Wall clock time and date at job start Tue Mar 31 2020 08:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47369 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47235 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99824 * 269.72260 * 5 4 3 7 7 C 1.38231 * 119.99498 * 179.76693 * 6 5 4 8 8 C 1.38242 * 120.00456 * 0.51116 * 7 6 5 9 9 C 1.50698 * 120.00101 * 179.72554 * 8 7 6 10 10 C 1.50705 * 109.46610 * 270.02087 * 9 8 7 11 11 O 1.21287 * 120.00218 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99316 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00601 * 0.02562 * 12 10 9 14 14 H 1.07997 * 120.00243 * 322.25778 * 13 12 10 15 15 C 1.38949 * 120.00154 * 142.25293 * 13 12 10 16 16 N 1.31414 * 119.99976 * 157.63228 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 337.62649 * 15 13 12 18 18 H 1.48503 * 109.46728 * 95.70148 * 17 15 13 19 19 H 1.48503 * 109.47257 * 215.69869 * 17 15 13 20 20 H 1.48498 * 109.47323 * 335.70158 * 17 15 13 21 21 C 1.46504 * 119.99402 * 179.97438 * 12 10 9 22 22 C 1.52997 * 109.47230 * 83.62024 * 21 12 10 23 23 C 1.53002 * 109.47141 * 179.97438 * 22 21 12 24 24 C 1.38234 * 119.99723 * 359.74668 * 8 7 6 25 25 C 1.38228 * 120.00057 * 90.00061 * 5 4 3 26 26 H 1.09009 * 109.46679 * 60.00059 * 1 2 3 27 27 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47702 * 300.00911 * 1 2 3 29 29 H 1.08995 * 109.47289 * 239.99371 * 2 1 3 30 30 H 1.09003 * 109.46324 * 119.99764 * 2 1 3 31 31 H 1.08995 * 109.47461 * 59.99476 * 3 2 1 32 32 H 1.09009 * 109.47205 * 299.99619 * 3 2 1 33 33 H 1.09005 * 109.46835 * 59.99734 * 4 3 2 34 34 H 1.08996 * 109.46800 * 300.00334 * 4 3 2 35 35 H 1.07995 * 119.99845 * 0.02562 * 6 5 4 36 36 H 1.08007 * 119.99787 * 180.23236 * 7 6 5 37 37 H 1.08999 * 109.47358 * 30.01613 * 9 8 7 38 38 H 1.08993 * 109.46915 * 150.02173 * 9 8 7 39 39 H 0.97002 * 119.99806 * 180.02562 * 16 15 13 40 40 H 1.09011 * 109.47066 * 203.61839 * 21 12 10 41 41 H 1.08992 * 109.47311 * 323.61664 * 21 12 10 42 42 H 1.09002 * 109.47198 * 299.99903 * 22 21 12 43 43 H 1.09003 * 109.47512 * 59.99215 * 22 21 12 44 44 H 1.08997 * 109.46818 * 60.00008 * 23 22 21 45 45 H 1.09004 * 109.47021 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.46822 * 299.99461 * 23 22 21 47 47 H 1.07993 * 120.00093 * 179.97438 * 24 8 7 48 48 H 1.07999 * 119.99931 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3088 3.5122 -1.1975 7 6 4.7650 4.8171 -1.1980 8 6 4.9949 5.4695 -0.0012 9 6 5.4981 6.8900 -0.0018 10 6 7.0052 6.8889 -0.0012 11 8 7.6109 5.8381 -0.0008 12 7 7.6798 8.0557 -0.0012 13 6 6.9951 9.2434 -0.0011 14 1 6.0847 9.3420 -0.5736 15 6 7.4725 10.3205 0.7356 16 7 7.1123 11.5441 0.4194 17 14 8.6262 10.0292 2.1756 18 1 10.0317 10.1897 1.7240 19 1 8.3358 11.0130 3.2494 20 1 8.4282 8.6533 2.6980 21 6 9.1448 8.0547 0.0000 22 6 9.6558 7.8935 -1.4331 23 6 11.1858 7.8930 -1.4319 24 6 4.7636 4.8187 1.1963 25 6 4.3023 3.5155 1.1968 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 4.1330 3.0011 -2.1325 36 1 4.9461 5.3254 -2.1336 37 1 5.1356 7.4035 -0.8923 38 1 5.1348 7.4045 0.8876 39 1 7.4459 12.2960 0.9335 40 1 9.5085 8.9962 0.4117 41 1 9.5071 7.2274 0.6101 42 1 9.2922 6.9520 -1.8448 43 1 9.2935 8.7208 -2.0433 44 1 11.5484 7.0659 -0.8217 45 1 11.5499 7.7777 -2.4529 46 1 11.5491 8.8347 -1.0205 47 1 4.9436 5.3282 2.1313 48 1 4.1223 3.0068 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:20 Heat of formation + Delta-G solvation = -40.371074 kcal Electronic energy + Delta-G solvation = -24409.880269 eV Core-core repulsion = 21042.580641 eV Total energy + Delta-G solvation = -3367.299628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.51599 -38.52395 -36.00798 -35.19473 -33.16962 -32.73164 -31.64190 -30.56679 -29.91550 -27.09708 -25.63780 -24.65477 -23.28478 -22.37743 -21.37132 -21.14405 -20.31758 -18.95953 -17.04461 -16.17043 -15.86896 -15.72930 -15.26550 -14.96709 -14.64027 -14.21853 -14.19574 -13.93748 -13.79630 -13.17304 -13.15500 -12.99602 -12.91739 -12.61353 -12.49780 -12.32313 -11.86502 -11.71208 -11.54233 -11.45441 -11.26383 -11.20275 -11.07306 -10.98683 -10.81215 -10.73670 -10.52925 -10.47252 -10.38464 -10.04984 -9.78540 -9.20932 -8.64811 -8.53734 -8.06737 -7.79267 -6.52588 -4.10588 1.70491 1.79021 3.02930 3.19319 3.28086 3.75097 4.02545 4.10423 4.50084 4.66239 4.74891 4.92096 4.94437 5.05428 5.14040 5.30388 5.32909 5.38697 5.55470 5.56825 5.58584 5.60564 5.63866 5.65409 5.80727 5.84684 5.88019 5.89845 5.95292 6.03573 6.09773 6.13951 6.15963 6.20649 6.29684 6.36153 6.38770 6.43697 6.47125 6.54029 6.76737 6.79155 6.89978 6.90753 7.09921 7.35886 7.38821 8.05007 8.22512 8.93711 9.34804 9.70088 10.58149 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.002933 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.508531 B = 9544.012801 C =10111.096968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.076 4.076 5 C -0.097 4.097 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.048 4.048 9 C -0.087 4.087 10 C 0.483 3.517 11 O -0.591 6.591 12 N -0.466 5.466 13 C -0.346 4.346 14 H 0.104 0.896 15 C 0.069 3.931 16 N -0.858 5.858 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.261 1.261 21 C 0.105 3.895 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.105 4.105 25 C -0.118 4.118 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.275 0.725 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.118 0.882 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -14.837 -0.876 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.114 4.114 5 C -0.097 4.097 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.048 4.048 9 C -0.126 4.126 10 C 0.273 3.727 11 O -0.475 6.475 12 N -0.187 5.187 13 C -0.473 4.473 14 H 0.122 0.878 15 C -0.139 4.139 16 N -0.493 5.493 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.018 4.018 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.124 4.124 25 C -0.136 4.136 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.136 0.864 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.632 -15.117 -0.837 16.529 hybrid contribution 0.674 0.363 0.761 1.080 sum -5.958 -14.754 -0.076 15.912 Atomic orbital electron populations 1.21780 0.96015 1.01367 1.01883 1.21556 0.95755 0.97092 1.01896 1.21610 0.94712 0.96369 1.02462 1.20551 0.95290 0.93095 1.02424 1.19711 1.00796 0.95860 0.93323 1.20870 1.00819 0.94838 0.97092 1.20959 0.99109 0.94696 0.97604 1.19602 0.96418 0.95659 0.93124 1.20465 0.94239 0.92921 1.04995 1.20251 0.89135 0.83475 0.79870 1.90563 1.70375 1.31539 1.55062 1.43771 1.03873 1.05707 1.65325 1.19068 1.11021 0.87044 1.30183 0.87841 1.25333 0.96845 0.94707 0.97023 1.69778 1.43571 0.98189 1.37744 0.86991 0.80673 0.79214 0.83093 1.20089 1.21426 1.18546 1.21615 0.82666 1.00823 0.96673 1.21766 0.94794 1.02315 0.98144 1.21706 0.96408 1.01343 1.01038 1.20976 0.98970 0.94729 0.97680 1.20874 1.00785 0.94847 0.97114 0.92760 0.92969 0.92754 0.92114 0.92119 0.91868 0.91862 0.91413 0.91413 0.86763 0.86506 0.88941 0.88376 0.91472 0.91497 0.91932 0.91916 0.91446 0.93058 0.93046 0.93022 0.86445 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.13 16 3 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 4 C -0.08 -0.80 5.35 -27.88 -0.15 -0.95 16 5 C -0.10 -1.33 5.13 -104.63 -0.54 -1.87 16 6 C -0.12 -1.71 9.70 -39.58 -0.38 -2.10 16 7 C -0.11 -1.75 9.70 -39.58 -0.38 -2.13 16 8 C -0.05 -0.86 4.37 -104.62 -0.46 -1.31 16 9 C -0.09 -1.69 4.52 -29.03 -0.13 -1.82 16 10 C 0.48 11.19 7.58 -10.98 -0.08 11.11 16 11 O -0.59 -14.85 15.72 5.55 0.09 -14.76 16 12 N -0.47 -11.18 2.19 -114.81 -0.25 -11.43 16 13 C -0.35 -8.81 9.05 -14.94 -0.14 -8.95 16 14 H 0.10 2.72 7.24 -52.49 -0.38 2.34 16 15 C 0.07 1.78 5.26 -17.47 -0.09 1.69 16 16 N -0.86 -23.26 13.96 55.50 0.77 -22.49 16 17 Si 0.87 20.33 25.05 -169.99 -4.26 16.08 16 18 H -0.27 -6.16 6.69 56.52 0.38 -5.78 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.11 2.36 3.93 -4.04 -0.02 2.35 16 22 C -0.13 -2.60 6.21 -26.73 -0.17 -2.76 16 23 C -0.15 -2.37 9.91 37.16 0.37 -2.01 16 24 C -0.11 -1.77 9.70 -39.58 -0.38 -2.15 16 25 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.09 1.72 7.61 -51.93 -0.40 1.32 16 38 H 0.10 1.87 8.04 -51.93 -0.42 1.45 16 39 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.07 1.53 3.65 -51.92 -0.19 1.34 16 41 H 0.06 1.41 7.62 -51.93 -0.40 1.01 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 48 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -28.93 387.56 -9.21 -38.15 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.54 Total: 4.70 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.86 Total: -16.08 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.52 Total: -33.92 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.09 Total: -14.76 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.26 Total: 16.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.93 -9.21 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.226 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds