Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46929 * 2 1 4 4 C 1.38225 * 120.00313 * 269.72279 * 3 2 1 5 5 C 1.38242 * 120.00337 * 179.76813 * 4 3 2 6 6 C 1.38237 * 119.99542 * 0.50605 * 5 4 3 7 7 C 1.50700 * 119.99885 * 179.72409 * 6 5 4 8 8 H 1.08996 * 109.47274 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47108 * 60.02312 * 7 6 5 10 10 C 1.50704 * 109.47051 * 300.02713 * 7 6 5 11 11 O 1.21280 * 120.00499 * 94.99814 * 10 7 6 12 12 N 1.34780 * 119.99557 * 274.99771 * 10 7 6 13 13 C 1.46502 * 119.99556 * 185.17893 * 12 10 7 14 14 C 1.50702 * 109.47146 * 90.00241 * 13 12 10 15 15 H 1.07996 * 119.99894 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99843 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46815 * 60.00082 * 18 16 14 20 20 H 1.48497 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47197 * 300.00029 * 18 16 14 22 22 C 1.46498 * 120.00105 * 5.17211 * 12 10 7 23 23 C 1.53005 * 109.46591 * 115.06204 * 22 12 10 24 24 C 1.52997 * 109.47317 * 235.05999 * 22 12 10 25 25 C 1.38237 * 120.00020 * 359.74937 * 6 5 4 26 26 C 1.38237 * 119.99987 * 359.97438 * 25 6 5 27 27 H 1.08997 * 109.47232 * 299.99861 * 1 2 3 28 28 H 1.08999 * 109.46873 * 60.00103 * 1 2 3 29 29 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46873 * 119.99897 * 2 1 3 31 31 H 1.08997 * 109.47232 * 240.00139 * 2 1 3 32 32 H 1.08005 * 119.99802 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00072 * 180.23267 * 5 4 3 34 34 H 1.09007 * 109.46973 * 55.01629 * 9 7 6 35 35 H 1.08999 * 109.47232 * 175.02082 * 9 7 6 36 36 H 1.09000 * 109.47140 * 295.02082 * 9 7 6 37 37 H 1.09003 * 109.46889 * 209.99868 * 13 12 10 38 38 H 1.08998 * 109.47256 * 329.99768 * 13 12 10 39 39 H 0.96998 * 120.00387 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47431 * 355.06522 * 22 12 10 41 41 H 1.09008 * 109.47184 * 60.00239 * 23 22 12 42 42 H 1.09004 * 109.46901 * 179.97438 * 23 22 12 43 43 H 1.08993 * 109.47609 * 299.99893 * 23 22 12 44 44 H 1.08999 * 109.46992 * 60.00656 * 24 22 12 45 45 H 1.09003 * 109.46966 * 180.02562 * 24 22 12 46 46 H 1.09000 * 109.47298 * 300.00605 * 24 22 12 47 47 H 1.08000 * 119.99718 * 179.97438 * 25 6 5 48 48 H 1.07998 * 119.99544 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1970 5 6 2.7243 3.3755 -1.1970 6 6 2.9546 4.0272 0.0002 7 6 3.4578 5.4476 0.0002 8 1 3.5792 5.7901 1.0278 9 6 2.4507 6.3455 -0.7211 10 6 4.7854 5.5103 -0.7103 11 8 4.8305 5.8003 -1.8870 12 7 5.9227 5.2439 -0.0378 13 6 7.2201 5.4147 -0.6965 14 6 7.7154 6.8204 -0.4738 15 1 7.1228 7.5171 0.1005 16 6 8.9250 7.2171 -1.0033 17 7 9.6469 6.3687 -1.7023 18 14 9.5386 8.9598 -0.7279 19 1 9.6858 9.2084 0.7288 20 1 10.8544 9.1325 -1.3944 21 1 8.5638 9.9239 -1.2985 22 6 5.8615 4.7838 1.3517 23 6 6.4040 3.3559 1.4403 24 6 6.7071 5.7061 2.2321 25 6 2.7238 3.3756 1.1973 26 6 2.2622 2.0726 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0920 1.5600 -2.1324 33 1 2.9050 3.8844 -2.1324 34 1 1.4688 6.2325 -0.2614 35 1 2.7703 7.3848 -0.6444 36 1 2.3953 6.0589 -1.7712 37 1 7.9358 4.7068 -0.2783 38 1 7.1115 5.2327 -1.7657 39 1 10.4977 6.6478 -2.0751 40 1 4.8272 4.8015 1.6951 41 1 7.4384 3.3382 1.0969 42 1 6.3589 3.0136 2.4743 43 1 5.8016 2.6987 0.8132 44 1 6.3206 6.7233 2.1689 45 1 6.6618 5.3635 3.2659 46 1 7.7414 5.6884 1.8887 47 1 2.9041 3.8846 2.1326 48 1 2.0822 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068126382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = -50.640248 kcal Electronic energy + Delta-G solvation = -25820.297530 eV Core-core repulsion = 22452.552598 eV Total energy + Delta-G solvation = -3367.744932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47914 -39.94620 -37.64451 -36.07478 -34.88091 -33.36063 -32.42993 -31.81058 -29.54461 -29.39495 -27.95493 -26.12785 -24.85524 -23.70829 -23.56478 -22.42447 -21.45832 -19.38792 -18.60783 -18.37709 -17.40177 -16.91714 -16.35208 -16.23571 -16.06203 -15.41055 -15.03988 -14.86522 -14.66718 -14.56708 -14.38615 -14.15486 -14.02104 -13.88448 -13.50101 -13.36162 -13.30289 -13.05751 -12.97516 -12.82969 -12.62857 -12.59809 -12.45472 -12.26374 -12.24669 -12.08603 -12.01765 -11.71224 -11.63416 -11.56174 -11.42735 -10.61735 -10.58297 -9.78094 -9.44699 -9.32724 -8.19612 -6.32496 0.39605 0.53708 1.35514 1.39677 1.46623 1.83910 2.29682 2.45101 2.85074 3.09842 3.67368 3.73562 3.85248 3.97015 3.99553 4.11322 4.16927 4.30055 4.31790 4.40436 4.45930 4.55913 4.61378 4.71389 4.75437 4.80290 4.84840 4.88192 4.90824 5.01946 5.04516 5.09950 5.10377 5.13518 5.16577 5.21655 5.24226 5.27200 5.42164 5.43132 5.55243 5.57230 5.64521 5.71969 5.76597 5.90422 6.10621 6.14284 6.73664 6.84654 7.30830 7.50694 8.87702 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.003793 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.471462 B = 7379.997560 C = 7636.344853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.119 0.881 9 C -0.125 4.125 10 C 0.505 3.495 11 O -0.597 6.597 12 N -0.594 5.594 13 C 0.267 3.733 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.126 3.874 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.020 0.980 38 H -0.012 1.012 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.035 0.965 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.149 0.851 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 -11.121 12.043 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.085 4.085 8 H 0.137 0.863 9 C -0.183 4.183 10 C 0.294 3.706 11 O -0.478 6.478 12 N -0.324 5.324 13 C 0.145 3.855 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.787 3.213 19 H -0.183 1.183 20 H -0.207 1.207 21 H -0.204 1.204 22 C 0.023 3.977 23 C -0.210 4.210 24 C -0.209 4.209 25 C -0.123 4.123 26 C -0.132 4.132 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.006 0.994 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.061 0.939 47 H 0.167 0.833 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.753 -11.004 11.357 23.775 hybrid contribution 1.091 1.138 -0.976 1.854 sum -16.661 -9.866 10.381 21.971 Atomic orbital electron populations 1.21722 0.93983 1.02382 1.01947 1.20585 0.96701 0.91222 1.03562 1.20196 0.98325 0.97247 0.92794 1.21125 1.00465 0.94115 0.98816 1.21043 0.99765 0.95747 0.97609 1.19427 1.00927 0.93838 0.94356 1.20353 0.91189 0.95097 1.01814 0.86302 1.21617 0.98293 0.98138 1.00247 1.21141 0.86619 0.75993 0.86836 1.90605 1.87835 1.50902 1.18498 1.48334 1.06261 1.63937 1.13875 1.18590 0.79911 0.95775 0.91177 1.21629 1.04046 0.97757 1.33114 0.92573 1.25837 0.96983 1.01769 0.94702 1.70060 1.13919 1.37069 1.36125 0.85538 0.77240 0.79388 0.79094 1.18308 1.20655 1.20387 1.21434 1.01655 0.94332 0.80267 1.22076 1.00345 0.95204 1.03332 1.22077 1.00256 0.98921 0.99625 1.21274 0.98750 0.95250 0.97016 1.21292 0.99151 0.94353 0.98373 0.92265 0.93447 0.91135 0.89580 0.91136 0.85722 0.88615 0.89099 0.92785 0.93485 0.96206 0.99423 0.92618 0.87117 0.94535 0.88253 0.93407 0.93525 0.88950 0.93889 0.83298 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.19 6.07 29.85 0.18 -1.01 16 3 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 4 C -0.13 -3.16 9.70 22.27 0.22 -2.95 16 5 C -0.12 -3.72 8.87 22.27 0.20 -3.52 16 6 C -0.08 -2.32 4.52 -19.87 -0.09 -2.41 16 7 C -0.06 -1.96 2.10 -12.29 -0.03 -1.98 16 8 H 0.12 2.99 6.23 -2.39 -0.01 2.98 16 9 C -0.13 -3.67 8.57 71.98 0.62 -3.05 16 10 C 0.51 22.14 6.40 87.66 0.56 22.70 16 11 O -0.60 -32.32 15.54 -3.03 -0.05 -32.37 16 12 N -0.59 -26.13 2.38 -802.12 -1.91 -28.04 16 13 C 0.27 14.82 4.50 85.63 0.39 15.21 16 14 C -0.53 -30.50 7.84 25.60 0.20 -30.30 16 15 H 0.06 3.19 7.54 -2.91 -0.02 3.17 16 16 C 0.01 0.32 5.46 84.65 0.46 0.78 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 18 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.13 4.04 3.00 44.99 0.14 4.18 16 23 C -0.15 -4.45 9.25 71.98 0.67 -3.79 16 24 C -0.15 -4.83 8.36 71.98 0.60 -4.23 16 25 C -0.11 -2.13 8.89 22.27 0.20 -1.93 16 26 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.10 3.40 7.64 -2.91 -0.02 3.37 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.57 7.11 -2.39 -0.02 1.55 16 37 H 0.02 1.14 6.69 -2.39 -0.02 1.12 16 38 H -0.01 -0.81 7.36 -2.39 -0.02 -0.83 16 39 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.11 2.79 3.95 -2.39 -0.01 2.78 16 41 H 0.04 1.27 6.86 -2.38 -0.02 1.25 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.56 7.99 -2.39 -0.02 1.54 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.04 1.70 6.95 -2.39 -0.02 1.68 16 47 H 0.15 2.16 7.45 -2.91 -0.02 2.14 16 48 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -75.88 381.82 6.40 -69.48 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.92 Total: 17.67 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.13 Total: -16.98 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.63 Total: -85.36 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.37 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.88 6.40 -69.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068126382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.836 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds