Wall clock time and date at job start Tue Mar 31 2020 07:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46926 * 2 1 4 4 C 1.52998 * 109.47773 * 239.99904 * 2 1 3 5 5 C 1.52996 * 109.47261 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47381 * 60.00222 * 5 4 2 7 7 C 1.53002 * 109.46491 * 299.99870 * 6 5 4 8 8 C 1.52996 * 109.47525 * 60.00220 * 7 6 5 9 9 H 1.08998 * 109.47019 * 59.99483 * 8 7 6 10 10 N 1.46899 * 109.47460 * 179.97438 * 8 7 6 11 11 C 1.46900 * 110.99963 * 275.00329 * 10 8 7 12 12 C 1.50702 * 109.47236 * 180.02562 * 11 10 8 13 13 C 1.38324 * 119.96527 * 89.99441 * 12 11 10 14 14 C 1.38277 * 120.13375 * 179.97438 * 13 12 11 15 15 C 1.38127 * 120.07212 * 0.02562 * 14 13 12 16 16 C 1.38854 * 119.92884 * 359.97206 * 15 14 13 17 17 O 1.35748 * 120.07048 * 180.02562 * 16 15 14 18 18 C 1.34829 * 116.99824 * 354.46368 * 17 16 15 19 19 H 1.07994 * 120.00274 * 5.06465 * 18 17 16 20 20 C 1.38663 * 119.99792 * 185.05575 * 18 17 16 21 21 N 1.31554 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99532 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47501 * 90.00189 * 22 20 18 24 24 H 1.48505 * 109.46605 * 209.99762 * 22 20 18 25 25 H 1.48501 * 109.47338 * 329.99843 * 22 20 18 26 26 C 1.38072 * 119.95841 * 269.71951 * 12 11 10 27 27 H 1.08990 * 109.47458 * 300.00041 * 1 2 3 28 28 H 1.08998 * 109.47186 * 60.00806 * 1 2 3 29 29 H 1.08998 * 109.46644 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47474 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46966 * 299.99761 * 3 2 1 32 32 H 1.08995 * 109.47522 * 59.99567 * 3 2 1 33 33 H 1.09002 * 109.46381 * 299.99964 * 4 2 1 34 34 H 1.08998 * 109.47344 * 59.99386 * 4 2 1 35 35 H 1.08998 * 109.47016 * 299.99417 * 5 4 2 36 36 H 1.09003 * 109.46710 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.47189 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47000 * 59.99438 * 6 5 4 39 39 H 1.09003 * 109.46740 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47146 * 299.99479 * 7 6 5 41 41 H 1.00907 * 110.99799 * 38.95008 * 10 8 7 42 42 H 1.09006 * 109.46705 * 299.99400 * 11 10 8 43 43 H 1.08997 * 109.47213 * 59.99209 * 11 10 8 44 44 H 1.07993 * 119.93340 * 359.97438 * 13 12 11 45 45 H 1.07997 * 119.96777 * 180.02562 * 14 13 12 46 46 H 1.08000 * 120.03637 * 180.02562 * 15 14 13 47 47 H 0.97000 * 119.99425 * 179.97438 * 21 20 18 48 48 H 1.07998 * 120.03936 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2494 6 6 4.0806 -1.4415 -0.0001 7 6 3.5704 -0.7202 1.2491 8 6 2.0405 -0.7208 1.2494 9 1 1.6776 -1.7486 1.2496 10 7 1.5507 -0.0288 2.4490 11 6 1.4886 -0.9441 3.5963 12 6 0.9824 -0.2005 4.8054 13 6 -0.3750 -0.1498 5.0671 14 6 -0.8432 0.5311 6.1758 15 6 0.0436 1.1633 7.0253 16 6 1.4067 1.1142 6.7653 17 8 2.2809 1.7340 7.5986 18 6 1.7559 2.4755 8.5949 19 1 0.6876 2.4897 8.7522 20 6 2.5879 3.2195 9.4177 21 7 3.8892 3.2024 9.2259 22 14 1.8605 4.2461 10.7985 23 1 1.7818 3.4278 12.0352 24 1 2.7234 5.4299 11.0424 25 1 0.4984 4.6968 10.4156 26 6 1.8744 0.4246 5.6538 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.9330 0.3072 -1.2497 36 1 3.9334 -1.2349 -2.1391 37 1 5.1705 -1.4406 -0.0001 38 1 3.7176 -2.4693 0.0001 39 1 3.9338 -1.2340 2.1391 40 1 3.9334 0.3077 1.2488 41 1 2.1206 0.7769 2.6597 42 1 0.8124 -1.7679 3.3675 43 1 2.4841 -1.3375 3.8016 44 1 -1.0704 -0.6430 4.4041 45 1 -1.9035 0.5686 6.3778 46 1 -0.3227 1.6946 7.8913 47 1 4.4711 3.7232 9.8014 48 1 2.9343 0.3813 5.4511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094323033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:56 Heat of formation + Delta-G solvation = -44.500089 kcal Electronic energy + Delta-G solvation = -24922.292790 eV Core-core repulsion = 21554.814115 eV Total energy + Delta-G solvation = -3367.478675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98907 -40.58543 -38.45726 -35.91732 -34.28338 -34.05557 -32.34447 -30.82303 -29.65788 -28.10992 -27.45376 -26.88027 -25.56028 -23.27871 -22.87098 -22.24567 -21.81888 -19.67117 -19.21190 -18.67087 -16.79468 -16.73432 -16.44537 -16.19313 -16.06045 -15.70754 -15.54370 -15.27651 -15.01099 -14.83894 -14.37414 -14.19709 -13.96371 -13.82329 -13.68400 -13.50169 -13.10549 -12.93345 -12.73260 -12.68867 -12.45736 -12.33528 -12.24728 -12.21653 -12.15992 -12.07053 -11.99932 -11.67143 -11.20622 -11.15511 -10.97315 -10.85101 -10.78552 -9.69873 -9.17514 -8.96251 -8.46917 -6.15200 0.54014 0.77669 1.34454 1.43885 1.52023 2.17602 2.80435 3.09384 3.41576 3.53508 3.73410 3.82918 4.00028 4.07146 4.12964 4.21212 4.28893 4.34824 4.43771 4.48053 4.50397 4.57770 4.61080 4.65694 4.71692 4.76373 4.82208 4.91971 4.95394 5.05713 5.08225 5.13587 5.14407 5.18271 5.19868 5.24519 5.26745 5.33233 5.33990 5.44468 5.52526 5.66745 5.69626 5.70587 5.75155 5.82700 6.03172 6.16204 6.27367 6.43678 6.98117 7.79689 8.76513 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.002912 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.760886 B = 9613.545708 C =10168.518427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.047 4.047 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.152 4.152 8 C 0.102 3.898 9 H 0.078 0.922 10 N -0.675 5.675 11 C 0.112 3.888 12 C -0.035 4.035 13 C -0.169 4.169 14 C -0.073 4.073 15 C -0.245 4.245 16 C 0.113 3.887 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.196 4.196 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.337 0.663 42 H 0.095 0.905 43 H 0.033 0.967 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.272 0.728 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -8.729 -20.263 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.191 4.191 8 C -0.007 4.007 9 H 0.096 0.904 10 N -0.304 5.304 11 C -0.016 4.016 12 C -0.035 4.035 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.265 4.265 16 C 0.063 3.937 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.216 4.216 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.979 -8.731 -20.341 22.929 hybrid contribution 1.163 0.627 1.360 1.896 sum -4.816 -8.104 -18.981 21.193 Atomic orbital electron populations 1.21686 0.94188 1.01337 1.01363 1.20437 0.95728 0.95036 0.93540 1.21933 1.00785 0.95893 1.01426 1.21589 0.95329 1.00518 0.96841 1.21580 0.95793 1.00772 0.97597 1.21438 1.00190 0.99351 0.93944 1.22304 0.97199 1.01036 0.98584 1.21606 0.91917 0.97537 0.89681 0.90363 1.60651 1.57454 1.09192 1.03100 1.20797 0.99340 0.94352 0.87128 1.19579 0.93203 0.96086 0.94640 1.20924 0.94651 1.04226 0.99031 1.21150 0.99516 0.94865 0.93568 1.21294 0.92809 1.08397 1.03990 1.19867 0.90195 0.92893 0.90726 1.83935 1.34037 1.57898 1.38287 1.21805 0.94314 1.24952 1.07831 0.88236 1.26578 0.95582 0.98427 1.01462 1.70186 1.04426 1.41379 1.40034 0.84599 0.78400 0.77038 0.76251 1.18778 1.19573 1.17695 1.20226 0.99525 1.05733 0.96111 0.92725 0.93034 0.93038 0.92565 0.92528 0.93508 0.91627 0.91282 0.92064 0.91122 0.92051 0.91619 0.93151 0.92156 0.84520 0.88668 0.94848 0.83872 0.83877 0.86573 0.91899 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.32 71.98 0.60 -1.70 16 2 C -0.05 -0.81 0.59 -52.18 -0.03 -0.84 16 3 C -0.14 -2.69 7.51 71.98 0.54 -2.15 16 4 C -0.10 -1.47 4.73 30.59 0.14 -1.32 16 5 C -0.12 -1.65 5.65 30.59 0.17 -1.48 16 6 C -0.11 -1.71 5.92 30.60 0.18 -1.53 16 7 C -0.15 -2.90 4.90 30.59 0.15 -2.75 16 8 C 0.10 1.96 1.61 44.92 0.07 2.03 16 9 H 0.08 1.47 7.80 -2.39 -0.02 1.45 16 10 N -0.67 -16.07 4.99 -495.57 -2.47 -18.54 16 11 C 0.11 2.91 5.61 85.56 0.48 3.39 16 12 C -0.03 -1.17 5.39 -19.88 -0.11 -1.28 16 13 C -0.17 -5.38 9.70 22.30 0.22 -5.16 16 14 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 15 C -0.25 -10.92 9.17 22.39 0.21 -10.71 16 16 C 0.11 5.74 6.65 22.58 0.15 5.89 16 17 O -0.23 -14.39 9.76 -22.71 -0.22 -14.61 16 18 C -0.41 -24.46 9.49 67.92 0.64 -23.82 16 19 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 20 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 21 N -0.92 -57.28 13.67 21.62 0.30 -56.99 16 22 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 C -0.20 -8.48 9.64 22.39 0.22 -8.26 16 27 H 0.05 1.19 7.60 -2.39 -0.02 1.17 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.04 4.81 -2.38 -0.01 1.03 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.04 7.21 -2.39 -0.02 1.02 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.90 6.43 -2.39 -0.02 0.89 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 40 H 0.06 1.25 6.41 -2.39 -0.02 1.23 16 41 H 0.34 9.07 7.72 -89.69 -0.69 8.38 16 42 H 0.10 2.11 8.00 -2.38 -0.02 2.09 16 43 H 0.03 0.88 7.37 -2.39 -0.02 0.86 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 45 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 46 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -68.00 368.97 4.20 -63.80 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.25 Total: 33.76 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 4.32 Total: -52.87 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -2.18 Total: -75.53 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.00 4.20 -63.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094323033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds