Wall clock time and date at job start Tue Mar 31 2020 08:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47128 * 2 1 4 4 C 1.52999 * 109.46685 * 295.00222 * 3 2 1 5 5 C 1.53005 * 109.46685 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47352 * 59.99734 * 5 4 3 7 7 N 1.46894 * 109.47162 * 180.02562 * 6 5 4 8 8 C 1.46903 * 110.99831 * 275.00163 * 7 6 5 9 9 C 1.50702 * 109.46896 * 180.02562 * 8 7 6 10 10 C 1.38304 * 119.92575 * 269.72481 * 9 8 7 11 11 C 1.38101 * 120.06580 * 179.73063 * 10 9 8 12 12 C 1.38881 * 119.92897 * 0.56401 * 11 10 9 13 13 O 1.35759 * 120.07052 * 179.68707 * 12 11 10 14 14 C 1.34826 * 117.00144 * 174.48485 * 13 12 11 15 15 H 1.08004 * 119.99732 * 5.06183 * 14 13 12 16 16 C 1.38655 * 119.99887 * 185.05528 * 14 13 12 17 17 N 1.31557 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47208 * 89.99849 * 18 16 14 20 20 H 1.48501 * 109.46759 * 210.00077 * 18 16 14 21 21 H 1.48502 * 109.47067 * 329.99963 * 18 16 14 22 22 C 1.38878 * 119.86511 * 359.70958 * 12 11 10 23 23 C 1.38106 * 119.92833 * 359.97438 * 22 12 11 24 24 C 1.52994 * 109.46862 * 300.00027 * 6 5 4 25 25 C 1.52995 * 109.47099 * 174.99731 * 3 2 1 26 26 H 1.09001 * 109.46709 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47512 * 60.00440 * 1 2 3 28 28 H 1.08999 * 109.47585 * 299.99888 * 1 2 3 29 29 H 1.09003 * 109.47268 * 120.00014 * 2 1 3 30 30 H 1.09002 * 109.47344 * 239.99653 * 2 1 3 31 31 H 1.09007 * 109.46913 * 54.99701 * 3 2 1 32 32 H 1.09007 * 109.47019 * 299.99414 * 4 3 2 33 33 H 1.08992 * 109.47805 * 59.99835 * 4 3 2 34 34 H 1.08998 * 109.47073 * 299.99724 * 5 4 3 35 35 H 1.08997 * 109.46886 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46798 * 59.99510 * 6 5 4 37 37 H 1.00903 * 111.00281 * 38.94926 * 7 6 5 38 38 H 1.09005 * 109.46957 * 299.99766 * 8 7 6 39 39 H 1.08995 * 109.47225 * 59.99989 * 8 7 6 40 40 H 1.07992 * 119.97005 * 359.97341 * 10 9 8 41 41 H 1.07998 * 120.03900 * 180.27465 * 11 10 9 42 42 H 0.96999 * 119.99267 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.04044 * 179.97438 * 22 12 11 44 44 H 1.07997 * 119.96597 * 180.02562 * 23 22 12 45 45 H 1.08998 * 109.47246 * 299.99816 * 24 6 5 46 46 H 1.09000 * 109.47042 * 179.97438 * 24 6 5 47 47 H 1.08996 * 109.47678 * 300.00049 * 25 3 2 48 48 H 1.08998 * 109.46982 * 60.00159 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1265 -1.3073 5 6 2.1457 3.5688 -1.3076 6 6 3.6706 3.5702 -1.1822 7 7 4.1607 4.9550 -1.1818 8 6 4.3360 5.4517 -2.5532 9 6 4.8392 6.8716 -2.5126 10 6 3.9399 7.9222 -2.4992 11 6 4.3977 9.2244 -2.4564 12 6 5.7630 9.4786 -2.4387 13 8 6.2163 10.7578 -2.4030 14 6 7.5468 10.9323 -2.2721 15 1 8.2071 10.0777 -2.2831 16 6 8.0672 12.2088 -2.1234 17 7 7.2628 13.2497 -2.1096 18 14 9.9107 12.4506 -1.9427 19 1 10.5208 12.6270 -3.2850 20 1 10.1731 13.6569 -1.1172 21 1 10.5037 11.2602 -1.2820 22 6 6.6636 8.4216 -2.4579 23 6 6.1993 7.1214 -2.4941 24 6 4.0753 2.8862 0.1251 25 6 3.5647 1.4444 0.1258 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6053 1.9816 0.8418 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3970 34 1 1.7114 4.1081 -0.4658 35 1 1.8577 4.0560 -2.2392 36 1 4.1048 3.0308 -2.0240 37 1 3.5448 5.5564 -0.6555 38 1 5.0583 4.8254 -3.0769 39 1 3.3803 5.4193 -3.0763 40 1 2.8785 7.7240 -2.5183 41 1 3.6950 10.0444 -2.4415 42 1 7.6269 14.1427 -2.0053 43 1 7.7258 8.6161 -2.4446 44 1 6.8991 6.2990 -2.5087 45 1 3.6410 3.4255 0.9669 46 1 5.1616 2.8867 0.2143 47 1 3.8532 0.9571 1.0571 48 1 3.9994 0.9053 -0.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048327159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:12 Heat of formation + Delta-G solvation = -38.098843 kcal Electronic energy + Delta-G solvation = -23916.374869 eV Core-core repulsion = 20549.173773 eV Total energy + Delta-G solvation = -3367.201096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.52595 -38.94163 -36.95573 -35.55215 -32.91835 -32.17757 -30.93913 -30.15073 -29.78483 -27.57541 -25.52144 -24.19916 -23.26203 -22.50473 -21.92888 -20.74042 -20.48873 -19.91555 -17.95353 -16.93776 -16.23539 -15.35220 -14.94458 -14.76101 -14.68734 -14.45188 -14.33053 -14.03609 -13.84234 -13.57881 -13.41495 -13.22195 -12.96203 -12.70849 -12.64687 -12.42889 -12.20178 -11.83963 -11.76406 -11.53978 -11.41440 -11.28282 -11.23642 -10.97257 -10.80223 -10.70601 -10.67023 -10.56236 -10.41658 -10.26979 -10.18372 -9.30382 -8.81549 -8.24924 -8.13289 -7.15405 -6.43295 -4.01926 2.24957 2.32408 3.13975 3.15191 3.20038 3.98413 4.17728 4.41918 4.45344 4.57551 4.74215 4.81096 4.91639 5.07279 5.11577 5.12843 5.20876 5.27410 5.30160 5.33519 5.34127 5.39900 5.48009 5.48519 5.62001 5.64027 5.69163 5.75912 5.80625 5.83907 5.89744 5.92558 5.94675 5.96277 6.04573 6.05776 6.23914 6.25008 6.27939 6.46395 6.73142 6.94085 7.06465 7.19600 7.25267 7.43634 7.46772 7.55280 7.86073 8.02127 9.02575 9.72990 10.74811 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.002150 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071096 B =13020.006551 C =13423.178655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.110 4.110 5 C -0.150 4.150 6 C 0.087 3.913 7 N -0.681 5.681 8 C 0.119 3.881 9 C -0.184 4.184 10 C -0.069 4.069 11 C -0.194 4.194 12 C 0.155 3.845 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.235 4.235 23 C -0.049 4.049 24 C -0.106 4.106 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.341 0.659 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 -23.497 2.832 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.107 4.107 4 C -0.148 4.148 5 C -0.189 4.189 6 C -0.023 4.023 7 N -0.311 5.311 8 C -0.009 4.009 9 C -0.185 4.185 10 C -0.088 4.088 11 C -0.213 4.213 12 C 0.101 3.899 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.068 4.068 24 C -0.144 4.144 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.372 -23.182 2.904 25.173 hybrid contribution -0.005 0.310 -0.183 0.360 sum -9.377 -22.872 2.721 24.869 Atomic orbital electron populations 1.21825 0.96053 1.01360 1.01924 1.21576 0.95785 0.96572 1.01826 1.21211 0.95766 0.95554 0.98139 1.21560 1.00419 0.95396 0.97409 1.22295 0.97570 0.97181 1.01838 1.21594 0.92070 0.90345 0.98262 1.60681 1.53790 1.02123 1.14486 1.20635 0.98387 0.93022 0.88900 1.19133 0.93555 0.93319 1.12516 1.20471 0.97762 0.91780 0.98773 1.20165 0.93036 0.96517 1.11596 1.19397 0.92693 0.85478 0.92290 1.83975 1.25746 1.20153 1.78350 1.21330 0.79436 0.94184 1.51768 0.89060 1.25290 1.00423 0.94287 0.96566 1.70042 1.35156 0.98705 1.45943 0.85715 0.80633 0.78482 0.78622 1.19907 1.20268 1.19173 1.21171 1.00245 0.92395 1.11639 1.20572 0.94345 0.95501 0.96401 1.21481 1.01288 0.94442 0.97235 1.21580 0.94873 0.97015 1.01676 0.93038 0.92502 0.92838 0.92138 0.92119 0.91290 0.92135 0.92023 0.91868 0.92171 0.90876 0.84032 0.91373 0.95514 0.87569 0.86667 0.92061 0.85624 0.87525 0.92091 0.91291 0.92027 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.77 5.40 -26.73 -0.14 -0.92 16 3 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 4 C -0.11 -0.84 4.96 -26.73 -0.13 -0.97 16 5 C -0.15 -1.34 5.17 -26.73 -0.14 -1.48 16 6 C 0.09 0.88 2.47 -67.72 -0.17 0.71 16 7 N -0.68 -8.52 6.24 -107.99 -0.67 -9.19 16 8 C 0.12 1.61 5.61 -4.97 -0.03 1.58 16 9 C -0.18 -3.14 5.40 -104.57 -0.56 -3.71 16 10 C -0.07 -1.23 9.69 -39.61 -0.38 -1.61 16 11 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 12 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 13 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 14 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 15 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.24 -5.20 9.17 -39.39 -0.36 -5.56 16 23 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 24 C -0.11 -1.00 5.53 -26.76 -0.15 -1.15 16 25 C -0.11 -0.88 5.20 -26.76 -0.14 -1.02 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 34 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 36 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 37 H 0.34 4.31 8.46 -39.29 -0.33 3.98 16 38 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 39 H 0.03 0.34 7.38 -51.93 -0.38 -0.04 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -29.64 377.40 -10.36 -40.00 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.23 Total: 5.35 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -2.89 Total: -27.62 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.09 Total: -33.94 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.64 -10.36 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048327159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.904 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds