Wall clock time and date at job start Tue Mar 31 2020 08:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99851 * 2 1 4 4 N 1.46498 * 109.46744 * 123.99462 * 3 2 1 5 5 C 1.35540 * 125.68025 * 266.58958 * 4 3 2 6 6 C 1.35453 * 108.87085 * 180.26801 * 5 4 3 7 7 C 1.39839 * 107.86791 * 359.76694 * 6 5 4 8 8 C 1.37654 * 125.67595 * 86.46330 * 4 3 2 9 9 C 1.46677 * 126.23439 * 359.97438 * 8 4 3 10 10 O 1.21690 * 119.99914 * 11.24679 * 9 8 4 11 11 N 1.34779 * 119.99685 * 191.24292 * 9 8 4 12 12 C 1.46493 * 120.00258 * 0.20066 * 11 9 8 13 13 C 1.46504 * 119.99489 * 180.19627 * 11 9 8 14 14 C 1.52998 * 109.47053 * 261.14069 * 13 11 9 15 15 H 1.08994 * 112.96920 * 312.38213 * 14 13 11 16 16 C 1.53945 * 113.76745 * 180.70436 * 14 13 11 17 17 C 1.53942 * 86.29520 * 222.09261 * 16 14 13 18 18 N 1.47588 * 86.23590 * 23.55110 * 17 16 14 19 19 C 1.36936 * 134.49115 * 155.42786 * 18 17 16 20 20 H 1.08000 * 119.99941 * 176.22371 * 19 18 17 21 21 C 1.38813 * 120.00010 * 356.22130 * 19 18 17 22 22 N 1.31623 * 120.00292 * 358.22899 * 21 19 18 23 23 Si 1.86802 * 119.99959 * 178.23471 * 21 19 18 24 24 H 1.48491 * 109.47186 * 57.31838 * 23 21 19 25 25 H 1.48498 * 109.46918 * 177.32336 * 23 21 19 26 26 H 1.48507 * 109.46639 * 297.31706 * 23 21 19 27 27 H 1.08001 * 119.99494 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00147 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.47021 * 3.99888 * 3 2 1 31 31 H 1.08998 * 109.47371 * 243.99287 * 3 2 1 32 32 H 1.08000 * 125.55956 * 0.02562 * 5 4 3 33 33 H 1.07996 * 126.06405 * 179.74920 * 6 5 4 34 34 H 1.07992 * 126.45902 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47063 * 275.57459 * 12 11 9 36 36 H 1.09002 * 109.47383 * 35.57475 * 12 11 9 37 37 H 1.08998 * 109.47081 * 155.57238 * 12 11 9 38 38 H 1.08997 * 109.46740 * 141.14018 * 13 11 9 39 39 H 1.08997 * 109.46795 * 21.14151 * 13 11 9 40 40 H 1.09008 * 113.74136 * 107.74418 * 16 14 13 41 41 H 1.08997 * 113.84262 * 336.45333 * 16 14 13 42 42 H 1.08997 * 113.77346 * 137.90711 * 17 16 14 43 43 H 1.09004 * 113.76971 * 269.20150 * 17 16 14 44 44 H 0.96993 * 120.00463 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9765 1.3419 1.1452 5 6 2.7003 1.8768 2.3595 6 6 3.7840 1.7314 3.1591 7 6 4.7759 1.0765 2.4224 8 6 4.2567 0.8366 1.1678 9 6 4.9453 0.1696 0.0576 10 8 4.4673 0.2002 -1.0611 11 7 6.1073 -0.4771 0.2766 12 6 6.6805 -0.5175 1.6241 13 6 6.7972 -1.1396 -0.8331 14 6 6.4791 -2.6360 -0.8108 15 1 6.5908 -3.0798 0.1784 16 6 7.1711 -3.4341 -1.9306 17 6 5.8327 -4.1777 -2.0908 18 7 5.2095 -2.9868 -1.4813 19 6 3.9586 -2.4312 -1.5222 20 1 3.7338 -1.5621 -0.9218 21 6 2.9793 -2.9852 -2.3353 22 7 3.2630 -4.0232 -3.0933 23 14 1.2590 -2.2575 -2.3538 24 1 1.3328 -0.8218 -2.7257 25 1 0.4251 -2.9835 -3.3451 26 1 0.6515 -2.3889 -1.0051 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3574 2.1323 0.0717 31 1 2.6355 1.3946 -0.9236 32 1 1.7696 2.3463 2.6421 33 1 3.8672 2.0626 4.1836 34 1 5.7624 0.8087 2.7706 35 1 7.2617 0.3877 1.7991 36 1 5.8777 -0.5815 2.3587 37 1 7.3284 -1.3891 1.7173 38 1 7.8727 -0.9951 -0.7303 39 1 6.4616 -0.7108 -1.7773 40 1 7.9857 -4.0675 -1.5792 41 1 7.4447 -2.8316 -2.7967 42 1 5.5431 -4.3426 -3.1286 43 1 5.7535 -5.0765 -1.4792 44 1 2.5789 -4.4101 -3.6618 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:36 Heat of formation + Delta-G solvation = 110.795754 kcal Electronic energy + Delta-G solvation = -26481.446229 eV Core-core repulsion = 23017.161343 eV Total energy + Delta-G solvation = -3464.284886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41146 -40.47025 -39.10677 -36.86544 -35.95755 -34.13022 -32.40621 -31.18008 -29.77164 -28.90227 -27.81838 -26.82729 -25.23416 -24.43868 -22.31628 -21.61915 -21.26711 -20.79252 -20.01790 -18.72673 -18.15666 -17.43756 -17.05395 -16.66907 -16.46030 -16.17638 -15.76044 -15.49251 -15.12794 -15.04146 -14.72451 -14.35183 -14.05474 -13.86905 -13.67261 -13.55047 -13.34195 -13.07788 -12.94170 -12.70813 -12.69574 -12.46011 -12.36623 -12.23750 -11.91703 -11.71041 -11.45338 -11.19564 -10.83768 -10.68540 -10.47557 -9.67794 -9.47790 -9.05627 -8.75044 -7.78507 -5.07445 0.63064 0.94560 1.28397 1.37979 1.43905 1.80585 1.95320 2.42712 2.51153 2.55740 3.37136 3.45216 3.69110 3.74343 3.79107 3.98493 4.20365 4.24277 4.29955 4.37807 4.41068 4.47177 4.50983 4.56673 4.61926 4.70038 4.78059 4.80467 4.94421 4.96718 5.07135 5.14742 5.21095 5.31315 5.38479 5.44233 5.55100 5.67056 5.75180 5.81294 5.97201 6.07089 6.09780 6.39207 6.56501 7.08262 7.38999 7.76347 8.67366 9.37991 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.008256 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.558457 B = 3390.583690 C = 5382.683436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.191 4.191 3 C 0.133 3.867 4 N -0.416 5.416 5 C 0.014 3.986 6 C -0.215 4.215 7 C -0.154 4.154 8 C -0.083 4.083 9 C 0.561 3.439 10 O -0.562 6.562 11 N -0.602 5.602 12 C 0.056 3.944 13 C 0.125 3.875 14 C 0.126 3.874 15 H 0.059 0.941 16 C -0.126 4.126 17 C 0.139 3.861 18 N -0.629 5.629 19 C -0.176 4.176 20 H 0.103 0.897 21 C -0.093 4.093 22 N -0.967 5.967 23 Si 0.952 3.048 24 H -0.282 1.282 25 H -0.314 1.314 26 H -0.268 1.268 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.197 0.803 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.015 0.985 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 12.599 15.038 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.012 3.988 4 N -0.089 5.089 5 C -0.120 4.120 6 C -0.239 4.239 7 C -0.180 4.180 8 C -0.195 4.195 9 C 0.351 3.649 10 O -0.443 6.443 11 N -0.333 5.333 12 C -0.085 4.085 13 C 0.001 3.999 14 C 0.020 3.980 15 H 0.076 0.924 16 C -0.165 4.165 17 C 0.014 3.986 18 N -0.355 5.355 19 C -0.305 4.305 20 H 0.120 0.880 21 C -0.283 4.283 22 N -0.621 5.621 23 Si 0.784 3.216 24 H -0.208 1.208 25 H -0.243 1.243 26 H -0.195 1.195 27 H 0.113 0.887 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.103 0.897 32 H 0.214 0.786 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.625 12.657 14.056 19.472 hybrid contribution -1.399 -0.547 -0.815 1.709 sum 3.226 12.110 13.241 18.232 Atomic orbital electron populations 1.24181 0.94763 1.03704 0.97487 1.23139 0.97163 0.98122 1.02511 1.21063 0.92451 0.96572 0.88667 1.44130 1.10517 1.42607 1.11618 1.22667 1.02448 1.03169 0.83724 1.21238 0.93510 1.07671 1.01459 1.22541 1.02341 1.02197 0.90904 1.20249 0.88713 1.12771 0.97816 1.17521 0.81242 0.78944 0.87164 1.90841 1.65884 1.61565 1.25983 1.47457 1.22327 1.52465 1.11101 1.22729 1.00047 1.03840 0.81874 1.21759 0.97126 0.91566 0.89428 1.22946 0.85055 0.94366 0.95675 0.92377 1.23511 0.96232 0.98507 0.98210 1.22256 0.89696 0.89504 0.97154 1.46531 1.07394 1.26491 1.55094 1.19970 0.86058 1.06828 1.17686 0.87997 1.25433 1.01520 1.00047 1.01278 1.70013 1.32659 1.27231 1.32185 0.85681 0.81693 0.77388 0.76866 1.20815 1.24258 1.19459 0.88719 0.84063 0.90622 0.85155 0.89687 0.78648 0.81131 0.79643 0.89620 0.89380 0.89342 0.86597 0.92723 0.88600 0.90446 0.94315 0.96701 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 13.21 67.77 0.90 -4.08 16 2 C -0.19 -7.09 7.83 25.64 0.20 -6.89 16 3 C 0.13 4.31 6.03 85.64 0.52 4.82 16 4 N -0.42 -12.88 2.74 -515.06 -1.41 -14.30 16 5 C 0.01 0.33 11.37 83.48 0.95 1.28 16 6 C -0.22 -4.53 10.81 22.01 0.24 -4.30 16 7 C -0.15 -3.82 8.70 22.57 0.20 -3.63 16 8 C -0.08 -2.79 6.72 40.35 0.27 -2.52 16 9 C 0.56 22.46 6.57 86.45 0.57 23.03 16 10 O -0.56 -27.84 11.14 -4.32 -0.05 -27.88 16 11 N -0.60 -19.99 2.88 -851.53 -2.45 -22.45 16 12 C 0.06 1.19 8.72 127.77 1.11 2.31 16 13 C 0.12 4.33 5.37 86.38 0.46 4.79 16 14 C 0.13 4.97 4.51 45.05 0.20 5.17 16 15 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 16 C -0.13 -4.60 7.86 31.25 0.25 -4.36 16 17 C 0.14 7.00 7.63 86.48 0.66 7.66 16 18 N -0.63 -33.88 3.58 -691.00 -2.48 -36.35 16 19 C -0.18 -10.68 9.64 84.03 0.81 -9.87 16 20 H 0.10 6.10 3.33 -2.91 -0.01 6.09 16 21 C -0.09 -5.93 5.50 84.86 0.47 -5.46 16 22 N -0.97 -64.46 11.30 21.65 0.24 -64.21 16 23 Si 0.95 51.90 25.32 68.60 1.74 53.64 16 24 H -0.28 -15.16 7.09 99.48 0.71 -14.46 16 25 H -0.31 -17.53 7.11 99.48 0.71 -16.82 16 26 H -0.27 -13.52 5.52 99.48 0.55 -12.97 16 27 H 0.09 3.02 7.28 -2.91 -0.02 3.00 16 28 H 0.14 2.99 7.84 -2.91 -0.02 2.96 16 29 H 0.08 3.59 5.35 -2.91 -0.02 3.58 16 30 H 0.13 2.95 7.78 -2.39 -0.02 2.94 16 31 H 0.08 3.36 6.34 -2.39 -0.02 3.35 16 32 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.19 3.40 4.50 -2.91 -0.01 3.38 16 35 H 0.09 1.32 7.57 -2.39 -0.02 1.30 16 36 H 0.09 1.89 4.93 -2.39 -0.01 1.88 16 37 H 0.09 1.54 8.03 -2.39 -0.02 1.52 16 38 H 0.12 2.87 8.13 -2.39 -0.02 2.85 16 39 H 0.05 2.37 7.18 -2.39 -0.02 2.36 16 40 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 42 H 0.04 2.23 6.95 -2.39 -0.02 2.21 16 43 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -86.32 339.32 4.24 -82.09 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.85 Total: 21.51 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.80 Total: 7.96 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -6.10 Total: -137.31 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.74 Total: 53.64 kcal Total: -86.32 4.24 -82.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.883 kcal (2) G-P(sol) polarization free energy of solvation -86.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds