Wall clock time and date at job start Tue Mar 31 2020 08:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 C 1.52995 * 109.46765 * 239.99961 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00063 * 2 1 3 6 6 C 1.52997 * 109.47009 * 78.88004 * 5 2 1 7 7 C 1.52998 * 109.47475 * 68.55072 * 6 5 2 8 8 C 1.53010 * 109.47296 * 308.55200 * 6 5 2 9 9 N 1.46495 * 109.47290 * 188.55464 * 6 5 2 10 10 C 1.34779 * 120.00185 * 180.02562 * 9 6 5 11 11 O 1.21550 * 120.00150 * 359.97438 * 10 9 6 12 12 C 1.47882 * 119.99992 * 179.97438 * 10 9 6 13 13 C 1.39919 * 120.02621 * 359.97438 * 12 10 9 14 14 C 1.38337 * 120.36204 * 180.02562 * 13 12 10 15 15 C 1.37748 * 120.40772 * 359.97438 * 14 13 12 16 16 C 1.40755 * 120.04333 * 0.02562 * 15 14 13 17 17 C 1.41432 * 120.17776 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00316 * 29.66443 * 17 16 15 19 19 C 1.39938 * 119.99679 * 209.65895 * 17 16 15 20 20 N 1.30820 * 120.00395 * 11.43634 * 19 17 16 21 21 Si 1.86803 * 119.99883 * 191.44168 * 19 17 16 22 22 H 1.48508 * 109.47232 * 59.99521 * 21 19 17 23 23 H 1.48492 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47169 * 300.00246 * 21 19 17 25 25 C 1.38994 * 120.02670 * 179.97438 * 12 10 9 26 26 H 1.09007 * 109.47146 * 289.63559 * 1 2 3 27 27 H 1.09004 * 109.47448 * 49.63022 * 1 2 3 28 28 H 1.08995 * 109.47628 * 169.63865 * 1 2 3 29 29 H 1.08993 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46964 * 300.00531 * 3 2 1 31 31 H 1.08997 * 109.46964 * 60.00230 * 3 2 1 32 32 H 1.08996 * 109.47718 * 309.75140 * 4 2 1 33 33 H 1.09008 * 109.47493 * 69.75548 * 4 2 1 34 34 H 1.08998 * 109.47421 * 189.75117 * 4 2 1 35 35 H 1.09005 * 109.46747 * 318.88151 * 5 2 1 36 36 H 1.08996 * 109.47123 * 198.87714 * 5 2 1 37 37 H 1.08994 * 109.47510 * 144.21990 * 7 6 5 38 38 H 1.09007 * 109.46935 * 264.22538 * 7 6 5 39 39 H 1.09005 * 109.46604 * 24.21723 * 7 6 5 40 40 H 1.09002 * 109.46955 * 311.06776 * 8 6 5 41 41 H 1.09000 * 109.46955 * 71.06536 * 8 6 5 42 42 H 1.08998 * 109.47438 * 191.06945 * 8 6 5 43 43 H 0.97008 * 119.99870 * 359.97438 * 9 6 5 44 44 H 1.08001 * 119.82282 * 359.97438 * 13 12 10 45 45 H 1.07998 * 119.79750 * 180.02562 * 14 13 12 46 46 H 1.08002 * 119.97760 * 180.02562 * 15 14 13 47 47 H 0.97001 * 120.00531 * 180.02562 * 20 19 17 48 48 H 1.08000 * 120.19946 * 359.70955 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.9478 -2.2338 1.0382 7 6 2.9612 -2.6633 -0.0244 8 6 0.5363 -2.5988 0.5738 9 7 2.2403 -2.9214 2.2982 10 6 2.2183 -4.2680 2.3520 11 8 1.9553 -4.9118 1.3552 12 6 2.5142 -4.9621 3.6239 13 6 2.8175 -4.2215 4.7716 14 6 3.0959 -4.8636 5.9648 15 6 3.0772 -6.2391 6.0373 16 6 2.7742 -7.0010 4.8932 17 6 2.7537 -8.4133 4.9645 18 1 2.4921 -8.9036 5.8906 19 6 3.0721 -9.1756 3.8350 20 7 3.6017 -8.6008 2.7859 21 14 2.7410 -11.0140 3.8251 22 1 1.2894 -11.2566 4.0242 23 1 3.1638 -11.5861 2.5218 24 1 3.5057 -11.6607 4.9217 25 6 2.4911 -6.3507 3.6801 26 1 -0.3634 0.3454 0.9680 27 1 -0.3634 0.6656 -0.7830 28 1 -0.3634 -1.0108 -0.1848 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.5415 -1.6863 -1.3406 33 1 1.8257 -0.1168 -2.1307 34 1 3.1159 -0.8745 -1.1666 35 1 1.4312 -0.4363 2.1073 36 1 3.0779 -0.4425 1.4314 37 1 3.3662 -3.6417 0.2341 38 1 2.4684 -2.7190 -0.9951 39 1 3.7711 -1.9351 -0.0694 40 1 -0.1954 -2.1240 1.2275 41 1 0.3891 -2.2517 -0.4489 42 1 0.4096 -3.6808 0.6121 43 1 2.4506 -2.4076 3.0937 44 1 2.8353 -3.1426 4.7255 45 1 3.3285 -4.2830 6.8452 46 1 3.2952 -6.7332 6.9726 47 1 3.8221 -9.1290 2.0028 48 1 2.2529 -6.9262 2.7979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049637427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:38 Heat of formation + Delta-G solvation = -2.498212 kcal Electronic energy + Delta-G solvation = -25554.800268 eV Core-core repulsion = 22189.142931 eV Total energy + Delta-G solvation = -3365.657337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45734 -38.50766 -36.93785 -34.47335 -33.68469 -31.55009 -29.72087 -29.38714 -28.88773 -28.03437 -26.43353 -25.62716 -25.26579 -22.88850 -20.97871 -20.17318 -19.23235 -18.71036 -17.60824 -16.33102 -15.59285 -15.21907 -15.15055 -14.73197 -14.55815 -14.43638 -13.99603 -13.91826 -13.53534 -13.17747 -13.11059 -12.79066 -12.51669 -12.43763 -12.22271 -12.04253 -11.66071 -11.62106 -11.57632 -11.15480 -11.09377 -11.02186 -10.87564 -10.77983 -10.70085 -10.55871 -10.47617 -10.32606 -10.12810 -9.86040 -9.67425 -9.22689 -8.73047 -8.55676 -7.60153 -7.45824 -6.72395 -4.41063 2.23696 2.84076 3.09410 3.11406 3.16525 3.69642 3.90790 3.96171 4.61584 4.66755 4.69313 4.70612 5.07782 5.17202 5.25892 5.43827 5.47467 5.48097 5.60749 5.60873 5.68022 5.71400 5.73575 5.81454 5.83905 5.93671 5.98205 6.05353 6.09403 6.10556 6.18237 6.19005 6.26972 6.30341 6.32692 6.63938 6.65778 6.72739 7.00320 7.02566 7.11291 7.24221 7.40470 7.70933 7.78962 7.93938 8.16100 8.23822 8.53021 8.83993 8.85378 9.03872 10.22543 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.003388 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.103947 B = 8263.558962 C = 9000.459080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.170 4.170 5 C -0.112 4.112 6 C 0.180 3.820 7 C -0.170 4.170 8 C -0.177 4.177 9 N -0.731 5.731 10 C 0.566 3.434 11 O -0.541 6.541 12 C -0.132 4.132 13 C -0.212 4.212 14 C -0.102 4.102 15 C -0.207 4.207 16 C 0.099 3.901 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.793 5.793 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.084 4.084 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.283 0.717 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 15.109 -5.443 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.226 4.226 5 C -0.150 4.150 6 C 0.094 3.906 7 C -0.228 4.228 8 C -0.234 4.234 9 N -0.384 5.384 10 C 0.357 3.643 11 O -0.419 6.419 12 C -0.135 4.135 13 C -0.232 4.232 14 C -0.120 4.120 15 C -0.227 4.227 16 C 0.097 3.903 17 C -0.494 4.494 18 H 0.097 0.903 19 C -0.146 4.146 20 N -0.418 5.418 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.104 4.104 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.081 14.590 -6.417 16.234 hybrid contribution 0.166 -0.396 0.494 0.655 sum -2.916 14.194 -5.923 15.654 Atomic orbital electron populations 1.22574 0.94714 1.03831 1.01382 1.20366 0.95731 0.94885 0.95019 1.21886 1.00852 0.95459 1.01487 1.22926 1.02321 1.01053 0.96313 1.22011 1.01600 0.93455 0.97886 1.20144 0.95149 0.90599 0.84715 1.22945 0.98563 1.02240 0.99035 1.22841 0.95515 1.04189 1.00859 1.46152 1.73360 1.06810 1.12106 1.18727 0.75421 0.81134 0.89031 1.90651 1.48419 1.66098 1.36714 1.19562 1.07332 0.94821 0.91802 1.20384 1.12829 0.96570 0.93410 1.20448 1.00970 0.94618 0.95996 1.21167 1.09419 0.93099 0.99003 1.17613 0.88508 0.93531 0.90698 1.19520 1.41612 0.90916 0.97339 0.90281 1.25919 0.92617 1.01370 0.94677 1.69750 1.29233 1.38498 1.04296 0.86301 0.79957 0.81765 0.78292 1.18844 1.20279 1.19059 1.21633 0.98284 0.90942 0.99568 0.92911 0.93293 0.89818 0.92752 0.92781 0.92844 0.90138 0.93670 0.91382 0.91471 0.91447 0.91397 0.90597 0.92756 0.92694 0.90597 0.90367 0.76932 0.89253 0.88932 0.88611 0.90549 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 7.55 37.16 0.28 -1.25 16 2 C -0.06 -0.55 0.77 -154.51 -0.12 -0.67 16 3 C -0.14 -1.14 8.35 37.16 0.31 -0.83 16 4 C -0.17 -1.62 6.50 37.16 0.24 -1.38 16 5 C -0.11 -1.19 3.88 -26.73 -0.10 -1.30 16 6 C 0.18 2.47 0.80 -131.82 -0.11 2.36 16 7 C -0.17 -2.44 7.04 37.16 0.26 -2.18 16 8 C -0.18 -2.45 6.51 37.16 0.24 -2.21 16 9 N -0.73 -12.00 5.06 -48.53 -0.25 -12.24 16 10 C 0.57 12.10 6.85 -12.31 -0.08 12.02 16 11 O -0.54 -12.93 12.84 5.32 0.07 -12.86 16 12 C -0.13 -3.10 5.87 -105.04 -0.62 -3.71 16 13 C -0.21 -4.45 9.55 -38.92 -0.37 -4.82 16 14 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 15 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 16 C 0.10 2.62 5.53 -106.87 -0.59 2.03 16 17 C -0.46 -12.28 9.05 -37.73 -0.34 -12.62 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.84 5.23 -17.35 -0.09 1.75 16 20 N -0.79 -21.17 10.95 55.55 0.61 -20.56 16 21 Si 0.91 19.01 29.57 -169.99 -5.03 13.98 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 25 C -0.08 -2.24 8.19 -38.44 -0.31 -2.55 16 26 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 27 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.08 0.81 3.89 -51.93 -0.20 0.61 16 29 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.83 3.17 -51.93 -0.16 0.67 16 33 H 0.04 0.39 8.12 -51.92 -0.42 -0.03 16 34 H 0.07 0.66 5.62 -51.93 -0.29 0.37 16 35 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 36 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 37 H 0.07 1.24 6.11 -51.93 -0.32 0.92 16 38 H 0.08 0.98 4.93 -51.93 -0.26 0.73 16 39 H 0.05 0.68 6.12 -51.93 -0.32 0.36 16 40 H 0.05 0.71 7.06 -51.93 -0.37 0.34 16 41 H 0.08 0.89 3.65 -51.93 -0.19 0.70 16 42 H 0.08 1.37 5.94 -51.93 -0.31 1.07 16 43 H 0.40 5.75 6.49 -40.82 -0.26 5.48 16 44 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 47 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 48 H 0.13 3.83 5.91 -52.49 -0.31 3.52 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -28.68 352.92 -8.51 -37.19 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.05 Total: 12.43 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.18 Total: -23.25 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.36 Total: -32.80 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.68 -8.51 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049637427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.688 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds