Wall clock time and date at job start Tue Mar 31 2020 08:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 C 1.52999 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47159 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47091 * 54.99168 * 7 6 5 9 9 C 1.52999 * 109.47297 * 174.99900 * 7 6 5 10 10 N 1.46508 * 109.46891 * 294.99569 * 7 6 5 11 11 C 1.34782 * 119.99759 * 155.27509 * 10 7 6 12 12 O 1.21545 * 120.00121 * 359.72290 * 11 10 7 13 13 C 1.47888 * 119.99638 * 179.72726 * 11 10 7 14 14 C 1.39915 * 120.02364 * 359.72513 * 13 11 10 15 15 C 1.38337 * 120.35293 * 179.71833 * 14 13 11 16 16 C 1.37752 * 120.41410 * 0.55928 * 15 14 13 17 17 C 1.40752 * 120.03495 * 359.71854 * 16 15 14 18 18 C 1.41438 * 120.17503 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99955 * 24.43408 * 18 17 16 20 20 C 1.39939 * 120.00310 * 204.43608 * 18 17 16 21 21 N 1.30826 * 119.99591 * 17.88984 * 20 18 17 22 22 Si 1.86795 * 120.00089 * 197.89186 * 20 18 17 23 23 H 1.48492 * 109.47209 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47222 * 119.99802 * 22 20 18 25 25 H 1.48502 * 109.46909 * 239.99772 * 22 20 18 26 26 C 1.38990 * 120.02229 * 179.97438 * 13 11 10 27 27 H 1.08994 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46778 * 299.99089 * 1 2 3 29 29 H 1.08993 * 109.47366 * 59.99570 * 1 2 3 30 30 H 1.09010 * 109.46945 * 240.00396 * 2 1 3 31 31 H 1.09001 * 109.47419 * 120.00735 * 2 1 3 32 32 H 1.09008 * 109.46470 * 60.00722 * 3 2 1 33 33 H 1.08993 * 109.47271 * 300.00488 * 3 2 1 34 34 H 1.08997 * 109.46803 * 60.00169 * 4 3 2 35 35 H 1.09001 * 109.47419 * 300.00735 * 4 3 2 36 36 H 1.08994 * 109.47256 * 60.00584 * 5 4 3 37 37 H 1.08999 * 109.46629 * 299.99943 * 5 4 3 38 38 H 1.08997 * 109.47238 * 59.99475 * 6 5 4 39 39 H 1.09003 * 109.46547 * 300.00008 * 6 5 4 40 40 H 1.09001 * 109.46950 * 59.99393 * 9 7 6 41 41 H 1.08994 * 109.47087 * 179.97438 * 9 7 6 42 42 H 1.08998 * 109.46674 * 299.99464 * 9 7 6 43 43 H 0.96995 * 119.99809 * 335.00289 * 10 7 6 44 44 H 1.08000 * 119.82448 * 359.97438 * 14 13 11 45 45 H 1.08004 * 119.79037 * 180.26197 * 15 14 13 46 46 H 1.07992 * 119.98106 * 179.74389 * 16 15 14 47 47 H 0.97004 * 119.99686 * 180.02562 * 21 20 18 48 48 H 1.08005 * 120.20193 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6101 2.8850 0.0013 7 6 6.1201 4.3274 0.0026 8 1 5.6854 4.8657 0.8448 9 6 7.6449 4.3291 0.1283 10 7 5.7326 4.9835 -1.2488 11 6 5.6112 6.3250 -1.2968 12 8 5.8182 6.9900 -0.3007 13 6 5.2259 6.9876 -2.5615 14 6 4.9929 6.2230 -3.7098 15 6 4.6265 6.8353 -4.8950 16 6 4.4980 8.2052 -4.9615 17 6 4.7339 8.9913 -3.8180 18 6 4.6023 10.3980 -3.8828 19 1 3.9677 10.8470 -4.6326 20 6 5.2942 11.2081 -2.9755 21 7 6.3112 10.7240 -2.3100 22 14 4.7657 12.9807 -2.7145 23 1 3.5981 13.2817 -3.5811 24 1 4.3915 13.1813 -1.2915 25 1 5.8880 13.8883 -3.0640 26 6 5.1000 8.3709 -2.6115 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3985 0.8913 37 1 3.7170 3.3990 -0.8887 38 1 5.9734 2.3715 -0.8888 39 1 5.9733 2.3707 0.8911 40 1 8.0795 3.7908 -0.7139 41 1 8.0082 5.3567 0.1288 42 1 7.9331 3.8411 1.0593 43 1 5.5672 4.4527 -2.0436 44 1 5.0956 5.1486 -3.6697 45 1 4.4448 6.2359 -5.7748 46 1 4.2156 8.6762 -5.8913 47 1 6.7906 11.2854 -1.6808 48 1 5.2824 8.9654 -1.7284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051082221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:33 Heat of formation + Delta-G solvation = -80.772818 kcal Electronic energy + Delta-G solvation = -24164.643919 eV Core-core repulsion = 20795.592340 eV Total energy + Delta-G solvation = -3369.051579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01270 -39.00260 -37.91058 -36.50825 -35.61663 -33.86447 -32.54014 -31.34178 -30.99583 -29.06752 -27.21660 -25.52908 -24.45946 -22.85421 -22.29603 -21.84642 -21.50419 -21.22452 -19.51266 -17.89284 -17.46348 -16.83297 -16.62577 -16.40643 -15.88314 -15.52008 -15.33887 -14.97680 -14.93616 -14.56491 -14.42094 -14.30461 -14.25547 -13.57476 -13.52028 -13.44244 -13.13983 -12.91953 -12.79407 -12.67136 -12.55172 -12.41427 -12.23298 -12.18624 -11.91783 -11.84902 -11.74061 -11.53433 -11.50021 -11.30786 -11.17498 -11.08713 -10.72339 -10.07830 -9.46670 -9.38367 -8.67572 -6.38763 0.39601 1.00101 1.35208 1.45809 1.51682 2.12333 2.18646 2.31941 2.78884 3.61244 3.70093 3.97660 4.01879 4.09265 4.15079 4.23392 4.28424 4.40005 4.43140 4.56601 4.60281 4.63511 4.66349 4.78738 4.84749 4.88754 4.91598 4.95266 5.02342 5.07592 5.10031 5.14948 5.19343 5.21456 5.26137 5.28011 5.31614 5.33809 5.44886 5.50732 5.51957 5.57549 5.65276 5.87258 5.93113 6.05316 6.28703 6.53157 6.72963 6.87401 6.94597 7.37448 8.29378 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002922 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.675291 B = 9581.754927 C =10254.991540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.136 3.864 8 H 0.058 0.942 9 C -0.159 4.159 10 N -0.705 5.705 11 C 0.560 3.440 12 O -0.591 6.591 13 C -0.139 4.139 14 C -0.196 4.196 15 C -0.096 4.096 16 C -0.218 4.218 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.251 1.251 24 H -0.271 1.271 25 H -0.263 1.263 26 C -0.133 4.133 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.087 0.913 43 H 0.410 0.590 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.108 0.892 47 H 0.286 0.714 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -20.055 3.455 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.149 4.149 7 C 0.032 3.968 8 H 0.077 0.923 9 C -0.217 4.217 10 N -0.358 5.358 11 C 0.350 3.650 12 O -0.473 6.473 13 C -0.142 4.142 14 C -0.216 4.216 15 C -0.114 4.114 16 C -0.238 4.238 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.174 1.174 24 H -0.196 1.196 25 H -0.188 1.188 26 C -0.154 4.154 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.105 0.895 43 H 0.248 0.752 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.126 0.874 47 H 0.096 0.904 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.637 -19.571 4.333 20.372 hybrid contribution -0.059 1.218 -0.031 1.220 sum -3.696 -18.353 4.302 19.209 Atomic orbital electron populations 1.21805 0.96021 1.01893 1.01611 1.21523 0.95821 0.96339 1.02296 1.21644 0.95921 0.97136 1.01461 1.21540 0.94933 0.95576 1.02753 1.21604 0.95309 0.97574 1.01470 1.21837 0.95497 0.92837 1.04731 1.21114 0.95191 0.94381 0.86092 0.92336 1.22146 0.95061 1.00926 1.03567 1.45870 1.70091 1.05374 1.14499 1.18727 0.75570 0.82880 0.87853 1.90661 1.52870 1.65759 1.38041 1.19829 1.06261 0.94252 0.93865 1.20843 1.09692 0.98691 0.92379 1.20930 0.98704 0.94020 0.97710 1.21406 1.10709 0.94597 0.97057 1.17962 0.90296 0.94298 0.91067 1.19883 1.25746 0.91578 1.15409 0.89811 1.26874 0.92688 1.05804 0.93306 1.69904 1.14597 1.40072 1.20556 0.85153 0.79686 0.75870 0.78999 1.17370 1.19588 1.18796 1.21445 1.03106 0.92688 0.98137 0.92075 0.93043 0.93105 0.91660 0.91628 0.92851 0.92841 0.91089 0.91158 0.93347 0.92966 0.89521 0.88493 0.90978 0.95700 0.89451 0.75170 0.84605 0.84331 0.87378 0.90357 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.60 5.93 30.59 0.18 -1.42 16 3 C -0.12 -1.95 5.21 30.59 0.16 -1.79 16 4 C -0.11 -1.59 5.21 30.59 0.16 -1.43 16 5 C -0.12 -2.28 5.10 30.60 0.16 -2.12 16 6 C -0.11 -1.89 4.75 30.59 0.15 -1.74 16 7 C 0.14 3.58 2.57 44.99 0.12 3.69 16 8 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 9 C -0.16 -3.94 9.48 71.98 0.68 -3.25 16 10 N -0.71 -22.20 4.48 -445.36 -2.00 -24.20 16 11 C 0.56 24.97 7.74 86.80 0.67 25.64 16 12 O -0.59 -31.44 16.00 -3.86 -0.06 -31.50 16 13 C -0.14 -6.66 5.87 -20.14 -0.12 -6.78 16 14 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 15 C -0.10 -3.81 10.01 22.18 0.22 -3.59 16 16 C -0.22 -10.30 9.78 22.77 0.22 -10.07 16 17 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 18 C -0.50 -27.50 9.05 23.47 0.21 -27.28 16 19 H 0.08 4.38 7.91 -2.91 -0.02 4.35 16 20 C 0.03 1.49 5.14 85.25 0.44 1.93 16 21 N -0.83 -46.96 10.96 21.82 0.24 -46.72 16 22 Si 0.98 40.33 29.60 68.60 2.03 42.36 16 23 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 26 C -0.13 -7.54 8.24 23.01 0.19 -7.35 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.41 10.48 6.62 -92.71 -0.61 9.86 16 44 H 0.14 4.03 6.38 -2.91 -0.02 4.01 16 45 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 46 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 47 H 0.29 14.95 8.30 -92.71 -0.77 14.19 16 48 H 0.10 6.15 5.74 -2.91 -0.02 6.13 16 Total: -1.00 -69.67 390.00 4.77 -64.90 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.30 Total: 36.06 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 4.25 Total: -40.90 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.76 Total: -70.92 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.06 Total: -31.50 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -69.67 4.77 -64.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051082221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds