Wall clock time and date at job start Tue Mar 31 2020 08:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47128 * 2 1 4 4 C 1.52999 * 109.46685 * 295.00222 * 3 2 1 5 5 C 1.53005 * 109.46685 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47352 * 59.99734 * 5 4 3 7 7 N 1.46894 * 109.47162 * 180.02562 * 6 5 4 8 8 C 1.46903 * 110.99831 * 275.00163 * 7 6 5 9 9 C 1.50702 * 109.46896 * 180.02562 * 8 7 6 10 10 C 1.38304 * 119.92575 * 269.72481 * 9 8 7 11 11 C 1.38101 * 120.06580 * 179.73063 * 10 9 8 12 12 C 1.38881 * 119.92897 * 0.56401 * 11 10 9 13 13 O 1.35759 * 120.07052 * 179.68707 * 12 11 10 14 14 C 1.34826 * 117.00144 * 174.48485 * 13 12 11 15 15 H 1.08004 * 119.99732 * 5.06183 * 14 13 12 16 16 C 1.38655 * 119.99887 * 185.05528 * 14 13 12 17 17 N 1.31557 * 120.00005 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47208 * 89.99849 * 18 16 14 20 20 H 1.48501 * 109.46759 * 210.00077 * 18 16 14 21 21 H 1.48502 * 109.47067 * 329.99963 * 18 16 14 22 22 C 1.38878 * 119.86511 * 359.70958 * 12 11 10 23 23 C 1.38106 * 119.92833 * 359.97438 * 22 12 11 24 24 C 1.52994 * 109.46862 * 300.00027 * 6 5 4 25 25 C 1.52995 * 109.47099 * 174.99731 * 3 2 1 26 26 H 1.09001 * 109.46709 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47512 * 60.00440 * 1 2 3 28 28 H 1.08999 * 109.47585 * 299.99888 * 1 2 3 29 29 H 1.09003 * 109.47268 * 120.00014 * 2 1 3 30 30 H 1.09002 * 109.47344 * 239.99653 * 2 1 3 31 31 H 1.09007 * 109.46913 * 54.99701 * 3 2 1 32 32 H 1.09007 * 109.47019 * 299.99414 * 4 3 2 33 33 H 1.08992 * 109.47805 * 59.99835 * 4 3 2 34 34 H 1.08998 * 109.47073 * 299.99724 * 5 4 3 35 35 H 1.08997 * 109.46886 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46798 * 59.99510 * 6 5 4 37 37 H 1.00903 * 111.00281 * 38.94926 * 7 6 5 38 38 H 1.09005 * 109.46957 * 299.99766 * 8 7 6 39 39 H 1.08995 * 109.47225 * 59.99989 * 8 7 6 40 40 H 1.07992 * 119.97005 * 359.97341 * 10 9 8 41 41 H 1.07998 * 120.03900 * 180.27465 * 11 10 9 42 42 H 0.96999 * 119.99267 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.04044 * 179.97438 * 22 12 11 44 44 H 1.07997 * 119.96597 * 180.02562 * 23 22 12 45 45 H 1.08998 * 109.47246 * 299.99816 * 24 6 5 46 46 H 1.09000 * 109.47042 * 179.97438 * 24 6 5 47 47 H 1.08996 * 109.47678 * 300.00049 * 25 3 2 48 48 H 1.08998 * 109.46982 * 60.00159 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1265 -1.3073 5 6 2.1457 3.5688 -1.3076 6 6 3.6706 3.5702 -1.1822 7 7 4.1607 4.9550 -1.1818 8 6 4.3360 5.4517 -2.5532 9 6 4.8392 6.8716 -2.5126 10 6 3.9399 7.9222 -2.4992 11 6 4.3977 9.2244 -2.4564 12 6 5.7630 9.4786 -2.4387 13 8 6.2163 10.7578 -2.4030 14 6 7.5468 10.9323 -2.2721 15 1 8.2071 10.0777 -2.2831 16 6 8.0672 12.2088 -2.1234 17 7 7.2628 13.2497 -2.1096 18 14 9.9107 12.4506 -1.9427 19 1 10.5208 12.6270 -3.2850 20 1 10.1731 13.6569 -1.1172 21 1 10.5037 11.2602 -1.2820 22 6 6.6636 8.4216 -2.4579 23 6 6.1993 7.1214 -2.4941 24 6 4.0753 2.8862 0.1251 25 6 3.5647 1.4444 0.1258 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6053 1.9816 0.8418 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3970 34 1 1.7114 4.1081 -0.4658 35 1 1.8577 4.0560 -2.2392 36 1 4.1048 3.0308 -2.0240 37 1 3.5448 5.5564 -0.6555 38 1 5.0583 4.8254 -3.0769 39 1 3.3803 5.4193 -3.0763 40 1 2.8785 7.7240 -2.5183 41 1 3.6950 10.0444 -2.4415 42 1 7.6269 14.1427 -2.0053 43 1 7.7258 8.6161 -2.4446 44 1 6.8991 6.2990 -2.5087 45 1 3.6410 3.4255 0.9669 46 1 5.1616 2.8867 0.2143 47 1 3.8532 0.9571 1.0571 48 1 3.9994 0.9053 -0.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048327159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:11 Heat of formation + Delta-G solvation = -54.106541 kcal Electronic energy + Delta-G solvation = -23917.069015 eV Core-core repulsion = 20549.173773 eV Total energy + Delta-G solvation = -3367.895242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81961 -40.12209 -38.51987 -36.55740 -34.37301 -33.58783 -31.79505 -31.62714 -30.98514 -28.57260 -27.39710 -25.39529 -23.97293 -23.62447 -23.21728 -22.01998 -21.36200 -20.66585 -19.82713 -18.81771 -17.18697 -16.45012 -16.31308 -16.08931 -15.86642 -15.53581 -15.42966 -15.34706 -15.08633 -14.69034 -14.57495 -14.40351 -14.23207 -13.88748 -13.62886 -13.55991 -13.27358 -13.03942 -12.93487 -12.63722 -12.51423 -12.38403 -12.23755 -12.13365 -12.05280 -11.95636 -11.92841 -11.53826 -11.32012 -11.17195 -10.97711 -10.89255 -10.77906 -9.76538 -9.22147 -8.87914 -8.46971 -6.14973 0.61349 0.69168 1.34866 1.44114 1.52539 2.18023 2.79236 3.11280 3.46782 3.53008 3.78058 3.83077 3.99654 4.05647 4.10222 4.18609 4.22869 4.29408 4.45419 4.49165 4.54350 4.59742 4.61700 4.65421 4.67932 4.71178 4.80635 4.83691 4.86023 4.99792 5.06751 5.10597 5.15767 5.17605 5.22342 5.27603 5.29098 5.31609 5.32607 5.40429 5.42011 5.57671 5.59375 5.65369 5.72940 5.84050 6.03526 6.18927 6.28894 6.54105 6.97860 7.78912 8.76284 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.002150 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071096 B =13020.006551 C =13423.178655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.085 4.085 4 C -0.107 4.107 5 C -0.145 4.145 6 C 0.091 3.909 7 N -0.691 5.691 8 C 0.124 3.876 9 C -0.157 4.157 10 C -0.060 4.060 11 C -0.205 4.205 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.244 4.244 23 C -0.051 4.051 24 C -0.104 4.104 25 C -0.109 4.109 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 -26.905 2.814 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.104 4.104 4 C -0.145 4.145 5 C -0.184 4.184 6 C -0.018 4.018 7 N -0.321 5.321 8 C -0.004 4.004 9 C -0.158 4.158 10 C -0.078 4.078 11 C -0.224 4.224 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.838 3.162 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.264 4.264 23 C -0.070 4.070 24 C -0.142 4.142 25 C -0.147 4.147 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.834 -26.659 2.883 28.561 hybrid contribution -0.092 1.038 -0.179 1.058 sum -9.926 -25.621 2.704 27.609 Atomic orbital electron populations 1.21824 0.95773 1.01724 1.01836 1.21552 0.96007 0.95915 1.02074 1.21173 0.95317 0.96079 0.97784 1.21537 1.00758 0.94555 0.97612 1.22226 0.96507 0.98006 1.01633 1.21603 0.92880 0.88782 0.98571 1.60631 1.54544 1.03298 1.13632 1.20613 0.99488 0.90371 0.89977 1.19646 0.92761 0.95412 1.07950 1.20876 0.99988 0.90173 0.96776 1.20440 0.91906 0.98324 1.11734 1.19952 0.94426 0.85003 0.94369 1.83938 1.26076 1.22562 1.81436 1.21809 0.79917 0.95015 1.52180 0.88229 1.26595 1.06023 0.93580 0.95929 1.70187 1.37752 0.99319 1.48651 0.84588 0.73658 0.78849 0.79115 1.18740 1.19526 1.17760 1.21257 0.99620 0.93425 1.12049 1.20902 0.95895 0.94668 0.95513 1.21443 1.00585 0.95438 0.96715 1.21544 0.95188 0.95841 1.02123 0.92505 0.92507 0.93001 0.91892 0.91891 0.91809 0.91887 0.91475 0.92138 0.92267 0.90731 0.84077 0.90320 0.93608 0.83667 0.86960 0.91859 0.86587 0.84796 0.92668 0.92372 0.91522 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.12 -1.23 5.40 30.59 0.17 -1.06 16 3 C -0.09 -1.03 2.19 -10.79 -0.02 -1.05 16 4 C -0.11 -1.33 4.96 30.60 0.15 -1.17 16 5 C -0.14 -2.14 5.17 30.60 0.16 -1.98 16 6 C 0.09 1.56 2.47 44.92 0.11 1.67 16 7 N -0.69 -15.02 6.24 -495.58 -3.09 -18.11 16 8 C 0.12 2.84 5.61 85.56 0.48 3.32 16 9 C -0.16 -4.88 5.40 -19.83 -0.11 -4.99 16 10 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 11 C -0.20 -8.82 9.99 22.39 0.22 -8.59 16 12 C 0.11 5.74 6.65 22.58 0.15 5.89 16 13 O -0.23 -14.34 9.76 -22.80 -0.22 -14.56 16 14 C -0.41 -24.53 9.49 67.92 0.64 -23.89 16 15 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 16 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 17 N -0.92 -57.25 13.67 21.61 0.30 -56.95 16 18 Si 1.02 43.55 29.55 68.60 2.03 45.57 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 23 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 24 C -0.10 -1.72 5.53 30.58 0.17 -1.55 16 25 C -0.11 -1.42 5.20 30.58 0.16 -1.26 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.56 6.57 -2.39 -0.02 0.54 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.79 6.56 -2.39 -0.02 0.77 16 34 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 35 H 0.06 0.90 7.45 -2.39 -0.02 0.88 16 36 H 0.07 1.29 7.80 -2.39 -0.02 1.28 16 37 H 0.34 7.54 8.46 -89.69 -0.76 6.78 16 38 H 0.08 1.72 8.00 -2.38 -0.02 1.70 16 39 H 0.05 0.93 7.38 -2.39 -0.02 0.91 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 44 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.41 377.40 3.26 -65.15 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.17 Total: 29.43 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 4.08 Total: -50.54 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.80 Total: -75.06 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.56 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.41 3.26 -65.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048327159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.046 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds