Wall clock time and date at job start Tue Mar 31 2020 08:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 C 1.52995 * 109.46765 * 239.99961 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00063 * 2 1 3 6 6 C 1.52997 * 109.47009 * 78.88004 * 5 2 1 7 7 C 1.52998 * 109.47475 * 68.55072 * 6 5 2 8 8 C 1.53010 * 109.47296 * 308.55200 * 6 5 2 9 9 N 1.46495 * 109.47290 * 188.55464 * 6 5 2 10 10 C 1.34779 * 120.00185 * 180.02562 * 9 6 5 11 11 O 1.21550 * 120.00150 * 359.97438 * 10 9 6 12 12 C 1.47882 * 119.99992 * 179.97438 * 10 9 6 13 13 C 1.39919 * 120.02621 * 359.97438 * 12 10 9 14 14 C 1.38337 * 120.36204 * 180.02562 * 13 12 10 15 15 C 1.37748 * 120.40772 * 359.97438 * 14 13 12 16 16 C 1.40755 * 120.04333 * 0.02562 * 15 14 13 17 17 C 1.41432 * 120.17776 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00316 * 29.66443 * 17 16 15 19 19 C 1.39938 * 119.99679 * 209.65895 * 17 16 15 20 20 N 1.30820 * 120.00395 * 11.43634 * 19 17 16 21 21 Si 1.86803 * 119.99883 * 191.44168 * 19 17 16 22 22 H 1.48508 * 109.47232 * 59.99521 * 21 19 17 23 23 H 1.48492 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47169 * 300.00246 * 21 19 17 25 25 C 1.38994 * 120.02670 * 179.97438 * 12 10 9 26 26 H 1.09007 * 109.47146 * 289.63559 * 1 2 3 27 27 H 1.09004 * 109.47448 * 49.63022 * 1 2 3 28 28 H 1.08995 * 109.47628 * 169.63865 * 1 2 3 29 29 H 1.08993 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46964 * 300.00531 * 3 2 1 31 31 H 1.08997 * 109.46964 * 60.00230 * 3 2 1 32 32 H 1.08996 * 109.47718 * 309.75140 * 4 2 1 33 33 H 1.09008 * 109.47493 * 69.75548 * 4 2 1 34 34 H 1.08998 * 109.47421 * 189.75117 * 4 2 1 35 35 H 1.09005 * 109.46747 * 318.88151 * 5 2 1 36 36 H 1.08996 * 109.47123 * 198.87714 * 5 2 1 37 37 H 1.08994 * 109.47510 * 144.21990 * 7 6 5 38 38 H 1.09007 * 109.46935 * 264.22538 * 7 6 5 39 39 H 1.09005 * 109.46604 * 24.21723 * 7 6 5 40 40 H 1.09002 * 109.46955 * 311.06776 * 8 6 5 41 41 H 1.09000 * 109.46955 * 71.06536 * 8 6 5 42 42 H 1.08998 * 109.47438 * 191.06945 * 8 6 5 43 43 H 0.97008 * 119.99870 * 359.97438 * 9 6 5 44 44 H 1.08001 * 119.82282 * 359.97438 * 13 12 10 45 45 H 1.07998 * 119.79750 * 180.02562 * 14 13 12 46 46 H 1.08002 * 119.97760 * 180.02562 * 15 14 13 47 47 H 0.97001 * 120.00531 * 180.02562 * 20 19 17 48 48 H 1.08000 * 120.19946 * 359.70955 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.9478 -2.2338 1.0382 7 6 2.9612 -2.6633 -0.0244 8 6 0.5363 -2.5988 0.5738 9 7 2.2403 -2.9214 2.2982 10 6 2.2183 -4.2680 2.3520 11 8 1.9553 -4.9118 1.3552 12 6 2.5142 -4.9621 3.6239 13 6 2.8175 -4.2215 4.7716 14 6 3.0959 -4.8636 5.9648 15 6 3.0772 -6.2391 6.0373 16 6 2.7742 -7.0010 4.8932 17 6 2.7537 -8.4133 4.9645 18 1 2.4921 -8.9036 5.8906 19 6 3.0721 -9.1756 3.8350 20 7 3.6017 -8.6008 2.7859 21 14 2.7410 -11.0140 3.8251 22 1 1.2894 -11.2566 4.0242 23 1 3.1638 -11.5861 2.5218 24 1 3.5057 -11.6607 4.9217 25 6 2.4911 -6.3507 3.6801 26 1 -0.3634 0.3454 0.9680 27 1 -0.3634 0.6656 -0.7830 28 1 -0.3634 -1.0108 -0.1848 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.5415 -1.6863 -1.3406 33 1 1.8257 -0.1168 -2.1307 34 1 3.1159 -0.8745 -1.1666 35 1 1.4312 -0.4363 2.1073 36 1 3.0779 -0.4425 1.4314 37 1 3.3662 -3.6417 0.2341 38 1 2.4684 -2.7190 -0.9951 39 1 3.7711 -1.9351 -0.0694 40 1 -0.1954 -2.1240 1.2275 41 1 0.3891 -2.2517 -0.4489 42 1 0.4096 -3.6808 0.6121 43 1 2.4506 -2.4076 3.0937 44 1 2.8353 -3.1426 4.7255 45 1 3.3285 -4.2830 6.8452 46 1 3.2952 -6.7332 6.9726 47 1 3.8221 -9.1290 2.0028 48 1 2.2529 -6.9262 2.7979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049637427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:37 Heat of formation + Delta-G solvation = -18.010953 kcal Electronic energy + Delta-G solvation = -25555.472951 eV Core-core repulsion = 22189.142931 eV Total energy + Delta-G solvation = -3366.330020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69673 -39.93810 -38.64167 -35.79178 -35.50979 -32.99848 -31.41982 -31.14633 -29.83740 -28.95858 -27.25459 -27.13012 -26.55759 -24.55135 -22.81273 -21.63231 -20.52544 -19.91729 -19.18342 -17.93946 -16.92609 -16.90853 -16.45839 -16.19051 -15.89430 -15.67897 -15.20012 -15.06190 -14.89818 -14.79791 -14.34511 -14.22256 -14.06476 -13.65937 -13.48047 -13.02153 -12.95714 -12.90486 -12.81157 -12.54922 -12.50031 -12.35610 -12.19765 -12.02046 -11.92810 -11.81686 -11.57123 -11.50325 -11.48646 -11.22943 -11.10009 -11.04216 -10.28283 -10.01906 -9.43130 -9.34294 -8.60915 -6.40012 0.41309 1.01992 1.35942 1.47735 1.49173 2.15852 2.21403 2.30722 2.83226 3.68204 3.69259 3.87194 3.92289 4.02417 4.15916 4.24081 4.30157 4.42370 4.57715 4.62326 4.70055 4.72096 4.76505 4.80054 4.89199 4.90375 4.96509 4.98543 5.06390 5.08398 5.09751 5.16008 5.18417 5.19362 5.27342 5.32721 5.40508 5.45685 5.47141 5.53283 5.58850 5.68624 5.76385 5.87655 5.93470 6.05823 6.30046 6.55215 6.77549 6.89838 6.95339 7.43603 8.35544 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.003388 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.103947 B = 8263.558962 C = 9000.459080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.171 4.171 5 C -0.104 4.104 6 C 0.175 3.825 7 C -0.167 4.167 8 C -0.172 4.172 9 N -0.710 5.710 10 C 0.562 3.438 11 O -0.575 6.575 12 C -0.143 4.143 13 C -0.192 4.192 14 C -0.100 4.100 15 C -0.213 4.213 16 C 0.066 3.934 17 C -0.502 4.502 18 H 0.082 0.918 19 C 0.027 3.973 20 N -0.834 5.834 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.121 4.121 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.408 0.592 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.108 0.892 47 H 0.284 0.716 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 18.219 -4.590 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.057 4.057 3 C -0.194 4.194 4 C -0.227 4.227 5 C -0.142 4.142 6 C 0.091 3.909 7 C -0.224 4.224 8 C -0.229 4.229 9 N -0.363 5.363 10 C 0.352 3.648 11 O -0.456 6.456 12 C -0.147 4.147 13 C -0.212 4.212 14 C -0.117 4.117 15 C -0.233 4.233 16 C 0.064 3.936 17 C -0.532 4.532 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.461 5.461 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.245 0.755 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.126 0.874 47 H 0.094 0.906 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.097 17.757 -5.538 18.856 hybrid contribution 0.161 -1.130 0.244 1.167 sum -2.936 16.627 -5.294 17.695 Atomic orbital electron populations 1.22550 0.94491 1.03459 1.02016 1.20362 0.95872 0.95545 0.93952 1.21853 1.01028 0.94312 1.02193 1.22883 1.02042 1.00620 0.97155 1.21998 1.02644 0.90385 0.99162 1.20419 0.94746 0.92584 0.83197 1.22984 0.99379 1.00212 0.99833 1.22841 0.95991 1.01359 1.02696 1.46017 1.71498 1.05035 1.13755 1.18574 0.75633 0.82719 0.87903 1.90640 1.50034 1.67329 1.37610 1.19921 1.06660 0.94182 0.93905 1.20898 1.09443 0.98786 0.92061 1.20937 0.99253 0.93858 0.97699 1.21468 1.08745 0.94562 0.98509 1.17959 0.89609 0.94285 0.91736 1.19810 1.43549 0.91666 0.98167 0.89988 1.26821 0.91780 1.06144 0.93914 1.69871 1.30943 1.40226 1.05050 0.85218 0.79844 0.75780 0.78661 1.18509 1.19748 1.17750 1.21412 1.01530 0.92446 0.98789 0.92511 0.92299 0.90819 0.92487 0.92063 0.92235 0.91459 0.92465 0.91540 0.90372 0.90466 0.95922 0.89512 0.90648 0.91568 0.88451 0.94627 0.75488 0.84603 0.84351 0.87372 0.90557 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 7.55 71.98 0.54 -2.01 16 2 C -0.06 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.71 8.35 71.98 0.60 -1.11 16 4 C -0.17 -2.83 6.50 71.98 0.47 -2.36 16 5 C -0.10 -1.88 3.88 30.59 0.12 -1.76 16 6 C 0.18 4.58 0.80 3.61 0.00 4.58 16 7 C -0.17 -4.71 7.04 71.98 0.51 -4.20 16 8 C -0.17 -4.68 6.51 71.99 0.47 -4.21 16 9 N -0.71 -22.43 5.06 -425.72 -2.15 -24.58 16 10 C 0.56 24.58 6.85 86.80 0.59 25.17 16 11 O -0.58 -29.26 12.84 -3.87 -0.05 -29.31 16 12 C -0.14 -6.84 5.87 -20.14 -0.12 -6.96 16 13 C -0.19 -7.59 9.55 22.70 0.22 -7.37 16 14 C -0.10 -3.97 10.01 22.18 0.22 -3.75 16 15 C -0.21 -10.08 9.78 22.77 0.22 -9.86 16 16 C 0.07 3.66 5.53 -21.32 -0.12 3.54 16 17 C -0.50 -27.85 9.05 23.47 0.21 -27.64 16 18 H 0.08 4.29 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.44 5.23 85.26 0.45 1.88 16 20 N -0.83 -47.57 10.95 21.82 0.24 -47.33 16 21 Si 0.98 40.54 29.57 68.60 2.03 42.57 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 25 C -0.12 -6.82 8.19 23.01 0.19 -6.63 16 26 H 0.06 0.82 7.92 -2.38 -0.02 0.81 16 27 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 28 H 0.07 1.26 3.89 -2.39 -0.01 1.25 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.29 3.17 -2.39 -0.01 1.28 16 33 H 0.06 0.82 8.12 -2.38 -0.02 0.80 16 34 H 0.07 1.12 5.62 -2.39 -0.01 1.11 16 35 H 0.08 1.29 7.84 -2.38 -0.02 1.27 16 36 H 0.08 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.02 0.84 6.11 -2.39 -0.01 0.82 16 38 H 0.09 2.23 4.93 -2.38 -0.01 2.22 16 39 H 0.07 1.76 6.12 -2.38 -0.01 1.74 16 40 H 0.07 1.62 7.06 -2.39 -0.02 1.60 16 41 H 0.10 2.21 3.65 -2.39 -0.01 2.20 16 42 H 0.03 1.29 5.94 -2.39 -0.01 1.27 16 43 H 0.41 10.57 6.49 -92.70 -0.60 9.96 16 44 H 0.14 4.05 6.38 -2.91 -0.02 4.03 16 45 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 46 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 48 H 0.10 6.05 5.91 -2.91 -0.02 6.03 16 Total: -1.00 -68.33 352.92 4.98 -63.34 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: 0.38 Total: 38.91 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 4.54 Total: -43.60 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.91 Total: -71.91 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.33 4.98 -63.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049637427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.332 kcal (2) G-P(sol) polarization free energy of solvation -68.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds