Wall clock time and date at job start Tue Mar 31 2020 08:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99851 * 2 1 4 4 N 1.46498 * 109.46744 * 123.99462 * 3 2 1 5 5 C 1.35540 * 125.68025 * 266.58958 * 4 3 2 6 6 C 1.35453 * 108.87085 * 180.26801 * 5 4 3 7 7 C 1.39839 * 107.86791 * 359.76694 * 6 5 4 8 8 C 1.37654 * 125.67595 * 86.46330 * 4 3 2 9 9 C 1.46677 * 126.23439 * 359.97438 * 8 4 3 10 10 O 1.21690 * 119.99914 * 11.24679 * 9 8 4 11 11 N 1.34779 * 119.99685 * 191.24292 * 9 8 4 12 12 C 1.46493 * 120.00258 * 0.20066 * 11 9 8 13 13 C 1.46504 * 119.99489 * 180.19627 * 11 9 8 14 14 C 1.52998 * 109.47053 * 261.14069 * 13 11 9 15 15 H 1.08994 * 112.96920 * 312.38213 * 14 13 11 16 16 C 1.53945 * 113.76745 * 180.70436 * 14 13 11 17 17 C 1.53942 * 86.29520 * 222.09261 * 16 14 13 18 18 N 1.47588 * 86.23590 * 23.55110 * 17 16 14 19 19 C 1.36936 * 134.49115 * 155.42786 * 18 17 16 20 20 H 1.08000 * 119.99941 * 176.22371 * 19 18 17 21 21 C 1.38813 * 120.00010 * 356.22130 * 19 18 17 22 22 N 1.31623 * 120.00292 * 358.22899 * 21 19 18 23 23 Si 1.86802 * 119.99959 * 178.23471 * 21 19 18 24 24 H 1.48491 * 109.47186 * 57.31838 * 23 21 19 25 25 H 1.48498 * 109.46918 * 177.32336 * 23 21 19 26 26 H 1.48507 * 109.46639 * 297.31706 * 23 21 19 27 27 H 1.08001 * 119.99494 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00147 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.47021 * 3.99888 * 3 2 1 31 31 H 1.08998 * 109.47371 * 243.99287 * 3 2 1 32 32 H 1.08000 * 125.55956 * 0.02562 * 5 4 3 33 33 H 1.07996 * 126.06405 * 179.74920 * 6 5 4 34 34 H 1.07992 * 126.45902 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47063 * 275.57459 * 12 11 9 36 36 H 1.09002 * 109.47383 * 35.57475 * 12 11 9 37 37 H 1.08998 * 109.47081 * 155.57238 * 12 11 9 38 38 H 1.08997 * 109.46740 * 141.14018 * 13 11 9 39 39 H 1.08997 * 109.46795 * 21.14151 * 13 11 9 40 40 H 1.09008 * 113.74136 * 107.74418 * 16 14 13 41 41 H 1.08997 * 113.84262 * 336.45333 * 16 14 13 42 42 H 1.08997 * 113.77346 * 137.90711 * 17 16 14 43 43 H 1.09004 * 113.76971 * 269.20150 * 17 16 14 44 44 H 0.96993 * 120.00463 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9765 1.3419 1.1452 5 6 2.7003 1.8768 2.3595 6 6 3.7840 1.7314 3.1591 7 6 4.7759 1.0765 2.4224 8 6 4.2567 0.8366 1.1678 9 6 4.9453 0.1696 0.0576 10 8 4.4673 0.2002 -1.0611 11 7 6.1073 -0.4771 0.2766 12 6 6.6805 -0.5175 1.6241 13 6 6.7972 -1.1396 -0.8331 14 6 6.4791 -2.6360 -0.8108 15 1 6.5908 -3.0798 0.1784 16 6 7.1711 -3.4341 -1.9306 17 6 5.8327 -4.1777 -2.0908 18 7 5.2095 -2.9868 -1.4813 19 6 3.9586 -2.4312 -1.5222 20 1 3.7338 -1.5621 -0.9218 21 6 2.9793 -2.9852 -2.3353 22 7 3.2630 -4.0232 -3.0933 23 14 1.2590 -2.2575 -2.3538 24 1 1.3328 -0.8218 -2.7257 25 1 0.4251 -2.9835 -3.3451 26 1 0.6515 -2.3889 -1.0051 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3574 2.1323 0.0717 31 1 2.6355 1.3946 -0.9236 32 1 1.7696 2.3463 2.6421 33 1 3.8672 2.0626 4.1836 34 1 5.7624 0.8087 2.7706 35 1 7.2617 0.3877 1.7991 36 1 5.8777 -0.5815 2.3587 37 1 7.3284 -1.3891 1.7173 38 1 7.8727 -0.9951 -0.7303 39 1 6.4616 -0.7108 -1.7773 40 1 7.9857 -4.0675 -1.5792 41 1 7.4447 -2.8316 -2.7967 42 1 5.5431 -4.3426 -3.1286 43 1 5.7535 -5.0765 -1.4792 44 1 2.5789 -4.4101 -3.6618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:37 Heat of formation + Delta-G solvation = 134.801099 kcal Electronic energy + Delta-G solvation = -26480.405279 eV Core-core repulsion = 23017.161343 eV Total energy + Delta-G solvation = -3463.243936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28324 -39.01086 -37.41166 -35.54625 -34.62161 -31.98385 -31.20411 -29.91267 -27.77637 -27.57470 -26.55392 -25.66001 -23.18814 -22.88427 -21.04331 -20.44318 -20.02796 -18.95219 -18.77352 -16.95948 -16.71618 -15.94029 -15.58200 -15.33508 -15.00986 -14.46227 -14.29426 -13.93975 -13.77156 -13.50948 -13.22996 -12.94152 -12.79631 -12.59569 -12.48141 -12.38613 -11.71215 -11.47326 -11.32368 -11.14089 -10.94599 -10.88350 -10.70453 -10.55963 -10.42066 -9.88097 -9.60936 -9.47209 -9.12700 -9.00319 -8.58367 -8.56349 -8.06929 -7.94324 -6.65922 -5.52483 -2.82856 1.82344 2.22764 2.93862 3.02274 3.44543 3.54832 3.57670 3.66966 3.85862 4.61142 4.85877 4.88717 5.03172 5.14590 5.24880 5.35908 5.42658 5.52475 5.55122 5.59268 5.65137 5.72248 5.78417 5.86559 5.89946 6.03600 6.06007 6.10385 6.18518 6.31985 6.40536 6.47383 6.73225 6.76919 6.81719 6.84261 6.91925 7.08879 7.20846 7.41640 7.42626 7.56863 7.81990 7.88873 8.24222 8.75680 9.32509 9.95945 10.81027 11.64373 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.008256 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.558457 B = 3390.583690 C = 5382.683436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.125 3.875 4 N -0.402 5.402 5 C 0.007 3.993 6 C -0.212 4.212 7 C -0.173 4.173 8 C -0.031 4.031 9 C 0.572 3.428 10 O -0.505 6.505 11 N -0.599 5.599 12 C 0.062 3.938 13 C 0.118 3.882 14 C 0.124 3.876 15 H 0.043 0.957 16 C -0.158 4.158 17 C 0.152 3.848 18 N -0.597 5.597 19 C -0.193 4.193 20 H 0.099 0.901 21 C -0.020 4.020 22 N -0.932 5.932 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.301 1.301 26 H -0.286 1.286 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 10.362 11.419 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.005 3.995 4 N -0.074 5.074 5 C -0.128 4.128 6 C -0.236 4.236 7 C -0.199 4.199 8 C -0.145 4.145 9 C 0.360 3.640 10 O -0.381 6.381 11 N -0.332 5.332 12 C -0.081 4.081 13 C -0.005 4.005 14 C 0.016 3.984 15 H 0.060 0.940 16 C -0.197 4.197 17 C 0.027 3.973 18 N -0.322 5.322 19 C -0.321 4.321 20 H 0.116 0.884 21 C -0.215 4.215 22 N -0.582 5.582 23 Si 0.732 3.268 24 H -0.206 1.206 25 H -0.228 1.228 26 H -0.214 1.214 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.179 0.821 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.459 10.408 10.356 15.084 hybrid contribution -1.140 0.097 0.152 1.154 sum 2.320 10.504 10.509 15.038 Atomic orbital electron populations 1.23916 0.95675 1.02042 1.00654 1.23329 0.96332 0.98958 0.99412 1.21215 0.92371 0.96458 0.89490 1.44005 1.10732 1.41900 1.10802 1.21921 1.00939 1.04917 0.85039 1.20783 0.94364 1.08350 1.00147 1.22117 1.01126 1.04200 0.92419 1.20279 0.87359 1.09728 0.97181 1.16936 0.80842 0.79151 0.87046 1.90883 1.64375 1.59102 1.23782 1.47286 1.22873 1.53522 1.09486 1.22440 0.99651 1.01317 0.84659 1.21939 0.94555 0.93654 0.90380 1.22695 0.88198 0.92427 0.95080 0.94019 1.23781 0.97831 0.99500 0.98602 1.22252 0.86159 0.89355 0.99539 1.46084 1.06588 1.25631 1.53909 1.19579 0.84965 1.07711 1.19830 0.88362 1.24720 0.98059 0.98687 0.99992 1.69808 1.32499 1.25383 1.30492 0.86533 0.85050 0.78606 0.76650 1.20617 1.22839 1.21359 0.87783 0.88503 0.85572 0.89268 0.86140 0.82090 0.84487 0.82199 0.92759 0.89366 0.91316 0.91543 0.88686 0.93220 0.90731 0.90458 0.96168 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 13.21 29.01 0.38 -2.58 16 2 C -0.16 -3.00 7.83 -36.02 -0.28 -3.28 16 3 C 0.12 2.04 6.03 -5.19 -0.03 2.01 16 4 N -0.40 -6.49 2.74 -114.15 -0.31 -6.81 16 5 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 6 C -0.21 -2.69 10.81 -39.98 -0.43 -3.12 16 7 C -0.17 -2.42 8.70 -39.11 -0.34 -2.76 16 8 C -0.03 -0.54 6.72 -81.98 -0.55 -1.09 16 9 C 0.57 11.30 6.57 -12.85 -0.08 11.21 16 10 O -0.51 -11.85 11.14 5.20 0.06 -11.79 16 11 N -0.60 -10.33 2.88 -183.14 -0.53 -10.86 16 12 C 0.06 0.77 8.72 59.84 0.52 1.30 16 13 C 0.12 2.12 5.37 -4.04 -0.02 2.10 16 14 C 0.12 2.52 4.51 -66.74 -0.30 2.22 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 16 C -0.16 -3.01 7.86 -25.80 -0.20 -3.22 16 17 C 0.15 3.71 7.63 -2.97 -0.02 3.69 16 18 N -0.60 -15.60 3.58 -169.76 -0.61 -16.20 16 19 C -0.19 -5.58 9.64 -15.06 -0.15 -5.72 16 20 H 0.10 2.79 3.33 -52.49 -0.17 2.61 16 21 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 22 N -0.93 -29.20 11.30 55.49 0.63 -28.57 16 23 Si 0.90 23.68 25.32 -169.99 -4.30 19.37 16 24 H -0.28 -7.29 7.09 56.52 0.40 -6.89 16 25 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 26 H -0.29 -7.08 5.52 56.52 0.31 -6.77 16 27 H 0.10 1.72 7.28 -52.49 -0.38 1.34 16 28 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 29 H 0.13 2.86 5.35 -52.49 -0.28 2.58 16 30 H 0.09 1.12 7.78 -51.93 -0.40 0.72 16 31 H 0.12 2.26 6.34 -51.93 -0.33 1.93 16 32 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.16 1.80 4.50 -52.49 -0.24 1.57 16 35 H 0.05 0.55 7.57 -51.93 -0.39 0.15 16 36 H 0.09 1.10 4.93 -51.93 -0.26 0.84 16 37 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 38 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 39 H 0.09 2.02 7.18 -51.93 -0.37 1.65 16 40 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 42 H 0.08 2.10 6.95 -51.93 -0.36 1.74 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -35.22 339.32 -7.95 -43.18 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.20 Total: 6.63 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.80 Total: -0.06 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.82 Total: -62.44 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.06 Total: -11.79 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.30 Total: 19.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.22 -7.95 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.976 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds