Wall clock time and date at job start Tue Mar 31 2020 08:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47485 * 2 1 4 4 C 1.53008 * 109.46739 * 239.99805 * 2 1 3 5 5 C 1.53004 * 109.47218 * 120.00610 * 2 1 3 6 6 C 1.52992 * 109.47517 * 43.21397 * 5 2 1 7 7 C 1.52999 * 109.46940 * 43.86804 * 6 5 2 8 8 C 1.53006 * 109.47174 * 283.87092 * 6 5 2 9 9 N 1.46492 * 109.47459 * 163.87176 * 6 5 2 10 10 C 1.34777 * 120.00407 * 180.02562 * 9 6 5 11 11 O 1.21585 * 119.99790 * 359.97438 * 10 9 6 12 12 C 1.47643 * 120.00084 * 179.97438 * 10 9 6 13 13 C 1.40014 * 119.89199 * 180.02562 * 12 10 9 14 14 C 1.36316 * 120.10329 * 180.25392 * 13 12 10 15 15 C 1.40895 * 119.89448 * 359.52027 * 14 13 12 16 16 C 1.41102 * 120.10602 * 180.23161 * 15 14 13 17 17 H 1.08001 * 120.00191 * 214.95404 * 16 15 14 18 18 C 1.40229 * 120.00346 * 34.95729 * 16 15 14 19 19 N 1.30651 * 119.99420 * 5.21420 * 18 16 15 20 20 Si 1.86789 * 120.00327 * 185.21785 * 18 16 15 21 21 H 1.48500 * 109.47544 * 89.99724 * 20 18 16 22 22 H 1.48508 * 109.47225 * 209.99753 * 20 18 16 23 23 H 1.48499 * 109.47322 * 329.99535 * 20 18 16 24 24 C 1.40893 * 119.78815 * 0.49553 * 15 14 13 25 25 C 1.36310 * 119.89401 * 359.73611 * 24 15 14 26 26 H 1.09006 * 109.46676 * 297.34706 * 1 2 3 27 27 H 1.08993 * 109.47520 * 57.34194 * 1 2 3 28 28 H 1.09007 * 109.47223 * 177.34956 * 1 2 3 29 29 H 1.09000 * 109.47413 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46670 * 300.00294 * 3 2 1 31 31 H 1.09002 * 109.46964 * 60.00295 * 3 2 1 32 32 H 1.08995 * 109.47175 * 309.05635 * 4 2 1 33 33 H 1.09004 * 109.46743 * 69.05910 * 4 2 1 34 34 H 1.09003 * 109.47171 * 189.05811 * 4 2 1 35 35 H 1.09004 * 109.46390 * 283.20933 * 5 2 1 36 36 H 1.09001 * 109.46925 * 163.21987 * 5 2 1 37 37 H 1.09003 * 109.46815 * 177.41540 * 7 6 5 38 38 H 1.09001 * 109.47445 * 297.41085 * 7 6 5 39 39 H 1.08999 * 109.47516 * 57.41466 * 7 6 5 40 40 H 1.08997 * 109.46677 * 309.02044 * 8 6 5 41 41 H 1.09004 * 109.47203 * 69.01915 * 8 6 5 42 42 H 1.08998 * 109.47490 * 189.02077 * 8 6 5 43 43 H 0.97001 * 120.00055 * 359.97438 * 9 6 5 44 44 H 1.08000 * 119.95106 * 359.97121 * 13 12 10 45 45 H 1.08001 * 120.05808 * 179.71766 * 14 13 12 46 46 H 0.97009 * 119.99629 * 180.02562 * 19 18 16 47 47 H 1.07996 * 120.04851 * 179.71123 * 24 15 14 48 48 H 1.07998 * 119.95135 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.2189 -1.9924 1.4752 7 6 1.0255 -2.7183 0.1423 8 6 -0.1468 -1.6208 2.0564 9 7 1.9254 -2.8702 2.4113 10 6 1.3873 -4.0555 2.7607 11 8 0.3151 -4.3959 2.2993 12 6 2.0996 -4.9404 3.7038 13 6 1.5387 -6.1714 4.0648 14 6 2.1902 -6.9895 4.9391 15 6 3.4348 -6.5990 5.4719 16 6 4.1153 -7.4446 6.3735 17 1 4.6941 -7.0196 7.1803 18 6 4.0404 -8.8366 6.2220 19 7 3.4260 -9.3491 5.1891 20 14 4.8186 -9.9581 7.4970 21 1 3.8246 -10.2691 8.5556 22 1 5.2584 -11.2181 6.8455 23 1 5.9916 -9.2790 8.1036 24 6 3.9949 -5.3591 5.1058 25 6 3.3337 -4.5457 4.2345 26 1 -0.3633 0.4721 0.9129 27 1 -0.3634 0.5545 -0.8651 28 1 -0.3634 -1.0266 -0.0475 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.5505 -1.6916 -1.3338 33 1 1.8146 -0.1226 -2.1319 34 1 3.1178 -0.8636 -1.1722 35 1 1.9397 -0.0653 2.1139 36 1 3.0887 -0.9856 1.1134 37 1 0.4801 -3.6470 0.3102 38 1 0.4597 -2.0827 -0.5389 39 1 1.9989 -2.9424 -0.2940 40 1 -0.0093 -0.9678 2.9182 41 1 -0.7355 -1.1034 1.2987 42 1 -0.6685 -2.5263 2.3661 43 1 2.7809 -2.5988 2.7792 44 1 0.5862 -6.4713 3.6534 45 1 1.7548 -7.9369 5.2206 46 1 3.3738 -10.3121 5.0845 47 1 4.9464 -5.0536 5.5153 48 1 3.7624 -3.5953 3.9530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:40 Heat of formation + Delta-G solvation = -10.144139 kcal Electronic energy + Delta-G solvation = -25234.956251 eV Core-core repulsion = 21868.967361 eV Total energy + Delta-G solvation = -3365.988889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65500 -39.97351 -38.70869 -35.68183 -35.59885 -32.85000 -31.72550 -31.06904 -29.78831 -29.06292 -27.59874 -27.07816 -26.67206 -23.97230 -22.89287 -21.69015 -20.47559 -19.77627 -19.29379 -18.37572 -17.16815 -16.83020 -16.19022 -16.11947 -15.72569 -15.55529 -15.25510 -15.08706 -14.95530 -14.69384 -14.33358 -14.08715 -13.96461 -13.75848 -13.48700 -13.27892 -12.97357 -12.87109 -12.86111 -12.60419 -12.52773 -12.32885 -12.28719 -12.13450 -11.84184 -11.71416 -11.53050 -11.48363 -11.37151 -11.22512 -11.15558 -10.93507 -10.13391 -9.93126 -9.57461 -9.28709 -8.68500 -6.50239 0.44036 1.11794 1.38944 1.42731 1.53207 2.16026 2.22628 2.42551 2.84325 3.65724 3.74308 3.90067 3.94546 4.11567 4.21484 4.26932 4.31855 4.37972 4.40550 4.64969 4.71256 4.73712 4.83879 4.86666 4.91398 4.95360 4.97319 4.97817 5.04073 5.06651 5.11604 5.16749 5.19166 5.19397 5.25435 5.29105 5.41836 5.47656 5.50240 5.58588 5.60761 5.66887 5.76524 5.83247 5.97140 6.02329 6.22360 6.57796 6.80348 6.82019 6.90099 7.54469 8.27623 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.036123 B = 0.002771 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.946734 B =10103.537128 C =10382.762902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.179 4.179 5 C -0.106 4.106 6 C 0.177 3.823 7 C -0.182 4.182 8 C -0.196 4.196 9 N -0.719 5.719 10 C 0.573 3.427 11 O -0.591 6.591 12 C -0.278 4.278 13 C -0.055 4.055 14 C -0.188 4.188 15 C 0.103 3.897 16 C -0.485 4.485 17 H 0.089 0.911 18 C 0.029 3.971 19 N -0.826 5.826 20 Si 0.992 3.008 21 H -0.262 1.262 22 H -0.270 1.270 23 H -0.253 1.253 24 C -0.235 4.235 25 C -0.046 4.046 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.117 0.883 42 H 0.038 0.962 43 H 0.404 0.596 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.290 0.710 47 H 0.117 0.883 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 16.972 -8.374 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.057 4.057 3 C -0.195 4.195 4 C -0.235 4.235 5 C -0.144 4.144 6 C 0.092 3.908 7 C -0.239 4.239 8 C -0.253 4.253 9 N -0.371 5.371 10 C 0.365 3.635 11 O -0.474 6.474 12 C -0.282 4.282 13 C -0.074 4.074 14 C -0.207 4.207 15 C 0.100 3.900 16 C -0.514 4.514 17 H 0.107 0.893 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.812 3.188 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.254 4.254 25 C -0.064 4.064 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.057 0.943 43 H 0.240 0.760 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.135 0.865 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.104 16.555 -8.829 18.794 hybrid contribution 0.554 -1.037 0.764 1.402 sum -0.550 15.518 -8.065 17.497 Atomic orbital electron populations 1.22791 0.94992 1.02702 1.02309 1.20362 0.95697 0.95636 0.94007 1.21852 1.01074 0.94368 1.02166 1.22763 1.01423 1.02424 0.96897 1.21960 0.99136 0.94138 0.99124 1.20349 0.92517 0.89485 0.88408 1.23094 1.02197 1.01373 0.97201 1.23155 0.97590 1.01756 1.02798 1.46014 1.24766 1.18454 1.47880 1.18279 0.84109 0.81207 0.79881 1.90574 1.23849 1.75539 1.57477 1.19401 1.00441 0.98426 1.09916 1.20587 0.97866 0.93442 0.95539 1.20962 0.96348 1.00211 1.03212 1.18162 0.90051 0.91925 0.89865 1.20034 1.27408 0.91691 1.12294 0.89333 1.26952 0.94123 1.00299 0.97270 1.69786 1.33482 1.15072 1.26755 0.85050 0.79268 0.76831 0.77685 1.18687 1.19427 1.17611 1.21065 1.01414 0.97954 1.04982 1.20738 0.92691 0.98218 0.94802 0.91603 0.91929 0.90456 0.92539 0.91967 0.92387 0.89863 0.92236 0.92933 0.90609 0.90902 0.94328 0.87031 0.92268 0.92808 0.86531 0.94296 0.75956 0.88930 0.88194 0.89884 0.86518 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 6.28 71.98 0.45 -2.09 16 2 C -0.06 -0.84 0.77 -52.18 -0.04 -0.88 16 3 C -0.14 -1.70 8.39 71.98 0.60 -1.09 16 4 C -0.18 -2.73 7.60 71.98 0.55 -2.18 16 5 C -0.11 -1.92 4.04 30.59 0.12 -1.80 16 6 C 0.18 4.48 0.80 3.60 0.00 4.48 16 7 C -0.18 -4.77 6.26 71.98 0.45 -4.32 16 8 C -0.20 -5.16 7.59 71.98 0.55 -4.61 16 9 N -0.72 -22.19 5.05 -425.96 -2.15 -24.35 16 10 C 0.57 23.63 7.15 86.73 0.62 24.25 16 11 O -0.59 -27.54 12.48 -3.98 -0.05 -27.59 16 12 C -0.28 -12.63 5.89 -19.93 -0.12 -12.75 16 13 C -0.05 -2.80 9.52 22.25 0.21 -2.59 16 14 C -0.19 -10.14 8.56 22.47 0.19 -9.95 16 15 C 0.10 5.41 5.50 -21.28 -0.12 5.29 16 16 C -0.49 -25.01 9.03 23.46 0.21 -24.79 16 17 H 0.09 4.28 7.86 -2.91 -0.02 4.25 16 18 C 0.03 1.42 5.31 85.35 0.45 1.87 16 19 N -0.83 -42.90 10.98 21.87 0.24 -42.66 16 20 Si 0.99 36.83 29.56 68.60 2.03 38.86 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 23 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 24 C -0.23 -10.77 9.73 22.47 0.22 -10.55 16 25 C -0.05 -1.88 9.47 22.25 0.21 -1.67 16 26 H 0.07 0.94 6.95 -2.38 -0.02 0.93 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.34 3.12 -2.38 -0.01 1.33 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.42 3.55 -2.39 -0.01 1.41 16 33 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 34 H 0.05 0.81 7.96 -2.39 -0.02 0.79 16 35 H 0.08 1.28 7.80 -2.38 -0.02 1.26 16 36 H 0.07 1.27 7.88 -2.39 -0.02 1.25 16 37 H 0.04 1.32 6.10 -2.39 -0.01 1.31 16 38 H 0.11 2.31 3.12 -2.39 -0.01 2.30 16 39 H 0.06 1.49 7.01 -2.39 -0.02 1.48 16 40 H 0.05 1.32 7.97 -2.39 -0.02 1.30 16 41 H 0.12 2.44 3.49 -2.38 -0.01 2.43 16 42 H 0.04 1.34 5.97 -2.39 -0.01 1.33 16 43 H 0.40 10.58 6.46 -92.71 -0.60 9.99 16 44 H 0.09 4.75 7.63 -2.91 -0.02 4.73 16 45 H 0.10 5.66 6.50 -2.91 -0.02 5.64 16 46 H 0.29 13.68 8.29 -92.70 -0.77 12.91 16 47 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.13 4.21 6.37 -2.91 -0.02 4.19 16 Total: -1.00 -62.96 354.06 5.02 -57.94 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.38 Total: 41.18 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 4.57 Total: -43.38 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.91 Total: -67.01 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -62.96 5.02 -57.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.798 kcal (2) G-P(sol) polarization free energy of solvation -62.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds