Wall clock time and date at job start Tue Mar 31 2020 08:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47369 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47235 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99824 * 269.72260 * 5 4 3 7 7 C 1.38231 * 119.99498 * 179.76693 * 6 5 4 8 8 C 1.38242 * 120.00456 * 0.51116 * 7 6 5 9 9 C 1.50698 * 120.00101 * 179.72554 * 8 7 6 10 10 C 1.50705 * 109.46610 * 270.02087 * 9 8 7 11 11 O 1.21287 * 120.00218 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99316 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00601 * 0.02562 * 12 10 9 14 14 H 1.07997 * 120.00243 * 322.25778 * 13 12 10 15 15 C 1.38949 * 120.00154 * 142.25293 * 13 12 10 16 16 N 1.31414 * 119.99976 * 157.63228 * 15 13 12 17 17 Si 1.86796 * 120.00088 * 337.62649 * 15 13 12 18 18 H 1.48503 * 109.46728 * 95.70148 * 17 15 13 19 19 H 1.48503 * 109.47257 * 215.69869 * 17 15 13 20 20 H 1.48498 * 109.47323 * 335.70158 * 17 15 13 21 21 C 1.46504 * 119.99402 * 179.97438 * 12 10 9 22 22 C 1.52997 * 109.47230 * 83.62024 * 21 12 10 23 23 C 1.53002 * 109.47141 * 179.97438 * 22 21 12 24 24 C 1.38234 * 119.99723 * 359.74668 * 8 7 6 25 25 C 1.38228 * 120.00057 * 90.00061 * 5 4 3 26 26 H 1.09009 * 109.46679 * 60.00059 * 1 2 3 27 27 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47702 * 300.00911 * 1 2 3 29 29 H 1.08995 * 109.47289 * 239.99371 * 2 1 3 30 30 H 1.09003 * 109.46324 * 119.99764 * 2 1 3 31 31 H 1.08995 * 109.47461 * 59.99476 * 3 2 1 32 32 H 1.09009 * 109.47205 * 299.99619 * 3 2 1 33 33 H 1.09005 * 109.46835 * 59.99734 * 4 3 2 34 34 H 1.08996 * 109.46800 * 300.00334 * 4 3 2 35 35 H 1.07995 * 119.99845 * 0.02562 * 6 5 4 36 36 H 1.08007 * 119.99787 * 180.23236 * 7 6 5 37 37 H 1.08999 * 109.47358 * 30.01613 * 9 8 7 38 38 H 1.08993 * 109.46915 * 150.02173 * 9 8 7 39 39 H 0.97002 * 119.99806 * 180.02562 * 16 15 13 40 40 H 1.09011 * 109.47066 * 203.61839 * 21 12 10 41 41 H 1.08992 * 109.47311 * 323.61664 * 21 12 10 42 42 H 1.09002 * 109.47198 * 299.99903 * 22 21 12 43 43 H 1.09003 * 109.47512 * 59.99215 * 22 21 12 44 44 H 1.08997 * 109.46818 * 60.00008 * 23 22 21 45 45 H 1.09004 * 109.47021 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.46822 * 299.99461 * 23 22 21 47 47 H 1.07993 * 120.00093 * 179.97438 * 24 8 7 48 48 H 1.07999 * 119.99931 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3088 3.5122 -1.1975 7 6 4.7650 4.8171 -1.1980 8 6 4.9949 5.4695 -0.0012 9 6 5.4981 6.8900 -0.0018 10 6 7.0052 6.8889 -0.0012 11 8 7.6109 5.8381 -0.0008 12 7 7.6798 8.0557 -0.0012 13 6 6.9951 9.2434 -0.0011 14 1 6.0847 9.3420 -0.5736 15 6 7.4725 10.3205 0.7356 16 7 7.1123 11.5441 0.4194 17 14 8.6262 10.0292 2.1756 18 1 10.0317 10.1897 1.7240 19 1 8.3358 11.0130 3.2494 20 1 8.4282 8.6533 2.6980 21 6 9.1448 8.0547 0.0000 22 6 9.6558 7.8935 -1.4331 23 6 11.1858 7.8930 -1.4319 24 6 4.7636 4.8187 1.1963 25 6 4.3023 3.5155 1.1968 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 4.1330 3.0011 -2.1325 36 1 4.9461 5.3254 -2.1336 37 1 5.1356 7.4035 -0.8923 38 1 5.1348 7.4045 0.8876 39 1 7.4459 12.2960 0.9335 40 1 9.5085 8.9962 0.4117 41 1 9.5071 7.2274 0.6101 42 1 9.2922 6.9520 -1.8448 43 1 9.2935 8.7208 -2.0433 44 1 11.5484 7.0659 -0.8217 45 1 11.5499 7.7777 -2.4529 46 1 11.5491 8.8347 -1.0205 47 1 4.9436 5.3282 2.1313 48 1 4.1223 3.0068 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:19 Heat of formation + Delta-G solvation = -52.468206 kcal Electronic energy + Delta-G solvation = -24410.404840 eV Core-core repulsion = 21042.580641 eV Total energy + Delta-G solvation = -3367.824199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04836 -40.00938 -37.25552 -36.60822 -34.82696 -33.99394 -33.45732 -31.76479 -31.01623 -28.35838 -27.30766 -26.31312 -24.31710 -23.57838 -22.79092 -21.99858 -21.50623 -20.81730 -18.85320 -18.02439 -17.32403 -16.85509 -16.68516 -16.16653 -15.94024 -15.75639 -15.59786 -15.48703 -14.88260 -14.69102 -14.37715 -14.24514 -14.16805 -13.99814 -13.76117 -13.46230 -13.34978 -13.26171 -12.85926 -12.74949 -12.60306 -12.54879 -12.25732 -12.17416 -12.09362 -11.94442 -11.91057 -11.73358 -11.54408 -11.43671 -11.34877 -11.10402 -10.50202 -9.76094 -9.73872 -9.31632 -8.54446 -6.14285 0.47777 0.57614 1.16399 1.29205 1.40377 1.89067 2.15741 2.57046 2.87079 3.07468 3.80639 3.92161 3.94590 3.98917 4.11239 4.15148 4.17832 4.25261 4.33646 4.38761 4.38983 4.40591 4.54830 4.59903 4.63992 4.67098 4.78085 4.81842 4.85985 4.87638 4.92379 5.00894 5.01906 5.07989 5.17619 5.20815 5.24914 5.25969 5.29229 5.34695 5.42484 5.48397 5.54111 5.56772 5.77403 5.80707 6.03854 6.20142 6.25316 6.94119 7.40895 7.78822 8.59714 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.002933 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.508531 B = 9544.012801 C =10111.096968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.073 4.073 5 C -0.091 4.091 6 C -0.121 4.121 7 C -0.120 4.120 8 C -0.075 4.075 9 C -0.079 4.079 10 C 0.480 3.520 11 O -0.610 6.610 12 N -0.477 5.477 13 C -0.343 4.343 14 H 0.087 0.913 15 C 0.034 3.966 16 N -0.892 5.892 17 Si 0.920 3.080 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.099 3.901 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.280 0.720 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.116 0.884 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -16.842 -0.734 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.075 4.075 9 C -0.118 4.118 10 C 0.270 3.730 11 O -0.496 6.496 12 N -0.198 5.198 13 C -0.471 4.471 14 H 0.104 0.896 15 C -0.171 4.171 16 N -0.528 5.528 17 Si 0.746 3.254 18 H -0.184 1.184 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.024 4.024 22 C -0.163 4.163 23 C -0.199 4.199 24 C -0.141 4.141 25 C -0.139 4.139 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.134 0.866 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.411 -17.118 -0.700 18.293 hybrid contribution 0.543 0.897 0.681 1.250 sum -5.868 -16.221 -0.019 17.250 Atomic orbital electron populations 1.21788 0.95671 1.01937 1.01757 1.21532 0.96047 0.95985 1.02444 1.21561 0.93728 0.97409 1.02029 1.20606 0.96002 0.90899 1.03513 1.20130 0.99054 0.97300 0.92640 1.21187 0.99918 0.94062 0.98665 1.21115 0.99736 0.95821 0.97182 1.19566 0.98557 0.95016 0.94387 1.20381 0.91770 0.94698 1.04950 1.20823 0.90569 0.82853 0.78731 1.90529 1.71214 1.32076 1.55788 1.43918 1.04669 1.05469 1.65695 1.18956 1.10687 0.87578 1.29831 0.89585 1.25805 0.98308 0.94407 0.98564 1.69828 1.45228 0.98889 1.38885 0.86233 0.80086 0.78415 0.80657 1.18387 1.20826 1.19628 1.21744 0.81912 1.00378 0.98373 1.21688 0.97503 1.01164 0.95979 1.21677 0.93288 1.02020 1.02894 1.21123 0.99804 0.95912 0.97244 1.21177 0.99966 0.94048 0.98702 0.92896 0.92082 0.92924 0.91546 0.91597 0.92373 0.92305 0.90307 0.90382 0.84260 0.86382 0.88696 0.88532 0.90973 0.91875 0.92233 0.93004 0.92546 0.92223 0.90675 0.92474 0.86578 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.11 -1.77 5.20 30.59 0.16 -1.61 16 4 C -0.07 -1.33 5.35 29.85 0.16 -1.17 16 5 C -0.09 -2.32 5.13 -19.87 -0.10 -2.42 16 6 C -0.12 -3.31 9.70 22.27 0.22 -3.09 16 7 C -0.12 -3.97 9.70 22.27 0.22 -3.75 16 8 C -0.07 -2.73 4.37 -19.87 -0.09 -2.82 16 9 C -0.08 -3.17 4.52 29.10 0.13 -3.04 16 10 C 0.48 22.66 7.58 87.66 0.66 23.32 16 11 O -0.61 -31.02 15.72 -3.05 -0.05 -31.07 16 12 N -0.48 -23.20 2.19 -635.54 -1.39 -24.59 16 13 C -0.34 -17.84 9.05 84.04 0.76 -17.08 16 14 H 0.09 4.70 7.24 -2.91 -0.02 4.67 16 15 C 0.03 1.78 5.26 84.93 0.45 2.23 16 16 N -0.89 -48.83 13.96 21.66 0.30 -48.53 16 17 Si 0.92 41.72 25.05 68.60 1.72 43.44 16 18 H -0.26 -10.97 6.69 99.48 0.67 -10.31 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.10 4.41 3.93 86.38 0.34 4.75 16 22 C -0.12 -4.87 6.21 30.59 0.19 -4.68 16 23 C -0.14 -4.27 9.91 71.98 0.71 -3.56 16 24 C -0.12 -4.11 9.70 22.27 0.22 -3.90 16 25 C -0.12 -3.37 9.70 22.27 0.22 -3.15 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 34 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.12 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.09 3.69 7.61 -2.39 -0.02 3.68 16 38 H 0.10 3.84 8.04 -2.39 -0.02 3.82 16 39 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.06 2.85 3.65 -2.38 -0.01 2.84 16 41 H 0.06 2.67 7.62 -2.39 -0.02 2.65 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 48 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -61.63 387.56 6.58 -55.05 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.86 Total: 28.26 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.14 Total: -22.56 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.09 Total: -73.12 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.72 Total: 43.44 kcal Total: -61.63 6.58 -55.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.580 kcal (2) G-P(sol) polarization free energy of solvation -61.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds