Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46929 * 2 1 4 4 C 1.38225 * 120.00313 * 269.72279 * 3 2 1 5 5 C 1.38242 * 120.00337 * 179.76813 * 4 3 2 6 6 C 1.38237 * 119.99542 * 0.50605 * 5 4 3 7 7 C 1.50700 * 119.99885 * 179.72409 * 6 5 4 8 8 H 1.08996 * 109.47274 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47108 * 60.02312 * 7 6 5 10 10 C 1.50704 * 109.47051 * 300.02713 * 7 6 5 11 11 O 1.21280 * 120.00499 * 94.99814 * 10 7 6 12 12 N 1.34780 * 119.99557 * 274.99771 * 10 7 6 13 13 C 1.46502 * 119.99556 * 185.17893 * 12 10 7 14 14 C 1.50702 * 109.47146 * 90.00241 * 13 12 10 15 15 H 1.07996 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99843 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46815 * 60.00082 * 18 16 14 20 20 H 1.48497 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47197 * 300.00029 * 18 16 14 22 22 C 1.46498 * 120.00105 * 5.17211 * 12 10 7 23 23 C 1.53005 * 109.46591 * 115.06204 * 22 12 10 24 24 C 1.52997 * 109.47317 * 235.05999 * 22 12 10 25 25 C 1.38237 * 120.00020 * 359.74937 * 6 5 4 26 26 C 1.38237 * 119.99987 * 359.97438 * 25 6 5 27 27 H 1.08997 * 109.47232 * 299.99861 * 1 2 3 28 28 H 1.08999 * 109.46873 * 60.00103 * 1 2 3 29 29 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46873 * 119.99897 * 2 1 3 31 31 H 1.08997 * 109.47232 * 240.00139 * 2 1 3 32 32 H 1.08005 * 119.99802 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00072 * 180.23267 * 5 4 3 34 34 H 1.09007 * 109.46973 * 55.01629 * 9 7 6 35 35 H 1.08999 * 109.47232 * 175.02082 * 9 7 6 36 36 H 1.09000 * 109.47140 * 295.02082 * 9 7 6 37 37 H 1.09003 * 109.46889 * 209.99868 * 13 12 10 38 38 H 1.08998 * 109.47256 * 329.99768 * 13 12 10 39 39 H 0.96998 * 120.00387 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47431 * 355.06522 * 22 12 10 41 41 H 1.09008 * 109.47184 * 60.00239 * 23 22 12 42 42 H 1.09004 * 109.46901 * 179.97438 * 23 22 12 43 43 H 1.08993 * 109.47609 * 299.99893 * 23 22 12 44 44 H 1.08999 * 109.46992 * 60.00656 * 24 22 12 45 45 H 1.09003 * 109.46966 * 180.02562 * 24 22 12 46 46 H 1.09000 * 109.47298 * 300.00605 * 24 22 12 47 47 H 1.08000 * 119.99718 * 179.97438 * 25 6 5 48 48 H 1.07998 * 119.99544 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1970 5 6 2.7243 3.3755 -1.1970 6 6 2.9546 4.0272 0.0002 7 6 3.4578 5.4476 0.0002 8 1 3.5792 5.7901 1.0278 9 6 2.4507 6.3455 -0.7211 10 6 4.7854 5.5103 -0.7103 11 8 4.8305 5.8003 -1.8870 12 7 5.9227 5.2439 -0.0378 13 6 7.2201 5.4147 -0.6965 14 6 7.7154 6.8204 -0.4738 15 1 7.1228 7.5171 0.1005 16 6 8.9250 7.2171 -1.0033 17 7 9.6469 6.3687 -1.7023 18 14 9.5386 8.9598 -0.7279 19 1 9.6858 9.2084 0.7288 20 1 10.8544 9.1325 -1.3944 21 1 8.5638 9.9239 -1.2985 22 6 5.8615 4.7838 1.3517 23 6 6.4040 3.3559 1.4403 24 6 6.7071 5.7061 2.2321 25 6 2.7238 3.3756 1.1973 26 6 2.2622 2.0726 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0920 1.5600 -2.1324 33 1 2.9050 3.8844 -2.1324 34 1 1.4688 6.2325 -0.2614 35 1 2.7703 7.3848 -0.6444 36 1 2.3953 6.0589 -1.7712 37 1 7.9358 4.7068 -0.2783 38 1 7.1115 5.2327 -1.7657 39 1 10.4977 6.6478 -2.0751 40 1 4.8272 4.8015 1.6951 41 1 7.4384 3.3382 1.0969 42 1 6.3589 3.0136 2.4743 43 1 5.8016 2.6987 0.8132 44 1 6.3206 6.7233 2.1689 45 1 6.6618 5.3635 3.2659 46 1 7.7414 5.6884 1.8887 47 1 2.9041 3.8846 2.1326 48 1 2.0822 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068126382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = -33.926760 kcal Electronic energy + Delta-G solvation = -25819.572779 eV Core-core repulsion = 22452.552598 eV Total energy + Delta-G solvation = -3367.020181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14112 -38.69288 -36.02023 -34.98234 -32.85606 -32.28916 -30.86989 -30.75827 -28.48911 -27.55096 -26.62031 -24.71627 -23.49254 -22.72137 -22.10632 -21.13307 -20.36954 -17.87009 -16.90221 -16.51432 -16.20262 -15.40344 -15.14775 -15.00449 -14.36007 -14.10799 -13.81865 -13.73397 -13.48211 -13.39143 -13.25276 -13.09400 -12.54725 -12.46259 -12.24888 -12.04771 -11.90600 -11.60967 -11.58074 -11.45195 -11.38680 -11.20755 -11.05186 -10.89301 -10.82423 -10.75588 -10.68769 -10.47011 -10.25538 -9.95065 -9.52335 -9.00282 -8.82125 -8.39295 -8.29345 -7.57772 -6.00464 -4.04123 1.37518 1.49579 3.32772 3.37515 3.38913 3.46790 3.78024 4.00594 4.47036 4.66491 4.75437 4.95631 4.98184 5.05754 5.16750 5.19857 5.29133 5.32469 5.33722 5.40626 5.52571 5.58416 5.59571 5.64867 5.71114 5.74128 5.85634 5.95218 5.98435 6.04852 6.07895 6.16028 6.17147 6.22206 6.33263 6.41286 6.41525 6.52195 6.66050 6.66832 6.74042 7.00106 7.07735 7.17265 7.52685 7.62929 7.96728 8.28998 8.51587 8.94597 9.15753 9.60018 11.07556 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.003793 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.471462 B = 7379.997560 C = 7636.344853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.100 4.100 6 C -0.068 4.068 7 C -0.078 4.078 8 H 0.093 0.907 9 C -0.128 4.128 10 C 0.516 3.484 11 O -0.541 6.541 12 N -0.589 5.589 13 C 0.247 3.753 14 C -0.520 4.520 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.132 3.868 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.110 4.110 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.211 -10.389 8.256 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.099 4.099 8 H 0.111 0.889 9 C -0.186 4.186 10 C 0.302 3.698 11 O -0.419 6.419 12 N -0.320 5.320 13 C 0.128 3.872 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.027 3.973 23 C -0.217 4.217 24 C -0.214 4.214 25 C -0.128 4.128 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.968 -10.256 7.524 20.415 hybrid contribution 0.589 1.028 0.231 1.207 sum -15.379 -9.228 7.755 19.540 Atomic orbital electron populations 1.21742 0.94918 1.01438 1.02196 1.20518 0.96002 0.92912 1.02689 1.19842 0.99701 0.96086 0.93283 1.20982 1.00221 0.94768 0.97427 1.21128 0.97870 0.94576 0.98265 1.19527 0.99188 0.94649 0.93499 1.20414 0.94690 0.93300 1.01519 0.88903 1.21620 0.96823 0.98907 1.01222 1.20064 0.84904 0.77597 0.87192 1.90642 1.86803 1.48653 1.15822 1.48280 1.07872 1.63861 1.11965 1.19207 0.77554 0.96556 0.93903 1.21408 1.03909 0.97180 1.33348 0.92482 1.24921 0.96729 0.97394 0.95082 1.69924 1.13477 1.34901 1.35147 0.86619 0.77929 0.84989 0.78238 1.20285 1.21272 1.20261 1.21042 0.99452 0.93725 0.83040 1.22129 1.02452 0.96163 1.00963 1.22132 1.02824 0.99163 0.97285 1.20998 0.99789 0.94863 0.97186 1.20900 1.00631 0.94764 0.97302 0.92616 0.92582 0.92624 0.91204 0.91182 0.86335 0.85527 0.92485 0.92048 0.91260 0.95004 0.94069 0.92764 0.90633 0.91669 0.92441 0.92930 0.92612 0.93380 0.90174 0.86118 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.08 -0.73 6.07 -27.88 -0.17 -0.90 16 3 C -0.09 -1.00 5.13 -104.63 -0.54 -1.54 16 4 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 5 C -0.10 -1.47 8.87 -39.58 -0.35 -1.82 16 6 C -0.07 -0.97 4.52 -104.62 -0.47 -1.45 16 7 C -0.08 -1.23 2.10 -92.92 -0.20 -1.42 16 8 H 0.09 1.31 6.23 -51.93 -0.32 0.99 16 9 C -0.13 -1.88 8.57 37.16 0.32 -1.56 16 10 C 0.52 10.89 6.40 -10.98 -0.07 10.82 16 11 O -0.54 -13.61 15.54 5.56 0.09 -13.53 16 12 N -0.59 -12.58 2.38 -167.46 -0.40 -12.98 16 13 C 0.25 6.46 4.50 -5.19 -0.02 6.43 16 14 C -0.52 -14.49 7.84 -34.44 -0.27 -14.76 16 15 H 0.06 1.58 7.54 -52.49 -0.40 1.19 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.23 3.00 -67.93 -0.20 2.02 16 23 C -0.16 -2.47 9.25 37.16 0.34 -2.13 16 24 C -0.16 -2.64 8.36 37.16 0.31 -2.33 16 25 C -0.11 -1.33 8.89 -39.58 -0.35 -1.69 16 26 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.13 2.02 7.64 -52.49 -0.40 1.62 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16 37 H 0.03 0.85 6.69 -51.93 -0.35 0.50 16 38 H 0.04 1.24 7.36 -51.93 -0.38 0.85 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 1.09 3.95 -51.93 -0.21 0.89 16 41 H 0.06 1.13 6.86 -51.92 -0.36 0.78 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.59 6.95 -51.93 -0.36 1.23 16 47 H 0.12 1.24 7.45 -52.49 -0.39 0.85 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -32.03 381.82 -9.16 -41.19 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.15 Total: 1.59 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.17 Total: -12.97 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.34 Total: -38.88 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.03 -9.16 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068126382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.264 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds