Wall clock time and date at job start Tue Mar 31 2020 08:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47407 * 2 1 4 4 C 1.52999 * 109.47234 * 120.00498 * 2 1 3 5 5 C 1.52997 * 109.47331 * 59.99455 * 4 2 1 6 6 C 1.52995 * 109.47361 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47088 * 299.99882 * 6 5 4 8 8 N 1.46495 * 109.47003 * 179.97438 * 7 6 5 9 9 C 1.39785 * 119.99884 * 155.00597 * 8 7 6 10 10 C 1.38950 * 120.00811 * 179.97438 * 9 8 7 11 11 C 1.38013 * 119.99674 * 180.02562 * 10 9 8 12 12 C 1.38901 * 120.00276 * 0.02562 * 11 10 9 13 13 O 1.35792 * 119.99457 * 179.97438 * 12 11 10 14 14 C 1.34816 * 117.00137 * 354.45290 * 13 12 11 15 15 H 1.08010 * 119.99647 * 5.06210 * 14 13 12 16 16 C 1.38620 * 120.00540 * 185.05841 * 14 13 12 17 17 N 1.31582 * 119.99901 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47143 * 89.99606 * 18 16 14 20 20 H 1.48500 * 109.46995 * 210.00150 * 18 16 14 21 21 H 1.48507 * 109.47006 * 330.00110 * 18 16 14 22 22 C 1.38894 * 120.01424 * 0.26869 * 12 11 10 23 23 C 1.38013 * 120.00372 * 359.45418 * 22 12 11 24 24 C 1.53004 * 109.46959 * 60.00330 * 7 6 5 25 25 C 1.52998 * 109.47234 * 179.97438 * 4 2 1 26 26 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47023 * 300.00206 * 1 2 3 28 28 H 1.08998 * 109.46932 * 59.99709 * 1 2 3 29 29 H 1.09002 * 109.46931 * 240.00175 * 2 1 3 30 30 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47312 * 300.00058 * 3 2 1 32 32 H 1.09002 * 109.46932 * 60.00176 * 3 2 1 33 33 H 1.09002 * 109.46898 * 299.99697 * 4 2 1 34 34 H 1.09002 * 109.46932 * 60.00263 * 5 4 2 35 35 H 1.08999 * 109.47337 * 300.00818 * 5 4 2 36 36 H 1.08997 * 109.47290 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47167 * 60.00058 * 6 5 4 38 38 H 1.08998 * 109.47573 * 300.00479 * 7 6 5 39 39 H 0.97000 * 120.00771 * 334.99862 * 8 7 6 40 40 H 1.08004 * 120.00160 * 0.02562 * 10 9 8 41 41 H 1.07989 * 119.99834 * 179.97438 * 11 10 9 42 42 H 0.97001 * 119.99978 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99781 * 179.71132 * 22 12 11 44 44 H 1.08009 * 120.00306 * 180.27600 * 23 22 12 45 45 H 1.08995 * 109.47572 * 59.99543 * 24 7 6 46 46 H 1.08996 * 109.47029 * 180.02562 * 24 7 6 47 47 H 1.09002 * 109.46931 * 299.99677 * 25 4 2 48 48 H 1.08997 * 109.47333 * 59.99635 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0394 -2.8849 2.4986 7 6 3.5695 -2.8851 2.4991 8 7 4.0573 -3.5750 3.6958 9 6 5.3247 -4.1647 3.6948 10 6 5.7877 -4.8188 4.8299 11 6 7.0393 -5.4004 4.8288 12 6 7.8362 -5.3316 3.6932 13 8 9.0678 -5.9035 3.6924 14 6 9.5030 -6.4210 4.8587 15 1 8.8484 -6.4428 5.7175 16 6 10.7906 -6.9252 4.9558 17 7 11.5883 -6.8983 3.9096 18 14 11.3934 -7.6429 6.5716 19 1 11.0879 -9.0955 6.6127 20 1 12.8603 -7.4421 6.6858 21 1 10.7111 -6.9615 7.7010 22 6 7.3760 -4.6726 2.5604 23 6 6.1223 -4.0958 2.5591 24 6 4.0796 -1.4426 2.4993 25 6 3.5700 -0.7219 1.2488 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -0.2075 2.1392 34 1 1.8933 -2.6776 0.3591 35 1 0.4400 -2.1638 1.2491 36 1 1.6764 -3.9127 2.4984 37 1 1.6758 -2.3710 3.3884 38 1 3.9331 -3.3989 1.6093 39 1 3.5010 -3.6227 4.4890 40 1 5.1683 -4.8719 5.7130 41 1 7.3994 -5.9084 5.7111 42 1 12.4894 -7.2508 3.9777 43 1 7.9977 -4.6153 1.6791 44 1 5.7627 -3.5872 1.6767 45 1 3.7159 -0.9286 3.3890 46 1 5.1695 -1.4426 2.4992 47 1 3.9329 -1.2360 0.3588 48 1 3.9337 0.3056 1.2486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054554430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:14 Heat of formation + Delta-G solvation = -31.139382 kcal Electronic energy + Delta-G solvation = -24392.867272 eV Core-core repulsion = 21025.967960 eV Total energy + Delta-G solvation = -3366.899311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76181 -38.77979 -37.06558 -35.42155 -32.98084 -31.94756 -31.10848 -30.17613 -28.86242 -27.43412 -26.63514 -25.02067 -23.04154 -22.61262 -21.84329 -20.68171 -20.01354 -19.94473 -17.77832 -17.06127 -16.40377 -15.85669 -15.30562 -14.63925 -14.43635 -14.37797 -14.12368 -13.92168 -13.77974 -13.54679 -13.39506 -13.18874 -12.66265 -12.59975 -12.50347 -12.38378 -12.21351 -12.05144 -11.63731 -11.50439 -11.36906 -11.34459 -11.22876 -11.15977 -10.97371 -10.85727 -10.62782 -10.47310 -10.30659 -10.24276 -10.06505 -9.19991 -9.10405 -8.39977 -8.12656 -6.34776 -6.29077 -3.86531 2.24472 2.62122 3.20206 3.20948 3.25498 3.82699 4.08466 4.42003 4.45866 4.57518 4.71315 4.73230 4.94667 5.08407 5.13178 5.19175 5.23313 5.29781 5.32965 5.37781 5.39145 5.45977 5.48837 5.56484 5.58325 5.69288 5.70711 5.72354 5.81114 5.81727 5.89978 5.95557 5.98463 6.02222 6.13032 6.16098 6.26159 6.27914 6.30527 6.40904 6.60437 6.90908 6.96750 7.18710 7.35904 7.49754 7.69267 8.04899 8.15177 8.31384 9.16551 9.91772 10.89376 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.002361 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.382904 B =11857.940084 C =12229.578777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.082 4.082 5 C -0.112 4.112 6 C -0.125 4.125 7 C 0.161 3.839 8 N -0.756 5.756 9 C 0.127 3.873 10 C -0.144 4.144 11 C -0.190 4.190 12 C 0.112 3.888 13 O -0.189 6.189 14 C -0.386 4.386 15 H 0.088 0.912 16 C 0.035 3.965 17 N -0.870 5.870 18 Si 0.937 3.063 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.114 4.114 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.388 0.612 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.267 0.733 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.330 12.909 -5.092 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.100 4.100 5 C -0.150 4.150 6 C -0.163 4.163 7 C 0.055 3.945 8 N -0.390 5.390 9 C 0.029 3.971 10 C -0.166 4.166 11 C -0.210 4.210 12 C 0.060 3.940 13 O -0.095 6.095 14 C -0.462 4.462 15 H 0.105 0.895 16 C -0.168 4.168 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.170 4.170 23 C -0.169 4.169 24 C -0.174 4.174 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.222 0.778 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.908 12.860 -5.494 25.153 hybrid contribution 0.088 -0.360 1.242 1.296 sum -20.819 12.500 -4.252 24.653 Atomic orbital electron populations 1.21899 0.95508 1.01780 1.01464 1.21151 0.95508 0.96164 0.98331 1.21900 1.01397 0.95977 1.01429 1.21228 0.95565 0.95510 0.97727 1.21591 1.00312 0.95171 0.97876 1.21776 0.95196 1.00758 0.98540 1.20694 0.92694 0.91781 0.89332 1.44311 1.16282 1.63340 1.15077 1.17401 0.86426 0.98610 0.94649 1.20235 0.96836 1.02974 0.96591 1.20984 0.94851 1.05528 0.99598 1.19234 0.87330 0.93908 0.93552 1.83985 1.26100 1.65066 1.34301 1.21228 0.97929 1.38823 0.88267 0.89501 1.25211 0.94978 0.97655 0.98920 1.70051 1.07532 1.44006 1.29053 0.85770 0.78271 0.79167 0.80521 1.20088 1.20431 1.19393 1.20032 0.96453 1.02683 0.97844 1.20207 0.94509 1.05252 0.96903 1.22078 1.01436 0.96213 0.97700 1.21640 0.94733 1.00534 0.98322 0.92387 0.92856 0.93021 0.91260 0.92237 0.93028 0.92853 0.91336 0.91801 0.91602 0.91595 0.91905 0.90932 0.77838 0.87730 0.85587 0.92348 0.86613 0.87092 0.92180 0.91370 0.91941 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 2 C -0.09 -0.64 2.51 -90.62 -0.23 -0.87 16 3 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 4 C -0.08 -0.62 1.78 -90.62 -0.16 -0.78 16 5 C -0.11 -0.86 4.85 -26.74 -0.13 -0.99 16 6 C -0.12 -1.12 5.39 -26.73 -0.14 -1.26 16 7 C 0.16 1.82 2.15 -67.93 -0.15 1.67 16 8 N -0.76 -10.18 5.25 -52.12 -0.27 -10.46 16 9 C 0.13 2.22 6.64 -83.70 -0.56 1.66 16 10 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 11 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 12 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 13 O -0.19 -5.57 9.76 -0.04 0.00 -5.57 16 14 C -0.39 -11.11 9.48 30.87 0.29 -10.81 16 15 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 16 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 17 N -0.87 -26.29 13.67 55.48 0.76 -25.53 16 18 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.15 -3.27 9.98 -39.42 -0.39 -3.66 16 23 C -0.15 -2.70 8.84 -39.40 -0.35 -3.04 16 24 C -0.14 -1.46 5.44 -26.70 -0.15 -1.61 16 25 C -0.11 -1.01 4.85 -26.70 -0.13 -1.14 16 26 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.90 6.48 -51.93 -0.34 0.57 16 39 H 0.39 4.64 8.61 -40.82 -0.35 4.29 16 40 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 44 H 0.11 1.77 6.10 -52.48 -0.32 1.45 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -30.94 369.77 -9.45 -40.38 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.94 Total: 5.84 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.54 Total: -26.38 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.48 Total: -35.98 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.94 -9.45 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054554430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.243 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds