Wall clock time and date at job start Tue Mar 31 2020 08:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47485 * 2 1 4 4 C 1.53008 * 109.46739 * 239.99805 * 2 1 3 5 5 C 1.53004 * 109.47218 * 120.00610 * 2 1 3 6 6 C 1.52992 * 109.47517 * 43.21397 * 5 2 1 7 7 C 1.52999 * 109.46940 * 43.86804 * 6 5 2 8 8 C 1.53006 * 109.47174 * 283.87092 * 6 5 2 9 9 N 1.46492 * 109.47459 * 163.87176 * 6 5 2 10 10 C 1.34777 * 120.00407 * 180.02562 * 9 6 5 11 11 O 1.21585 * 119.99790 * 359.97438 * 10 9 6 12 12 C 1.47643 * 120.00084 * 179.97438 * 10 9 6 13 13 C 1.40014 * 119.89199 * 180.02562 * 12 10 9 14 14 C 1.36316 * 120.10329 * 180.25392 * 13 12 10 15 15 C 1.40895 * 119.89448 * 359.52027 * 14 13 12 16 16 C 1.41102 * 120.10602 * 180.23161 * 15 14 13 17 17 H 1.08001 * 120.00191 * 214.95404 * 16 15 14 18 18 C 1.40229 * 120.00346 * 34.95729 * 16 15 14 19 19 N 1.30651 * 119.99420 * 5.21420 * 18 16 15 20 20 Si 1.86789 * 120.00327 * 185.21785 * 18 16 15 21 21 H 1.48500 * 109.47544 * 89.99724 * 20 18 16 22 22 H 1.48508 * 109.47225 * 209.99753 * 20 18 16 23 23 H 1.48499 * 109.47322 * 329.99535 * 20 18 16 24 24 C 1.40893 * 119.78815 * 0.49553 * 15 14 13 25 25 C 1.36310 * 119.89401 * 359.73611 * 24 15 14 26 26 H 1.09006 * 109.46676 * 297.34706 * 1 2 3 27 27 H 1.08993 * 109.47520 * 57.34194 * 1 2 3 28 28 H 1.09007 * 109.47223 * 177.34956 * 1 2 3 29 29 H 1.09000 * 109.47413 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46670 * 300.00294 * 3 2 1 31 31 H 1.09002 * 109.46964 * 60.00295 * 3 2 1 32 32 H 1.08995 * 109.47175 * 309.05635 * 4 2 1 33 33 H 1.09004 * 109.46743 * 69.05910 * 4 2 1 34 34 H 1.09003 * 109.47171 * 189.05811 * 4 2 1 35 35 H 1.09004 * 109.46390 * 283.20933 * 5 2 1 36 36 H 1.09001 * 109.46925 * 163.21987 * 5 2 1 37 37 H 1.09003 * 109.46815 * 177.41540 * 7 6 5 38 38 H 1.09001 * 109.47445 * 297.41085 * 7 6 5 39 39 H 1.08999 * 109.47516 * 57.41466 * 7 6 5 40 40 H 1.08997 * 109.46677 * 309.02044 * 8 6 5 41 41 H 1.09004 * 109.47203 * 69.01915 * 8 6 5 42 42 H 1.08998 * 109.47490 * 189.02077 * 8 6 5 43 43 H 0.97001 * 120.00055 * 359.97438 * 9 6 5 44 44 H 1.08000 * 119.95106 * 359.97121 * 13 12 10 45 45 H 1.08001 * 120.05808 * 179.71766 * 14 13 12 46 46 H 0.97009 * 119.99629 * 180.02562 * 19 18 16 47 47 H 1.07996 * 120.04851 * 179.71123 * 24 15 14 48 48 H 1.07998 * 119.95135 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.2189 -1.9924 1.4752 7 6 1.0255 -2.7183 0.1423 8 6 -0.1468 -1.6208 2.0564 9 7 1.9254 -2.8702 2.4113 10 6 1.3873 -4.0555 2.7607 11 8 0.3151 -4.3959 2.2993 12 6 2.0996 -4.9404 3.7038 13 6 1.5387 -6.1714 4.0648 14 6 2.1902 -6.9895 4.9391 15 6 3.4348 -6.5990 5.4719 16 6 4.1153 -7.4446 6.3735 17 1 4.6941 -7.0196 7.1803 18 6 4.0404 -8.8366 6.2220 19 7 3.4260 -9.3491 5.1891 20 14 4.8186 -9.9581 7.4970 21 1 3.8246 -10.2691 8.5556 22 1 5.2584 -11.2181 6.8455 23 1 5.9916 -9.2790 8.1036 24 6 3.9949 -5.3591 5.1058 25 6 3.3337 -4.5457 4.2345 26 1 -0.3633 0.4721 0.9129 27 1 -0.3634 0.5545 -0.8651 28 1 -0.3634 -1.0266 -0.0475 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.5505 -1.6916 -1.3338 33 1 1.8146 -0.1226 -2.1319 34 1 3.1178 -0.8636 -1.1722 35 1 1.9397 -0.0653 2.1139 36 1 3.0887 -0.9856 1.1134 37 1 0.4801 -3.6470 0.3102 38 1 0.4597 -2.0827 -0.5389 39 1 1.9989 -2.9424 -0.2940 40 1 -0.0093 -0.9678 2.9182 41 1 -0.7355 -1.1034 1.2987 42 1 -0.6685 -2.5263 2.3661 43 1 2.7809 -2.5988 2.7792 44 1 0.5862 -6.4713 3.6534 45 1 1.7548 -7.9369 5.2206 46 1 3.3738 -10.3121 5.0845 47 1 4.9464 -5.0536 5.5153 48 1 3.7624 -3.5953 3.9530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:41 Heat of formation + Delta-G solvation = 3.778790 kcal Electronic energy + Delta-G solvation = -25234.352507 eV Core-core repulsion = 21868.967361 eV Total energy + Delta-G solvation = -3365.385146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47925 -38.51524 -37.03069 -34.43760 -33.77695 -31.46776 -29.91250 -29.38376 -28.89319 -28.12829 -26.42371 -25.76173 -25.70148 -22.28902 -21.10636 -20.16586 -19.22355 -18.74212 -17.45745 -16.89309 -15.80038 -15.30172 -15.17857 -14.76685 -14.51698 -14.11318 -13.95719 -13.93232 -13.50135 -13.16968 -13.04368 -12.84705 -12.56300 -12.26043 -12.22483 -11.97718 -11.80547 -11.72666 -11.48837 -11.42283 -11.26211 -11.16590 -10.93546 -10.85668 -10.72414 -10.58367 -10.54955 -10.31333 -10.02095 -9.84294 -9.50063 -9.37878 -8.66431 -8.51904 -7.69588 -7.42385 -6.87878 -4.58747 2.24043 2.95056 2.99480 3.01370 3.03997 3.76806 3.81018 3.93979 4.62883 4.63813 4.68280 4.69342 5.06845 5.17313 5.29535 5.41327 5.45168 5.47933 5.55350 5.62785 5.68958 5.72119 5.75120 5.79959 5.83113 5.94737 5.97972 6.00135 6.08714 6.12081 6.18501 6.20328 6.28749 6.29740 6.32371 6.64099 6.65504 6.84231 6.89871 7.05691 7.09716 7.16918 7.48012 7.60310 7.80646 7.90917 8.10201 8.30754 8.47340 8.68426 8.77446 9.12611 10.05697 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.002771 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.946734 B =10103.537128 C =10382.762902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.178 4.178 5 C -0.112 4.112 6 C 0.183 3.817 7 C -0.187 4.187 8 C -0.198 4.198 9 N -0.736 5.736 10 C 0.574 3.426 11 O -0.566 6.566 12 C -0.271 4.271 13 C -0.041 4.041 14 C -0.168 4.168 15 C 0.131 3.869 16 C -0.455 4.455 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.789 5.789 20 Si 0.917 3.083 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.226 4.226 25 C -0.057 4.057 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.393 0.607 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.284 0.716 47 H 0.098 0.902 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 14.458 -7.933 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.235 4.235 5 C -0.150 4.150 6 C 0.097 3.903 7 C -0.244 4.244 8 C -0.256 4.256 9 N -0.388 5.388 10 C 0.368 3.632 11 O -0.448 6.448 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.188 4.188 15 C 0.128 3.872 16 C -0.484 4.484 17 H 0.100 0.900 18 C -0.148 4.148 19 N -0.414 5.414 20 Si 0.741 3.259 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.245 4.245 25 C -0.076 4.076 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.228 0.772 44 H 0.119 0.881 45 H 0.138 0.862 46 H 0.095 0.905 47 H 0.116 0.884 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.486 13.996 -8.375 16.498 hybrid contribution 1.059 -0.376 0.744 1.347 sum -1.427 13.620 -7.632 15.677 Atomic orbital electron populations 1.22836 0.95086 1.03347 1.01378 1.20366 0.95658 0.94981 0.94948 1.21883 1.00892 0.95432 1.01518 1.22795 1.01553 1.02768 0.96377 1.21981 0.99441 0.95778 0.97835 1.20071 0.92205 0.88734 0.89324 1.23067 1.02217 1.02629 0.96450 1.23124 0.97452 1.03292 1.01689 1.46096 1.24589 1.19775 1.48339 1.18499 0.84482 0.80102 0.80088 1.90569 1.22788 1.74691 1.56727 1.19066 0.99770 0.98830 1.09864 1.20527 0.97944 0.92287 0.95278 1.21060 0.95489 1.00432 1.01786 1.17807 0.89921 0.90401 0.89072 1.19735 1.26420 0.90642 1.11605 0.89998 1.26022 0.94029 0.99169 0.95532 1.69705 1.32285 1.14367 1.24994 0.86164 0.80118 0.79023 0.80597 1.19152 1.20087 1.18499 1.20795 1.00550 0.98553 1.04646 1.20394 0.93793 0.96975 0.96422 0.91993 0.93339 0.89192 0.92799 0.92801 0.92772 0.88906 0.93348 0.92893 0.91507 0.91504 0.90482 0.89670 0.92529 0.93443 0.89086 0.90435 0.77187 0.88078 0.86229 0.90467 0.88423 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 6.28 37.16 0.23 -1.29 16 2 C -0.06 -0.54 0.77 -154.51 -0.12 -0.66 16 3 C -0.14 -1.13 8.39 37.16 0.31 -0.81 16 4 C -0.18 -1.63 7.60 37.16 0.28 -1.34 16 5 C -0.11 -1.20 4.04 -26.73 -0.11 -1.31 16 6 C 0.18 2.46 0.80 -131.82 -0.11 2.36 16 7 C -0.19 -2.54 6.26 37.16 0.23 -2.30 16 8 C -0.20 -2.73 7.59 37.16 0.28 -2.45 16 9 N -0.74 -11.91 5.05 -48.61 -0.25 -12.16 16 10 C 0.57 11.83 7.15 -12.42 -0.09 11.74 16 11 O -0.57 -12.81 12.48 5.29 0.07 -12.75 16 12 C -0.27 -6.12 5.89 -104.73 -0.62 -6.74 16 13 C -0.04 -1.00 9.52 -39.61 -0.38 -1.38 16 14 C -0.17 -4.32 8.56 -39.27 -0.34 -4.66 16 15 C 0.13 3.36 5.50 -106.80 -0.59 2.77 16 16 C -0.45 -11.49 9.03 -37.75 -0.34 -11.83 16 17 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 18 C 0.07 1.72 5.31 -17.31 -0.09 1.63 16 19 N -0.79 -19.82 10.98 55.56 0.61 -19.21 16 20 Si 0.92 17.93 29.56 -169.99 -5.03 12.91 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.23 -5.24 9.73 -39.27 -0.38 -5.62 16 25 C -0.06 -1.20 9.47 -39.61 -0.38 -1.58 16 26 H 0.06 0.55 6.95 -51.93 -0.36 0.19 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.88 3.12 -51.92 -0.16 0.72 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.90 3.55 -51.93 -0.18 0.71 16 33 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.05 0.49 7.96 -51.93 -0.41 0.07 16 35 H 0.07 0.69 7.80 -51.93 -0.41 0.29 16 36 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 37 H 0.08 1.31 6.10 -51.93 -0.32 0.99 16 38 H 0.09 0.95 3.12 -51.93 -0.16 0.79 16 39 H 0.06 0.75 7.01 -51.93 -0.36 0.39 16 40 H 0.05 0.63 7.97 -51.93 -0.41 0.21 16 41 H 0.09 1.03 3.49 -51.93 -0.18 0.85 16 42 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 43 H 0.39 5.72 6.46 -40.82 -0.26 5.45 16 44 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 45 H 0.12 3.16 6.50 -52.49 -0.34 2.82 16 46 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 47 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 48 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -27.74 354.06 -8.55 -36.29 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.10 Total: 13.05 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.19 Total: -23.47 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.36 Total: -31.36 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.74 -8.55 -36.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.071 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds