Wall clock time and date at job start Tue Mar 31 2020 08:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00016 * 0.50732 * 7 6 5 9 9 C 1.50696 * 120.00209 * 179.72225 * 8 7 6 10 10 C 1.50701 * 109.47191 * 270.02548 * 9 8 7 11 11 O 1.21275 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99886 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.52999 * 109.47018 * 89.99749 * 13 12 10 15 15 C 1.46497 * 120.00299 * 180.02562 * 12 10 9 16 16 C 1.50699 * 109.47474 * 89.99412 * 15 12 10 17 17 H 1.08002 * 120.00033 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99837 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99752 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00284 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46963 * 90.00246 * 20 18 16 22 22 H 1.48496 * 109.47128 * 210.00124 * 20 18 16 23 23 H 1.48499 * 109.47188 * 330.00527 * 20 18 16 24 24 C 1.38238 * 120.00063 * 359.74632 * 8 7 6 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 8 7 26 26 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 27 27 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99924 * 180.23621 * 7 6 5 37 37 H 1.09003 * 109.47159 * 30.02324 * 9 8 7 38 38 H 1.08997 * 109.47406 * 150.02394 * 9 8 7 39 39 H 1.08997 * 109.47534 * 210.00152 * 13 12 10 40 40 H 1.09003 * 109.46847 * 330.00499 * 13 12 10 41 41 H 1.08997 * 109.47297 * 300.00548 * 14 13 12 42 42 H 1.09003 * 109.46699 * 60.00660 * 14 13 12 43 43 H 1.08999 * 109.47084 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47304 * 209.99879 * 15 12 10 45 45 H 1.09005 * 109.46791 * 329.99733 * 15 12 10 46 46 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 47 47 H 1.08000 * 120.00578 * 179.97438 * 24 8 7 48 48 H 1.07999 * 120.00165 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7649 4.8173 -1.1979 8 6 4.9947 5.4696 -0.0010 9 6 5.4980 6.8901 -0.0016 10 6 7.0050 6.8891 -0.0010 11 8 7.6107 5.8385 0.0003 12 7 7.6796 8.0559 -0.0018 13 6 6.9479 9.3251 -0.0039 14 6 6.6920 9.7686 1.4379 15 6 9.1445 8.0550 -0.0018 16 6 9.6470 8.0535 -1.4225 17 1 8.9452 8.0537 -2.2435 18 6 11.0026 8.0520 -1.6743 19 7 11.4411 8.0512 -2.9142 20 14 12.2164 8.0525 -0.2544 21 1 12.5368 6.6525 0.1234 22 1 13.4603 8.7509 -0.6668 23 1 11.6170 8.7543 0.9090 24 6 4.7634 4.8188 1.1964 25 6 4.3027 3.5155 1.1970 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1329 3.0013 -2.1325 36 1 4.9458 5.3257 -2.1334 37 1 5.1354 7.4037 -0.8920 38 1 5.1346 7.4046 0.8879 39 1 7.5378 10.0838 -0.5181 40 1 5.9958 9.1947 -0.5183 41 1 6.1021 9.0100 1.9521 42 1 7.6442 9.8990 1.9523 43 1 6.1481 10.7132 1.4363 44 1 9.5084 8.9452 0.5114 45 1 9.5073 7.1652 0.5128 46 1 12.3947 8.0505 -3.0915 47 1 4.9433 5.3282 2.1316 48 1 4.1224 3.0069 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:23 Heat of formation + Delta-G solvation = -39.834449 kcal Electronic energy + Delta-G solvation = -24204.032573 eV Core-core repulsion = 20836.756215 eV Total energy + Delta-G solvation = -3367.276358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78426 -38.68974 -36.06306 -35.30654 -33.24304 -32.61399 -30.74981 -30.48980 -30.09010 -28.00311 -26.48633 -23.83104 -22.96432 -22.57088 -22.16838 -21.32738 -20.44305 -18.30819 -16.90936 -16.46574 -16.14888 -15.99028 -15.36573 -15.18342 -14.78285 -14.42565 -14.26956 -13.86646 -13.45954 -13.33421 -13.30396 -13.21527 -13.02086 -12.68509 -12.52814 -12.25443 -12.10143 -11.93027 -11.67555 -11.50983 -11.43111 -11.35481 -11.27052 -10.95279 -10.89198 -10.70357 -10.65724 -10.62494 -10.46043 -10.13742 -9.52283 -9.03613 -8.71158 -8.57123 -8.29061 -7.68708 -6.07046 -4.05337 1.49110 1.61378 3.30130 3.36064 3.38084 3.39872 3.73413 4.06973 4.41111 4.55712 4.67596 4.84054 4.91291 4.93674 5.08757 5.13295 5.14445 5.17942 5.26902 5.31874 5.40786 5.47193 5.49549 5.54828 5.56350 5.62163 5.63730 5.72287 5.73838 5.76800 5.84665 5.88869 5.99542 6.02971 6.11367 6.15995 6.22207 6.25611 6.41003 6.57608 6.74043 6.74860 6.81698 6.97674 7.19159 7.38883 7.63621 8.29502 8.49317 8.95332 9.04040 9.53604 11.06396 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002775 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.949642 B =10088.096094 C =10766.792301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.090 4.090 6 C -0.116 4.116 7 C -0.101 4.101 8 C -0.059 4.059 9 C -0.104 4.104 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.595 5.595 13 C 0.106 3.894 14 C -0.170 4.170 15 C 0.216 3.784 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.104 4.104 25 C -0.118 4.118 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.035 0.965 46 H 0.264 0.736 47 H 0.117 0.883 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -7.095 8.275 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.059 4.059 9 C -0.144 4.144 10 C 0.296 3.704 11 O -0.408 6.408 12 N -0.327 5.327 13 C -0.018 4.018 14 C -0.228 4.228 15 C 0.096 3.904 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.122 4.122 25 C -0.136 4.136 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.440 -7.645 8.164 23.300 hybrid contribution 0.890 0.184 0.532 1.053 sum -19.550 -7.461 8.697 22.661 Atomic orbital electron populations 1.21776 0.95985 1.01437 1.01829 1.21558 0.95774 0.97013 1.02013 1.21603 0.94583 0.96498 1.02392 1.20589 0.95366 0.92944 1.02727 1.19782 0.99978 0.95924 0.93273 1.20926 1.00380 0.94733 0.97344 1.20992 0.98412 0.94866 0.97591 1.19347 0.98011 0.95080 0.93462 1.20778 0.94337 0.94909 1.04398 1.20208 0.88755 0.84080 0.77396 1.90691 1.70034 1.30877 1.49223 1.47949 1.08281 1.04535 1.71947 1.21442 0.96860 0.87268 0.96255 1.22237 1.01997 1.00802 0.97794 1.19627 0.75331 0.97202 0.98252 1.21332 0.92714 1.51137 0.91306 0.90813 1.24865 0.98167 0.94519 0.95556 1.69897 1.14479 1.50665 1.18623 0.86848 0.81006 0.78851 0.82966 1.19946 1.21093 1.19101 1.20912 0.99114 0.94907 0.97305 1.20887 1.00710 0.94756 0.97268 0.92798 0.92754 0.92911 0.92019 0.92070 0.91914 0.91850 0.91168 0.91238 0.86404 0.86200 0.88489 0.88712 0.89782 0.91351 0.92978 0.92277 0.91988 0.95347 0.94698 0.92608 0.86509 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 4 C -0.08 -0.77 5.35 -27.88 -0.15 -0.92 16 5 C -0.09 -1.12 5.13 -104.62 -0.54 -1.66 16 6 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 7 C -0.10 -1.51 9.70 -39.58 -0.38 -1.90 16 8 C -0.06 -0.90 4.37 -104.63 -0.46 -1.36 16 9 C -0.10 -1.55 4.38 -29.04 -0.13 -1.67 16 10 C 0.51 10.45 7.67 -10.99 -0.08 10.37 16 11 O -0.53 -13.43 15.61 5.56 0.09 -13.34 16 12 N -0.60 -12.22 2.46 -175.06 -0.43 -12.65 16 13 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 14 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 15 C 0.22 5.35 4.23 -5.20 -0.02 5.33 16 16 C -0.53 -15.27 9.94 -34.44 -0.34 -15.62 16 17 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 21 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 25 C -0.12 -1.52 9.70 -39.58 -0.38 -1.91 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.10 1.27 7.34 -51.93 -0.38 0.88 16 38 H 0.09 1.14 7.13 -51.93 -0.37 0.77 16 39 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 41 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 45 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -34.66 391.04 -9.80 -44.47 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.53 Total: -0.37 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.93 Total: -14.02 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.34 Total: -39.84 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.66 -9.80 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.633 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds