Wall clock time and date at job start Tue Mar 31 2020 07:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 110.05838 * 2 1 4 4 C 1.54263 * 110.03356 * 238.58173 * 2 1 3 5 5 C 1.54887 * 104.19743 * 217.10687 * 4 2 1 6 6 C 1.54886 * 102.74916 * 37.94436 * 5 4 2 7 7 C 1.53878 * 110.03324 * 121.41524 * 2 1 3 8 8 H 1.09000 * 110.07536 * 238.59213 * 7 2 1 9 9 N 1.46506 * 110.02849 * 0.02562 * 7 2 1 10 10 C 1.39664 * 119.99782 * 203.61974 * 9 7 2 11 11 C 1.38974 * 120.04446 * 359.72763 * 10 9 7 12 12 C 1.38126 * 120.02978 * 179.71970 * 11 10 9 13 13 C 1.38214 * 120.12891 * 0.55463 * 12 11 10 14 14 C 1.38772 * 120.09503 * 359.71783 * 13 12 11 15 15 O 1.35893 * 120.01966 * 180.02562 * 14 13 12 16 16 C 1.42901 * 117.00089 * 359.97438 * 15 14 13 17 17 C 1.52997 * 109.47161 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47103 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99888 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99997 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47412 * 59.99900 * 22 20 18 24 24 H 1.48506 * 109.47206 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47560 * 300.00060 * 22 20 18 26 26 C 1.38618 * 119.96242 * 0.02562 * 14 13 12 27 27 H 1.08996 * 109.47329 * 298.59086 * 1 2 3 28 28 H 1.09001 * 109.46840 * 58.58242 * 1 2 3 29 29 H 1.08992 * 109.47494 * 178.58167 * 1 2 3 30 30 H 1.08998 * 109.46977 * 181.41606 * 3 2 1 31 31 H 1.08997 * 109.47365 * 301.41326 * 3 2 1 32 32 H 1.08998 * 109.46940 * 61.41699 * 3 2 1 33 33 H 1.09004 * 110.48903 * 98.43110 * 4 2 1 34 34 H 1.09003 * 110.60263 * 335.84082 * 4 2 1 35 35 H 1.09000 * 110.76177 * 279.62767 * 5 4 2 36 36 H 1.09004 * 110.91507 * 156.33268 * 5 4 2 37 37 H 1.09002 * 110.48732 * 203.38395 * 6 5 4 38 38 H 1.09004 * 110.49019 * 80.73388 * 6 5 4 39 39 H 0.96992 * 120.00060 * 23.61659 * 9 7 2 40 40 H 1.07996 * 119.98898 * 359.96981 * 11 10 9 41 41 H 1.08000 * 119.93274 * 180.29494 * 12 11 10 42 42 H 1.08003 * 119.95221 * 179.69822 * 13 12 11 43 43 H 1.09000 * 109.47177 * 300.00172 * 16 15 14 44 44 H 1.09003 * 109.46831 * 60.00299 * 16 15 14 45 45 H 1.09000 * 109.47175 * 300.00124 * 17 16 15 46 46 H 1.08996 * 109.47187 * 60.00066 * 17 16 15 47 47 H 0.97006 * 119.99678 * 179.97438 * 21 20 18 48 48 H 1.07996 * 120.06419 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7191 6 6 2.8873 -1.9407 0.7035 7 6 2.0571 -0.7535 1.2338 8 1 2.6865 -0.0958 1.8332 9 7 0.9358 -1.2456 2.0381 10 6 1.1144 -1.5085 3.3981 11 6 2.3568 -1.3091 3.9880 12 6 2.5317 -1.5637 5.3343 13 6 1.4755 -2.0279 6.0955 14 6 0.2341 -2.2343 5.5106 15 8 -0.8034 -2.6903 6.2606 16 6 -0.5447 -2.9367 7.6442 17 6 -1.8212 -3.4418 8.3196 18 6 -1.5486 -3.7011 9.7789 19 1 -0.5635 -3.5230 10.1842 20 6 -2.5570 -4.1646 10.5969 21 7 -3.7570 -4.3800 10.1037 22 14 -2.2189 -4.4867 12.4055 23 1 -1.7774 -3.2281 13.0584 24 1 -3.4583 -4.9757 13.0614 25 1 -1.1524 -5.5119 12.5349 26 6 0.0529 -1.9750 4.1610 27 1 -0.3634 0.4918 0.9023 28 1 -0.3633 0.5357 -0.8770 29 1 -0.3634 -1.0272 -0.0254 30 1 3.1443 1.4262 -0.0254 31 1 1.6762 1.9623 -0.8770 32 1 1.7175 1.9471 0.9024 33 1 2.3297 -0.0537 -2.0255 34 1 1.3152 -1.4659 -1.5988 35 1 4.1710 -0.8292 -0.6750 36 1 3.5356 -2.3678 -1.3413 37 1 3.7636 -2.1037 1.3310 38 1 2.2770 -2.8426 0.6572 39 1 0.0694 -1.3886 1.6262 40 1 3.1850 -0.9511 3.3945 41 1 3.4967 -1.4036 5.7922 42 1 1.6167 -2.2307 7.1469 43 1 0.2382 -3.6892 7.7391 44 1 -0.2208 -2.0128 8.1234 45 1 -2.6045 -2.6897 8.2247 46 1 -2.1447 -4.3657 7.8403 47 1 -4.4665 -4.7065 10.6791 48 1 -0.9126 -2.1346 3.7043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094307467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:58 Heat of formation + Delta-G solvation = -48.712024 kcal Electronic energy + Delta-G solvation = -24262.350869 eV Core-core repulsion = 20894.689551 eV Total energy + Delta-G solvation = -3367.661318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25633 -40.44336 -38.49594 -35.55852 -35.02076 -33.18004 -32.56198 -31.10232 -29.86771 -28.57520 -27.63196 -26.86122 -25.26916 -23.84877 -23.23877 -22.02332 -21.39543 -19.60537 -19.34208 -18.34231 -17.39936 -16.96994 -16.90703 -16.69732 -16.57901 -16.10067 -15.60223 -15.45156 -14.56164 -14.48281 -14.40606 -14.30616 -14.22026 -13.91860 -13.65830 -13.59566 -13.22067 -13.00709 -12.88642 -12.67123 -12.55027 -12.43342 -12.37912 -11.99706 -11.92912 -11.78328 -11.57718 -11.54492 -11.47947 -11.41785 -11.38883 -11.32411 -10.76010 -10.61247 -9.21610 -8.30573 -8.26314 -6.40208 0.58009 0.71068 1.40830 1.45263 1.53171 2.18632 2.41335 2.76983 2.96964 3.07772 3.49909 3.68168 3.85300 4.00529 4.25406 4.27304 4.28800 4.31861 4.36880 4.40231 4.41583 4.43793 4.51637 4.55595 4.68877 4.74696 4.77985 4.79026 4.87527 4.95012 5.01640 5.04208 5.07996 5.17265 5.22476 5.30258 5.33753 5.34240 5.37743 5.43059 5.46965 5.51535 5.53757 5.66300 5.67591 5.79395 6.07467 6.47302 6.62957 6.74287 6.82481 7.29739 8.86729 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.035177 B = 0.002251 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.786746 B =12437.221207 C =12777.351401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.140 4.140 7 C 0.153 3.847 8 H 0.084 0.916 9 N -0.734 5.734 10 C 0.255 3.745 11 C -0.237 4.237 12 C -0.032 4.032 13 C -0.283 4.283 14 C 0.153 3.847 15 O -0.343 6.343 16 C 0.087 3.913 17 C 0.029 3.971 18 C -0.547 4.547 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.256 4.256 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.403 0.597 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.059 0.941 44 H 0.059 0.941 45 H -0.002 1.002 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.796 10.381 -24.432 31.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.179 4.179 7 C 0.048 3.952 8 H 0.102 0.898 9 N -0.365 5.365 10 C 0.150 3.850 11 C -0.259 4.259 12 C -0.050 4.050 13 C -0.304 4.304 14 C 0.106 3.894 15 O -0.257 6.257 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.279 4.279 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.242 0.758 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.139 0.861 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.076 0.924 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.567 10.360 -24.549 31.376 hybrid contribution -0.827 -0.521 1.112 1.480 sum 15.740 9.839 -23.437 29.897 Atomic orbital electron populations 1.21876 0.94580 1.01605 1.02268 1.21376 0.95735 0.96041 0.94111 1.21884 1.01480 0.94014 1.02010 1.22471 0.97267 0.98882 0.96341 1.22441 0.97947 1.00343 0.94986 1.22885 0.99654 0.97962 0.97374 1.21788 0.87257 0.94766 0.91367 0.89847 1.45205 1.14125 1.72451 1.04727 1.17465 0.92418 0.90386 0.84737 1.20752 0.96601 1.12834 0.95746 1.20960 0.98056 0.92850 0.93164 1.21201 0.93670 1.14061 1.01453 1.19145 0.87078 0.91978 0.91159 1.86052 1.36382 1.79900 1.23374 1.22836 0.99622 0.99473 0.76826 1.18967 0.92103 0.95116 0.94685 1.21368 0.97715 1.45433 0.93916 0.91115 1.26066 0.94530 0.94673 1.04527 1.70123 1.02941 1.45844 1.38154 0.85318 0.77782 0.79167 0.77682 1.18799 1.20717 1.18792 1.19762 1.00301 1.16088 0.91763 0.92959 0.91254 0.92512 0.91572 0.91522 0.93327 0.90222 0.91616 0.90421 0.90989 0.91318 0.92319 0.75768 0.83964 0.83351 0.86092 0.92302 0.92284 0.98406 0.98405 0.92429 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.04 71.98 0.51 -1.31 16 2 C -0.07 -0.83 0.94 -51.46 -0.05 -0.88 16 3 C -0.14 -1.39 8.15 71.98 0.59 -0.80 16 4 C -0.11 -1.07 5.90 31.67 0.19 -0.89 16 5 C -0.12 -1.18 6.91 31.88 0.22 -0.96 16 6 C -0.14 -1.94 6.53 31.67 0.21 -1.73 16 7 C 0.15 2.26 2.52 45.72 0.12 2.38 16 8 H 0.08 1.26 6.06 -2.39 -0.01 1.24 16 9 N -0.73 -14.44 4.68 -315.57 -1.48 -15.91 16 10 C 0.26 6.68 6.65 38.20 0.25 6.94 16 11 C -0.24 -5.68 9.21 22.42 0.21 -5.48 16 12 C -0.03 -0.83 10.03 22.24 0.22 -0.60 16 13 C -0.28 -9.44 9.04 22.39 0.20 -9.23 16 14 C 0.15 5.83 6.68 22.49 0.15 5.98 16 15 O -0.34 -15.60 10.13 -92.34 -0.94 -16.53 16 16 C 0.09 4.02 4.68 71.98 0.34 4.36 16 17 C 0.03 1.61 5.34 29.85 0.16 1.77 16 18 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 19 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 22 Si 0.98 44.17 29.54 68.60 2.03 46.20 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 26 C -0.26 -8.42 9.83 22.49 0.22 -8.20 16 27 H 0.05 0.78 7.71 -2.39 -0.02 0.76 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.71 6.92 -2.39 -0.02 0.70 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.60 7.84 -2.39 -0.02 0.58 16 34 H 0.07 0.68 7.84 -2.39 -0.02 0.66 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 39 H 0.40 7.49 5.78 -92.71 -0.54 6.95 16 40 H 0.14 2.62 6.26 -2.91 -0.02 2.61 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.12 4.03 6.29 -2.91 -0.02 4.01 16 43 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 44 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 48 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.70 376.48 4.51 -63.19 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.39 Total: 20.01 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 4.22 Total: -39.56 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.19 Total: -73.30 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.94 Total: -16.53 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.70 4.51 -63.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094307467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.475 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds