Wall clock time and date at job start Tue Mar 31 2020 09:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38381 * 119.92528 * 2 1 4 4 C 1.38336 * 120.29386 * 179.97438 * 3 2 1 5 5 C 1.37987 * 120.13917 * 359.77829 * 4 3 2 6 6 C 1.50700 * 120.06939 * 180.23305 * 5 4 3 7 7 C 1.39549 * 119.85206 * 0.49791 * 5 4 3 8 8 C 1.47850 * 120.14057 * 179.76453 * 7 5 4 9 9 O 1.21552 * 120.00310 * 300.49513 * 8 7 5 10 10 N 1.34777 * 120.00080 * 120.50275 * 8 7 5 11 11 C 1.46502 * 120.00051 * 4.60178 * 10 8 7 12 12 C 1.50692 * 109.47551 * 265.93728 * 11 10 8 13 13 H 1.07999 * 120.00448 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99882 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00186 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47017 * 89.99644 * 16 14 12 18 18 H 1.48493 * 109.47289 * 209.99849 * 16 14 12 19 19 H 1.48505 * 109.46979 * 329.99974 * 16 14 12 20 20 C 1.46499 * 119.99952 * 184.61615 * 10 8 7 21 21 C 1.52996 * 109.46760 * 269.98997 * 20 10 8 22 22 C 1.53000 * 109.47400 * 179.97438 * 21 20 10 23 23 C 1.53000 * 109.46879 * 65.00129 * 22 21 20 24 24 C 1.53005 * 109.47312 * 185.00137 * 22 21 20 25 25 C 1.37933 * 119.92624 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47148 * 269.97798 * 1 2 3 27 27 H 1.09000 * 109.47085 * 29.97889 * 1 2 3 28 28 H 1.09001 * 109.46935 * 149.97953 * 1 2 3 29 29 H 1.08003 * 119.85253 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.93183 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47490 * 265.06327 * 6 5 4 32 32 H 1.08998 * 109.47277 * 25.06867 * 6 5 4 33 33 H 1.09002 * 109.46729 * 145.06316 * 6 5 4 34 34 H 1.09004 * 109.46957 * 25.93862 * 11 10 8 35 35 H 1.09001 * 109.46774 * 145.93221 * 11 10 8 36 36 H 0.96992 * 120.00112 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47226 * 149.99682 * 20 10 8 38 38 H 1.08998 * 109.47513 * 29.99436 * 20 10 8 39 39 H 1.08998 * 109.47466 * 300.00468 * 21 20 10 40 40 H 1.08999 * 109.47410 * 60.00163 * 21 20 10 41 41 H 1.09001 * 109.47257 * 305.00500 * 22 21 20 42 42 H 1.09004 * 109.47361 * 60.00095 * 23 22 21 43 43 H 1.08995 * 109.47528 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47423 * 300.00214 * 23 22 21 45 45 H 1.08996 * 109.46974 * 60.00354 * 24 22 21 46 46 H 1.09000 * 109.46793 * 180.02562 * 24 22 21 47 47 H 1.08995 * 109.46889 * 299.99756 * 24 22 21 48 48 H 1.07998 * 120.07674 * 0.02675 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0194 0.0057 6 6 5.7882 0.0309 0.0116 7 6 3.5911 -1.1935 -0.0002 8 6 4.3353 -2.4711 0.0001 9 8 5.1067 -2.7253 -0.9042 10 7 4.1582 -3.3539 1.0029 11 6 3.1555 -3.0943 2.0389 12 6 3.8099 -2.4103 3.2114 13 1 4.8672 -2.1913 3.1876 14 6 3.0589 -2.0641 4.3147 15 7 3.6302 -1.4677 5.3382 16 14 1.2304 -2.4435 4.3563 17 1 1.0177 -3.7909 4.9435 18 1 0.5326 -1.4271 5.1840 19 1 0.6872 -2.4145 2.9745 20 6 4.9687 -4.5731 1.0571 21 6 4.2597 -5.6913 0.2904 22 6 5.1063 -6.9645 0.3464 23 6 5.1921 -7.4566 1.7926 24 6 4.4602 -8.0453 -0.5227 25 6 2.1952 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6538 2.1325 -0.0004 30 1 4.1136 2.1476 0.0009 31 1 6.1562 -0.0568 -1.0106 32 1 6.1427 0.9654 0.4465 33 1 6.1556 -0.8076 0.6033 34 1 2.3729 -2.4524 1.6343 35 1 2.7185 -4.0377 2.3661 36 1 3.1020 -1.2244 6.1145 37 1 5.1035 -4.8739 2.0961 38 1 5.9420 -4.3829 0.6048 39 1 3.2864 -5.8815 0.7428 40 1 4.1248 -5.3906 -0.7485 41 1 6.1087 -6.7509 -0.0247 42 1 4.1897 -7.6702 2.1638 43 1 5.7948 -8.3639 1.8325 44 1 5.6524 -6.6867 2.4117 45 1 4.3991 -7.6947 -1.5529 46 1 5.0631 -8.9524 -0.4824 47 1 3.4579 -8.2589 -0.1514 48 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:56 Heat of formation + Delta-G solvation = -50.977829 kcal Electronic energy + Delta-G solvation = -25915.969882 eV Core-core repulsion = 22548.210311 eV Total energy + Delta-G solvation = -3367.759571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50468 -39.60495 -37.86597 -36.46414 -34.71949 -34.49453 -32.47848 -30.73999 -30.14346 -29.20289 -28.00355 -26.04636 -25.21145 -24.69209 -23.55678 -22.08828 -20.89214 -19.86792 -19.04695 -18.09836 -17.40973 -16.86859 -16.66576 -16.28751 -16.12135 -15.44100 -15.29480 -14.95682 -14.77199 -14.62981 -14.51684 -14.15003 -14.12934 -13.88242 -13.70845 -13.56154 -13.43721 -13.20134 -13.00274 -12.77974 -12.73010 -12.57501 -12.43428 -12.37847 -12.19140 -12.09836 -11.94710 -11.79992 -11.64838 -11.57968 -11.43107 -10.87222 -10.72990 -9.80634 -9.44523 -9.34555 -8.30289 -6.35848 0.18022 0.43417 1.35525 1.36593 1.46632 1.65128 2.20900 2.32742 2.81937 3.04217 3.55883 3.87207 3.88855 3.91964 3.96273 4.05283 4.07614 4.26003 4.28745 4.47203 4.52616 4.62231 4.64369 4.66736 4.67492 4.70995 4.76950 4.81445 4.82394 4.82597 4.87186 4.91562 5.02350 5.06360 5.08240 5.10519 5.12777 5.30183 5.32672 5.39026 5.44160 5.46418 5.49217 5.57253 5.62572 5.68256 6.06869 6.14522 6.54315 6.66376 7.15612 7.29675 8.86357 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.006130 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.033835 B = 4566.456251 C = 5780.287017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.103 4.103 4 C -0.123 4.123 5 C -0.070 4.070 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.560 3.440 9 O -0.583 6.583 10 N -0.588 5.588 11 C 0.208 3.792 12 C -0.532 4.532 13 H 0.025 0.975 14 C 0.022 3.978 15 N -0.941 5.941 16 Si 0.931 3.069 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.235 1.235 20 C 0.117 3.883 21 C -0.116 4.116 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 -2.443 -10.803 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.141 4.141 5 C -0.071 4.071 6 C -0.161 4.161 7 C -0.132 4.132 8 C 0.349 3.651 9 O -0.465 6.465 10 N -0.316 5.316 11 C 0.087 3.913 12 C -0.571 4.571 13 H 0.044 0.956 14 C -0.177 4.177 15 N -0.581 5.581 16 Si 0.754 3.246 17 H -0.188 1.188 18 H -0.207 1.207 19 H -0.158 1.158 20 C -0.006 4.006 21 C -0.154 4.154 22 C -0.110 4.110 23 C -0.206 4.206 24 C -0.197 4.197 25 C -0.118 4.118 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.313 -2.543 -11.066 12.536 hybrid contribution -0.074 -0.075 0.833 0.840 sum -5.387 -2.618 -10.233 11.857 Atomic orbital electron populations 1.20832 0.88664 1.04220 1.02882 1.20172 0.97894 0.92386 0.99944 1.21499 0.93911 0.98515 0.98145 1.21243 0.94887 0.97225 1.00707 1.20050 0.96608 0.92389 0.98039 1.20699 0.90983 1.02221 1.02173 1.19778 0.94798 0.92966 1.05640 1.18619 0.81345 0.83806 0.81343 1.90647 1.39775 1.78728 1.37354 1.47970 1.38314 1.20670 1.24647 1.19893 0.88396 0.97041 0.85986 1.21399 0.95645 1.39067 1.00965 0.95628 1.25714 1.03450 0.94012 0.94491 1.70048 1.38481 1.42269 1.07310 0.85940 0.79539 0.78798 0.80350 1.18796 1.20707 1.15838 1.21541 0.94093 0.83778 1.01153 1.21892 0.99495 0.94395 0.99641 1.21039 0.99082 0.94046 0.96826 1.21892 1.02156 1.01176 0.95342 1.21778 1.00935 0.98031 0.98965 1.21126 0.91997 0.99083 0.99571 0.91157 0.88977 0.90876 0.82417 0.83028 0.90366 0.89520 0.94900 0.92489 0.94161 0.92360 0.90443 0.92101 0.91670 0.92969 0.91439 0.92516 0.91203 0.93585 0.92956 0.91272 0.92405 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 10.01 71.24 0.71 -1.69 16 2 C -0.10 -3.12 5.87 -19.90 -0.12 -3.23 16 3 C -0.10 -2.85 9.69 22.33 0.22 -2.63 16 4 C -0.12 -3.77 9.67 22.23 0.21 -3.56 16 5 C -0.07 -2.66 5.91 -19.61 -0.12 -2.77 16 6 C -0.10 -3.76 9.15 71.24 0.65 -3.11 16 7 C -0.13 -5.32 4.98 -20.09 -0.10 -5.42 16 8 C 0.56 24.95 5.95 86.79 0.52 25.47 16 9 O -0.58 -27.62 16.16 -3.88 -0.06 -27.68 16 10 N -0.59 -25.59 2.46 -829.58 -2.04 -27.63 16 11 C 0.21 9.51 4.05 85.63 0.35 9.86 16 12 C -0.53 -29.55 9.94 25.60 0.25 -29.30 16 13 H 0.03 1.64 8.06 -2.91 -0.02 1.61 16 14 C 0.02 1.22 5.47 84.66 0.46 1.69 16 15 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 16 Si 0.93 40.68 27.47 68.60 1.88 42.57 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 20 C 0.12 4.47 5.15 86.38 0.44 4.91 16 21 C -0.12 -3.61 5.01 30.59 0.15 -3.45 16 22 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 23 C -0.15 -3.55 8.95 71.98 0.64 -2.90 16 24 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 25 C -0.10 -3.59 7.24 22.53 0.16 -3.42 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 28 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 29 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 33 H 0.03 1.38 7.26 -2.39 -0.02 1.36 16 34 H 0.06 2.52 3.26 -2.38 -0.01 2.52 16 35 H 0.04 1.73 7.53 -2.39 -0.02 1.72 16 36 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.08 3.02 6.50 -2.39 -0.02 3.00 16 38 H 0.06 2.43 7.49 -2.39 -0.02 2.41 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 1.23 6.57 -2.39 -0.02 1.22 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.13 4.27 7.26 -2.91 -0.02 4.24 16 Total: -1.00 -69.58 383.92 6.02 -63.56 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.86 Total: 29.83 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 5.08 Total: -24.06 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.74 Total: -84.22 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.06 Total: -27.68 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Total: -69.58 6.02 -63.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.586 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds