solvation = -3464.644926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.43260 -40.53222 -39.22802 -36.82490 -35.87584 -34.24905 -32.34929 -31.24450 -29.93984 -28.91367 -27.89328 -26.80105 -25.23972 -24.51763 -22.40832 -21.60715 -21.18276 -20.86139 -20.01283 -18.78191 -18.08589 -17.40569 -16.91269 -16.74040 -16.53964 -16.24126 -15.73893 -15.47262 -15.14425 -14.96125 -14.68809 -14.53612 -14.04553 -13.84906 -13.73581 -13.57375 -13.35842 -13.07342 -12.88507 -12.86175 -12.66164 -12.47131 -12.38748 -12.25076 -12.07852 -11.70152 -11.48718 -11.21557 -10.92789 -10.74604 -10.52172 -9.74113 -9.58015 -9.11825 -8.81619 -7.80122 -5.14470 0.51976 1.05332 1.48027 1.51462 1.56363 1.76384 1.88957 2.38524 2.44151 2.52281 3.35889 3.43507 3.61383 3.75301 3.86992 3.97417 4.20118 4.24833 4.27063 4.30379 4.37967 4.47742 4.53495 4.56783 4.58868 4.65394 4.70334 4.89016 4.89962 4.93089 4.99071 5.05105 5.18826 5.29832 5.37183 5.49588 5.50936 5.62505 5.64515 5.74252 5.90614 6.01374 6.04537 6.37379 6.45386 6.98991 7.15683 7.71037 8.67888 9.36396 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004716 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.501241 B = 5935.703449 C = 6810.789095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.191 4.191 3 C 0.131 3.869 4 N -0.413 5.413 5 C 0.026 3.974 6 C -0.223 4.223 7 C -0.161 4.161 8 C -0.084 4.084 9 C 0.575 3.425 10 O -0.585 6.585 11 N -0.592 5.592 12 C 0.069 3.931 13 C 0.132 3.868 14 C 0.133 3.867 15 H 0.023 0.977 16 C -0.131 4.131 17 C 0.143 3.857 18 N -0.623 5.623 19 C -0.224 4.224 20 H 0.102 0.898 21 C -0.072 4.072 22 N -0.957 5.957 23 Si 0.965 3.035 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.263 1.263 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.204 0.796 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.005 0.995 43 H 0.053 0.947 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 17.644 1.477 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.011 3.989 4 N -0.086 5.086 5 C -0.110 4.110 6 C -0.246 4.246 7 C -0.187 4.187 8 C -0.196 4.196 9 C 0.367 3.633 10 O -0.469 6.469 11 N -0.322 5.322 12 C -0.072 4.072 13 C 0.009 3.991 14 C 0.026 3.974 15 H 0.041 0.959 16 C -0.169 4.169 17 C 0.018 3.982 18 N -0.349 5.349 19 C -0.352 4.352 20 H 0.120 0.880 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.794 3.206 24 H -0.209 1.209 25 H -0.229 1.229 26 H -0.189 1.189 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.220 0.780 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.148 17.473 0.874 21.299 hybrid contribution 0.361 -1.172 0.830 1.481 sum -11.787 16.300 1.704 20.188 Atomic orbital electron populations 1.24120 0.94319 1.03909 0.96163 1.22912 0.96913 0.97387 1.03817 1.21173 0.91875 0.97377 0.88492 1.44165 1.10287 1.42168 1.12030 1.22669 1.02105 1.02488 0.83707 1.21236 0.94018 1.07812 1.01536 1.22672 1.02193 1.02050 0.91794 1.20015 0.89148 1.13133 0.97353 1.17386 0.81085 0.78115 0.86759 1.90703 1.65288 1.62361 1.28511 1.47450 1.16589 1.57036 1.11111 1.22647 0.99129 1.02592 0.82876 1.21765 0.96397 0.92418 0.88531 1.22604 0.94301 0.90885 0.89643 0.95918 1.23545 1.00847 0.96751 0.95788 1.22272 0.98099 0.92306 0.85557 1.46519 1.66610 1.14646 1.07137 1.19771 1.24307 1.05727 0.85351 0.88025 1.25608 1.01666 0.97374 1.01754 1.70022 1.43230 1.11605 1.35788 0.85338 0.77901 0.77126 0.80243 1.20919 1.22865 1.18868 0.87415 0.85176 0.90840 0.85314 0.89166 0.77964 0.81721 0.81067 0.89947 0.88987 0.91787 0.89265 0.89770 0.90444 0.89076 0.97716 0.92879 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 14.32 67.79 0.97 -1.52 16 2 C -0.19 -4.65 9.85 25.65 0.25 -4.40 16 3 C 0.13 2.97 5.92 85.63 0.51 3.47 16 4 N -0.41 -10.69 2.74 -515.08 -1.41 -12.11 16 5 C 0.03 0.51 11.37 83.48 0.95 1.46 16 6 C -0.22 -4.77 10.81 22.01 0.24 -4.53 16 7 C -0.16 -4.29 8.80 22.57 0.20 -4.09 16 8 C -0.08 -2.64 6.81 40.35 0.27 -2.36 16 9 C 0.57 21.10 7.59 86.45 0.66 21.75 16 10 O -0.59 -23.84 14.46 -4.32 -0.06 -23.90 16 11 N -0.59 -21.02 2.89 -851.48 -2.46 -23.48 16 12 C 0.07 2.14 6.84 127.77 0.87 3.02 16 13 C 0.13 4.85 5.16 86.38 0.45 5.29 16 14 C 0.13 5.69 4.49 45.10 0.20 5.89 16 15 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 16 C -0.13 -5.08 7.86 31.25 0.25 -4.83 16 17 C 0.14 7.09 7.69 86.44 0.66 7.76 16 18 N -0.62 -31.87 3.58 -690.79 -2.47 -34.34 16 19 C -0.22 -12.00 9.86 84.03 0.83 -11.17 16 20 H 0.10 4.99 4.28 -2.91 -0.01 4.98 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.96 -57.99 11.30 21.65 0.24 -57.74 16 23 Si 0.97 44.68 29.55 68.60 2.03 46.70 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.13 1.37 7.84 -2.91 -0.02 1.34 16 29 H 0.07 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.13 1.79 7.78 -2.39 -0.02 1.77 16 31 H 0.09 2.50 6.47 -2.39 -0.02 2.48 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.17 4.11 4.08 -2.91 -0.01 4.09 16 35 H 0.08 2.80 5.99 -2.39 -0.01 2.79 16 36 H 0.09 2.22 6.31 -2.38 -0.02 2.20 16 37 H 0.06 2.05 6.39 -2.39 -0.02 2.03 16 38 H 0.09 3.21 7.84 -2.39 -0.02 3.19 16 39 H 0.08 2.89 7.68 -2.39 -0.02 2.87 16 40 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.09 3.26 8.10 -2.39 -0.02 3.24 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 2.90 6.90 -2.39 -0.02 2.88 16 44 H 0.24 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -73.29 353.36 4.64 -68.65 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.00 Total: 24.04 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.77 Total: 12.18 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -6.10 Total: -127.67 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.29 4.64 -68.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.148 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds