Wall clock time and date at job start Tue Mar 31 2020 08:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47407 * 2 1 4 4 C 1.52999 * 109.47234 * 120.00498 * 2 1 3 5 5 C 1.52997 * 109.47331 * 59.99455 * 4 2 1 6 6 C 1.52995 * 109.47361 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47088 * 299.99882 * 6 5 4 8 8 N 1.46495 * 109.47003 * 179.97438 * 7 6 5 9 9 C 1.39785 * 119.99884 * 155.00597 * 8 7 6 10 10 C 1.38950 * 120.00811 * 179.97438 * 9 8 7 11 11 C 1.38013 * 119.99674 * 180.02562 * 10 9 8 12 12 C 1.38901 * 120.00276 * 0.02562 * 11 10 9 13 13 O 1.35792 * 119.99457 * 179.97438 * 12 11 10 14 14 C 1.34816 * 117.00137 * 354.45290 * 13 12 11 15 15 H 1.08010 * 119.99647 * 5.06210 * 14 13 12 16 16 C 1.38620 * 120.00540 * 185.05841 * 14 13 12 17 17 N 1.31582 * 119.99901 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47143 * 89.99606 * 18 16 14 20 20 H 1.48500 * 109.46995 * 210.00150 * 18 16 14 21 21 H 1.48507 * 109.47006 * 330.00110 * 18 16 14 22 22 C 1.38894 * 120.01424 * 0.26869 * 12 11 10 23 23 C 1.38013 * 120.00372 * 359.45418 * 22 12 11 24 24 C 1.53004 * 109.46959 * 60.00330 * 7 6 5 25 25 C 1.52998 * 109.47234 * 179.97438 * 4 2 1 26 26 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47023 * 300.00206 * 1 2 3 28 28 H 1.08998 * 109.46932 * 59.99709 * 1 2 3 29 29 H 1.09002 * 109.46931 * 240.00175 * 2 1 3 30 30 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47312 * 300.00058 * 3 2 1 32 32 H 1.09002 * 109.46932 * 60.00176 * 3 2 1 33 33 H 1.09002 * 109.46898 * 299.99697 * 4 2 1 34 34 H 1.09002 * 109.46932 * 60.00263 * 5 4 2 35 35 H 1.08999 * 109.47337 * 300.00818 * 5 4 2 36 36 H 1.08997 * 109.47290 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47167 * 60.00058 * 6 5 4 38 38 H 1.08998 * 109.47573 * 300.00479 * 7 6 5 39 39 H 0.97000 * 120.00771 * 334.99862 * 8 7 6 40 40 H 1.08004 * 120.00160 * 0.02562 * 10 9 8 41 41 H 1.07989 * 119.99834 * 179.97438 * 11 10 9 42 42 H 0.97001 * 119.99978 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99781 * 179.71132 * 22 12 11 44 44 H 1.08009 * 120.00306 * 180.27600 * 23 22 12 45 45 H 1.08995 * 109.47572 * 59.99543 * 24 7 6 46 46 H 1.08996 * 109.47029 * 180.02562 * 24 7 6 47 47 H 1.09002 * 109.46931 * 299.99677 * 25 4 2 48 48 H 1.08997 * 109.47333 * 59.99635 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0394 -2.8849 2.4986 7 6 3.5695 -2.8851 2.4991 8 7 4.0573 -3.5750 3.6958 9 6 5.3247 -4.1647 3.6948 10 6 5.7877 -4.8188 4.8299 11 6 7.0393 -5.4004 4.8288 12 6 7.8362 -5.3316 3.6932 13 8 9.0678 -5.9035 3.6924 14 6 9.5030 -6.4210 4.8587 15 1 8.8484 -6.4428 5.7175 16 6 10.7906 -6.9252 4.9558 17 7 11.5883 -6.8983 3.9096 18 14 11.3934 -7.6429 6.5716 19 1 11.0879 -9.0955 6.6127 20 1 12.8603 -7.4421 6.6858 21 1 10.7111 -6.9615 7.7010 22 6 7.3760 -4.6726 2.5604 23 6 6.1223 -4.0958 2.5591 24 6 4.0796 -1.4426 2.4993 25 6 3.5700 -0.7219 1.2488 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -0.2075 2.1392 34 1 1.8933 -2.6776 0.3591 35 1 0.4400 -2.1638 1.2491 36 1 1.6764 -3.9127 2.4984 37 1 1.6758 -2.3710 3.3884 38 1 3.9331 -3.3989 1.6093 39 1 3.5010 -3.6227 4.4890 40 1 5.1683 -4.8719 5.7130 41 1 7.3994 -5.9084 5.7111 42 1 12.4894 -7.2508 3.9777 43 1 7.9977 -4.6153 1.6791 44 1 5.7627 -3.5872 1.6767 45 1 3.7159 -0.9286 3.3890 46 1 5.1695 -1.4426 2.4992 47 1 3.9329 -1.2360 0.3588 48 1 3.9337 0.3056 1.2486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054554430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:13 Heat of formation + Delta-G solvation = -47.772128 kcal Electronic energy + Delta-G solvation = -24393.588522 eV Core-core repulsion = 21025.967960 eV Total energy + Delta-G solvation = -3367.620561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90936 -40.16701 -38.55365 -36.53532 -34.38702 -33.70497 -31.93151 -31.70648 -29.99117 -28.13557 -27.93557 -26.89596 -24.20057 -23.49247 -23.07371 -22.18278 -20.95147 -20.56844 -19.62820 -18.84961 -17.73846 -17.04392 -16.40503 -16.14382 -15.65426 -15.41324 -15.31947 -15.14758 -15.05214 -14.66088 -14.47161 -14.31529 -14.06031 -14.01163 -13.49747 -13.44938 -13.26426 -13.14234 -12.99989 -12.75777 -12.50311 -12.43640 -12.29285 -12.12522 -12.03873 -11.95844 -11.94297 -11.52165 -11.25245 -11.11841 -11.00774 -10.88788 -10.72221 -10.11136 -9.76807 -8.38896 -7.90803 -6.02426 0.59111 0.94537 1.36507 1.46538 1.54088 2.22900 2.66128 2.91929 3.25928 3.67743 3.75982 3.79021 3.89550 4.08302 4.15958 4.17797 4.23422 4.39553 4.43873 4.48723 4.55481 4.57815 4.64597 4.70597 4.74480 4.76526 4.87777 4.89397 4.96233 5.07330 5.08989 5.12554 5.15235 5.18199 5.20470 5.27916 5.30466 5.31192 5.39737 5.44066 5.46008 5.53275 5.57168 5.62454 5.69917 5.79392 6.01200 6.11995 6.65766 7.06043 7.09930 7.94196 8.85718 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.002361 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.382904 B =11857.940084 C =12229.578777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.076 4.076 5 C -0.109 4.109 6 C -0.117 4.117 7 C 0.156 3.844 8 N -0.742 5.742 9 C 0.156 3.844 10 C -0.147 4.147 11 C -0.193 4.193 12 C 0.061 3.939 13 O -0.243 6.243 14 C -0.405 4.405 15 H 0.098 0.902 16 C -0.030 4.030 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.156 4.156 23 C -0.146 4.146 24 C -0.130 4.130 25 C -0.111 4.111 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.402 0.598 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.269 0.731 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.676 14.035 -4.123 28.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.094 4.094 5 C -0.147 4.147 6 C -0.155 4.155 7 C 0.051 3.949 8 N -0.375 5.375 9 C 0.055 3.945 10 C -0.169 4.169 11 C -0.213 4.213 12 C 0.011 3.989 13 O -0.151 6.151 14 C -0.482 4.482 15 H 0.115 0.885 16 C -0.226 4.226 17 N -0.567 5.567 18 Si 0.837 3.163 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.176 4.176 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.237 0.763 40 H 0.157 0.843 41 H 0.136 0.864 42 H 0.078 0.922 43 H 0.129 0.871 44 H 0.156 0.844 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.355 14.031 -4.530 28.470 hybrid contribution 0.789 -0.504 0.823 1.247 sum -23.565 13.527 -3.707 27.423 Atomic orbital electron populations 1.21884 0.94774 1.02094 1.01746 1.21126 0.96085 0.96047 0.97737 1.21900 1.01108 0.95989 1.01731 1.21172 0.94389 0.95681 0.98205 1.21586 1.01161 0.94826 0.97084 1.21717 0.92843 1.01269 0.99665 1.20901 0.94592 0.91577 0.87827 1.44442 1.14596 1.61929 1.16524 1.17526 0.87386 0.96096 0.93490 1.20503 0.95822 1.02300 0.98321 1.21053 0.96005 1.05722 0.98481 1.19720 0.86997 0.96356 0.95789 1.83933 1.28577 1.67563 1.35046 1.21751 0.98702 1.38940 0.88783 0.88471 1.26545 0.94806 0.97992 1.03281 1.70209 1.08158 1.46383 1.31950 0.84604 0.77726 0.78572 0.75395 1.18912 1.19759 1.17756 1.20227 0.97764 1.02596 0.96976 1.20428 0.93258 1.04683 0.98412 1.22000 0.99957 0.96060 0.98922 1.21611 0.95790 1.00396 0.97088 0.92039 0.92672 0.92709 0.91587 0.92693 0.92608 0.92723 0.91163 0.92037 0.90164 0.91447 0.90886 0.91775 0.76301 0.84316 0.86362 0.92173 0.87088 0.84402 0.91843 0.93651 0.92223 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.84 71.98 0.64 -0.79 16 2 C -0.09 -1.03 2.51 -10.80 -0.03 -1.06 16 3 C -0.15 -1.69 8.84 71.98 0.64 -1.06 16 4 C -0.08 -0.94 1.78 -10.80 -0.02 -0.96 16 5 C -0.11 -1.31 4.85 30.59 0.15 -1.17 16 6 C -0.12 -1.66 5.39 30.59 0.16 -1.50 16 7 C 0.16 3.05 2.15 44.99 0.10 3.14 16 8 N -0.74 -17.44 5.25 -318.79 -1.67 -19.11 16 9 C 0.16 5.08 6.64 38.21 0.25 5.33 16 10 C -0.15 -5.25 9.89 22.39 0.22 -5.03 16 11 C -0.19 -8.72 9.16 22.38 0.20 -8.52 16 12 C 0.06 3.17 6.65 22.59 0.15 3.32 16 13 O -0.24 -15.24 9.76 -23.06 -0.22 -15.46 16 14 C -0.41 -24.47 9.48 67.91 0.64 -23.82 16 15 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 16 C -0.03 -1.78 5.49 84.82 0.47 -1.32 16 17 N -0.93 -58.91 13.67 21.61 0.30 -58.62 16 18 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 22 C -0.16 -6.98 9.98 22.37 0.22 -6.76 16 23 C -0.15 -5.20 8.84 22.39 0.20 -5.00 16 24 C -0.13 -2.50 5.44 30.61 0.17 -2.33 16 25 C -0.11 -1.71 4.85 30.61 0.15 -1.56 16 26 H 0.06 0.55 6.43 -2.39 -0.02 0.54 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.66 6.43 -2.39 -0.02 0.65 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.80 6.43 -2.39 -0.02 0.78 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.41 6.48 -2.39 -0.02 1.40 16 39 H 0.40 7.87 8.61 -92.71 -0.80 7.07 16 40 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.12 5.42 5.63 -2.92 -0.02 5.41 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.14 4.14 6.10 -2.91 -0.02 4.13 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 1.09 7.70 -2.39 -0.02 1.07 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 Total: -1.00 -71.52 369.77 4.88 -66.63 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.15 Total: 29.17 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 4.31 Total: -49.07 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.38 Total: -77.73 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.22 Total: -15.46 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.52 4.88 -66.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054554430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.861 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds