Wall clock time and date at job start Tue Mar 31 2020 08:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 C 1.52999 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47159 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47091 * 54.99168 * 7 6 5 9 9 C 1.52999 * 109.47297 * 174.99900 * 7 6 5 10 10 N 1.46508 * 109.46891 * 294.99569 * 7 6 5 11 11 C 1.34782 * 119.99759 * 155.27509 * 10 7 6 12 12 O 1.21545 * 120.00121 * 359.72290 * 11 10 7 13 13 C 1.47888 * 119.99638 * 179.72726 * 11 10 7 14 14 C 1.39915 * 120.02364 * 359.72513 * 13 11 10 15 15 C 1.38337 * 120.35293 * 179.71833 * 14 13 11 16 16 C 1.37752 * 120.41410 * 0.55928 * 15 14 13 17 17 C 1.40752 * 120.03495 * 359.71854 * 16 15 14 18 18 C 1.41438 * 120.17503 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99955 * 24.43408 * 18 17 16 20 20 C 1.39939 * 120.00310 * 204.43608 * 18 17 16 21 21 N 1.30826 * 119.99591 * 17.88984 * 20 18 17 22 22 Si 1.86795 * 120.00089 * 197.89186 * 20 18 17 23 23 H 1.48492 * 109.47209 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47222 * 119.99802 * 22 20 18 25 25 H 1.48502 * 109.46909 * 239.99772 * 22 20 18 26 26 C 1.38990 * 120.02229 * 179.97438 * 13 11 10 27 27 H 1.08994 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46778 * 299.99089 * 1 2 3 29 29 H 1.08993 * 109.47366 * 59.99570 * 1 2 3 30 30 H 1.09010 * 109.46945 * 240.00396 * 2 1 3 31 31 H 1.09001 * 109.47419 * 120.00735 * 2 1 3 32 32 H 1.09008 * 109.46470 * 60.00722 * 3 2 1 33 33 H 1.08993 * 109.47271 * 300.00488 * 3 2 1 34 34 H 1.08997 * 109.46803 * 60.00169 * 4 3 2 35 35 H 1.09001 * 109.47419 * 300.00735 * 4 3 2 36 36 H 1.08994 * 109.47256 * 60.00584 * 5 4 3 37 37 H 1.08999 * 109.46629 * 299.99943 * 5 4 3 38 38 H 1.08997 * 109.47238 * 59.99475 * 6 5 4 39 39 H 1.09003 * 109.46547 * 300.00008 * 6 5 4 40 40 H 1.09001 * 109.46950 * 59.99393 * 9 7 6 41 41 H 1.08994 * 109.47087 * 179.97438 * 9 7 6 42 42 H 1.08998 * 109.46674 * 299.99464 * 9 7 6 43 43 H 0.96995 * 119.99809 * 335.00289 * 10 7 6 44 44 H 1.08000 * 119.82448 * 359.97438 * 14 13 11 45 45 H 1.08004 * 119.79037 * 180.26197 * 15 14 13 46 46 H 1.07992 * 119.98106 * 179.74389 * 16 15 14 47 47 H 0.97004 * 119.99686 * 180.02562 * 21 20 18 48 48 H 1.08005 * 120.20193 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6101 2.8850 0.0013 7 6 6.1201 4.3274 0.0026 8 1 5.6854 4.8657 0.8448 9 6 7.6449 4.3291 0.1283 10 7 5.7326 4.9835 -1.2488 11 6 5.6112 6.3250 -1.2968 12 8 5.8182 6.9900 -0.3007 13 6 5.2259 6.9876 -2.5615 14 6 4.9929 6.2230 -3.7098 15 6 4.6265 6.8353 -4.8950 16 6 4.4980 8.2052 -4.9615 17 6 4.7339 8.9913 -3.8180 18 6 4.6023 10.3980 -3.8828 19 1 3.9677 10.8470 -4.6326 20 6 5.2942 11.2081 -2.9755 21 7 6.3112 10.7240 -2.3100 22 14 4.7657 12.9807 -2.7145 23 1 3.5981 13.2817 -3.5811 24 1 4.3915 13.1813 -1.2915 25 1 5.8880 13.8883 -3.0640 26 6 5.1000 8.3709 -2.6115 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3985 0.8913 37 1 3.7170 3.3990 -0.8887 38 1 5.9734 2.3715 -0.8888 39 1 5.9733 2.3707 0.8911 40 1 8.0795 3.7908 -0.7139 41 1 8.0082 5.3567 0.1288 42 1 7.9331 3.8411 1.0593 43 1 5.5672 4.4527 -2.0436 44 1 5.0956 5.1486 -3.6697 45 1 4.4448 6.2359 -5.7748 46 1 4.2156 8.6762 -5.8913 47 1 6.7906 11.2854 -1.6808 48 1 5.2824 8.9654 -1.7284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051082221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:34 Heat of formation + Delta-G solvation = -66.483363 kcal Electronic energy + Delta-G solvation = -24164.024281 eV Core-core repulsion = 20795.592340 eV Total energy + Delta-G solvation = -3368.431942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.38777 -37.40913 -36.71773 -35.45054 -33.74882 -32.80735 -31.12827 -29.58617 -29.33914 -28.24456 -25.31603 -24.60531 -22.93200 -21.47202 -21.11612 -21.00190 -20.36672 -19.54490 -17.72001 -16.28889 -16.11308 -15.69973 -15.07996 -14.66811 -14.48623 -14.42669 -14.16190 -13.71954 -13.59808 -13.42498 -13.12488 -12.82501 -12.68597 -12.59544 -12.48048 -12.05133 -11.77779 -11.67786 -11.61219 -11.51908 -11.16114 -11.09382 -11.06722 -10.92379 -10.82321 -10.68341 -10.58687 -10.48313 -10.33545 -9.99631 -9.67343 -9.21027 -8.95583 -8.59256 -7.61202 -7.50663 -6.79361 -4.40294 2.24120 2.81785 3.08480 3.13394 3.15697 3.75596 3.90190 3.93512 4.43262 4.65395 4.70136 4.83866 4.89505 4.96666 5.07881 5.24325 5.33843 5.44880 5.50233 5.56454 5.62413 5.64234 5.65740 5.68357 5.78888 5.81295 5.85647 5.89284 5.94973 5.95733 6.07658 6.11934 6.18781 6.28604 6.30525 6.31539 6.41241 6.73658 6.96580 7.01144 7.05640 7.22703 7.39864 7.72088 7.78621 7.94571 8.14046 8.22366 8.52367 8.81546 8.84971 9.01893 10.15352 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002922 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.675291 B = 9581.754927 C =10254.991540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.124 4.124 7 C 0.142 3.858 8 H 0.084 0.916 9 C -0.163 4.163 10 N -0.730 5.730 11 C 0.564 3.436 12 O -0.547 6.547 13 C -0.128 4.128 14 C -0.217 4.217 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.093 4.093 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.284 0.716 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 -16.924 4.454 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.162 4.162 7 C 0.037 3.963 8 H 0.102 0.898 9 C -0.222 4.222 10 N -0.384 5.384 11 C 0.355 3.645 12 O -0.426 6.426 13 C -0.131 4.131 14 C -0.238 4.238 15 C -0.117 4.117 16 C -0.232 4.232 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.113 4.113 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.420 -16.374 5.360 17.565 hybrid contribution -0.110 0.476 -0.308 0.577 sum -3.530 -15.899 5.051 17.051 Atomic orbital electron populations 1.21786 0.96038 1.01385 1.01924 1.21539 0.95771 0.97150 1.01759 1.21643 0.95589 0.96479 1.02297 1.21601 0.95279 0.96939 1.01735 1.21621 0.94993 0.96479 1.02861 1.21886 0.95983 0.95745 1.02597 1.20862 0.94540 0.92541 0.88393 0.89799 1.22184 0.95935 1.02792 1.01250 1.46041 1.72200 1.07323 1.12849 1.18832 0.75505 0.81217 0.88968 1.90685 1.50713 1.64320 1.36836 1.19500 1.06857 0.94876 0.91859 1.20333 1.13036 0.96558 0.93831 1.20434 1.00483 0.94715 0.96019 1.21092 1.11467 0.93200 0.97485 1.17611 0.89214 0.93475 0.90145 1.19615 1.24419 0.90872 1.13949 0.90066 1.25969 0.93224 1.01363 0.94066 1.69803 1.13153 1.38326 1.19433 0.86245 0.79736 0.81419 0.79278 1.18338 1.19553 1.19927 1.21640 0.99593 0.91201 0.98895 0.92982 0.92793 0.92674 0.92164 0.92270 0.92072 0.91843 0.92133 0.92274 0.91932 0.91417 0.91581 0.90832 0.92729 0.91843 0.92233 0.76768 0.89301 0.88971 0.88667 0.90512 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 4 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 5 C -0.12 -1.27 5.10 -26.73 -0.14 -1.41 16 6 C -0.12 -1.26 4.75 -26.73 -0.13 -1.39 16 7 C 0.14 1.96 2.57 -67.93 -0.17 1.78 16 8 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 9 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 10 N -0.73 -11.97 4.48 -54.73 -0.25 -12.22 16 11 C 0.56 12.33 7.74 -12.31 -0.10 12.24 16 12 O -0.55 -13.75 16.00 5.33 0.09 -13.67 16 13 C -0.13 -3.03 5.87 -105.04 -0.62 -3.64 16 14 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 15 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 16 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 17 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 18 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 20 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 21 N -0.78 -20.90 10.96 55.55 0.61 -20.29 16 22 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.09 -2.50 8.24 -38.45 -0.32 -2.82 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.40 5.71 6.62 -40.82 -0.27 5.44 16 44 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 45 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 47 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 48 H 0.13 3.88 5.74 -52.48 -0.30 3.58 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -29.25 390.00 -10.50 -39.75 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.44 Total: 9.58 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.36 Total: -22.89 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.36 Total: -32.51 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.25 -10.50 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051082221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.734 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds