Wall clock time and date at job start Tue Mar 31 2020 08:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00016 * 0.50732 * 7 6 5 9 9 C 1.50696 * 120.00209 * 179.72225 * 8 7 6 10 10 C 1.50701 * 109.47191 * 270.02548 * 9 8 7 11 11 O 1.21275 * 120.00267 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99886 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.52999 * 109.47018 * 89.99749 * 13 12 10 15 15 C 1.46497 * 120.00299 * 180.02562 * 12 10 9 16 16 C 1.50699 * 109.47474 * 89.99412 * 15 12 10 17 17 H 1.08002 * 120.00033 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99837 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99752 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00284 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46963 * 90.00246 * 20 18 16 22 22 H 1.48496 * 109.47128 * 210.00124 * 20 18 16 23 23 H 1.48499 * 109.47188 * 330.00527 * 20 18 16 24 24 C 1.38238 * 120.00063 * 359.74632 * 8 7 6 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 8 7 26 26 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 27 27 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99924 * 180.23621 * 7 6 5 37 37 H 1.09003 * 109.47159 * 30.02324 * 9 8 7 38 38 H 1.08997 * 109.47406 * 150.02394 * 9 8 7 39 39 H 1.08997 * 109.47534 * 210.00152 * 13 12 10 40 40 H 1.09003 * 109.46847 * 330.00499 * 13 12 10 41 41 H 1.08997 * 109.47297 * 300.00548 * 14 13 12 42 42 H 1.09003 * 109.46699 * 60.00660 * 14 13 12 43 43 H 1.08999 * 109.47084 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47304 * 209.99879 * 15 12 10 45 45 H 1.09005 * 109.46791 * 329.99733 * 15 12 10 46 46 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 47 47 H 1.08000 * 120.00578 * 179.97438 * 24 8 7 48 48 H 1.07999 * 120.00165 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7649 4.8173 -1.1979 8 6 4.9947 5.4696 -0.0010 9 6 5.4980 6.8901 -0.0016 10 6 7.0050 6.8891 -0.0010 11 8 7.6107 5.8385 0.0003 12 7 7.6796 8.0559 -0.0018 13 6 6.9479 9.3251 -0.0039 14 6 6.6920 9.7686 1.4379 15 6 9.1445 8.0550 -0.0018 16 6 9.6470 8.0535 -1.4225 17 1 8.9452 8.0537 -2.2435 18 6 11.0026 8.0520 -1.6743 19 7 11.4411 8.0512 -2.9142 20 14 12.2164 8.0525 -0.2544 21 1 12.5368 6.6525 0.1234 22 1 13.4603 8.7509 -0.6668 23 1 11.6170 8.7543 0.9090 24 6 4.7634 4.8188 1.1964 25 6 4.3027 3.5155 1.1970 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1329 3.0013 -2.1325 36 1 4.9458 5.3257 -2.1334 37 1 5.1354 7.4037 -0.8920 38 1 5.1346 7.4046 0.8879 39 1 7.5378 10.0838 -0.5181 40 1 5.9958 9.1947 -0.5183 41 1 6.1021 9.0100 1.9521 42 1 7.6442 9.8990 1.9523 43 1 6.1481 10.7132 1.4363 44 1 9.5084 8.9452 0.5114 45 1 9.5073 7.1652 0.5128 46 1 12.3947 8.0505 -3.0915 47 1 4.9433 5.3282 2.1316 48 1 4.1224 3.0069 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:22 Heat of formation + Delta-G solvation = -58.608135 kcal Electronic energy + Delta-G solvation = -24204.846661 eV Core-core repulsion = 20836.756215 eV Total energy + Delta-G solvation = -3368.090446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10163 -39.97152 -37.07000 -36.66412 -34.91813 -34.06226 -31.96429 -31.78649 -31.12412 -29.56942 -27.69455 -24.94173 -24.33601 -23.67638 -23.61322 -22.00602 -21.46900 -19.84420 -19.11367 -17.96421 -17.45568 -16.90685 -16.70348 -16.33717 -16.03760 -15.81706 -15.41800 -14.93761 -14.79740 -14.69573 -14.45251 -14.28020 -14.11373 -13.89284 -13.74509 -13.49894 -13.40674 -13.22766 -12.94193 -12.87010 -12.56578 -12.39254 -12.29379 -12.16862 -12.03544 -11.95836 -11.86878 -11.75280 -11.73628 -11.46479 -11.37055 -10.84631 -10.68041 -9.76875 -9.40465 -9.35778 -8.35349 -6.39903 0.42670 0.55448 1.30176 1.34556 1.42882 1.83416 2.29138 2.33363 2.90072 2.98997 3.71103 3.83764 3.88765 3.95431 4.09635 4.13315 4.18220 4.23821 4.31001 4.38688 4.43265 4.54248 4.55970 4.64510 4.65640 4.77115 4.80596 4.82309 4.85417 4.91973 4.99052 4.99729 5.01832 5.03244 5.16090 5.21869 5.23526 5.33084 5.40488 5.40809 5.46859 5.52157 5.53873 5.67277 5.72877 5.75766 6.16532 6.23736 6.61083 6.73916 7.20871 7.46008 8.81610 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002775 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.949642 B =10088.096094 C =10766.792301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.076 4.076 5 C -0.090 4.090 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.082 4.082 9 C -0.089 4.089 10 C 0.500 3.500 11 O -0.590 6.590 12 N -0.602 5.602 13 C 0.097 3.903 14 C -0.161 4.161 15 C 0.226 3.774 16 C -0.533 4.533 17 H 0.028 0.972 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.273 1.273 23 H -0.238 1.238 24 C -0.114 4.114 25 C -0.124 4.124 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.015 0.985 46 H 0.268 0.732 47 H 0.131 0.869 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.496 -6.895 10.708 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.090 4.090 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.082 4.082 9 C -0.128 4.128 10 C 0.289 3.711 11 O -0.471 6.471 12 N -0.333 5.333 13 C -0.025 4.025 14 C -0.219 4.219 15 C 0.103 3.897 16 C -0.572 4.572 17 H 0.046 0.954 18 C -0.189 4.189 19 N -0.585 5.585 20 Si 0.771 3.229 21 H -0.204 1.204 22 H -0.198 1.198 23 H -0.161 1.161 24 C -0.132 4.132 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.149 0.851 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.028 -7.396 10.606 25.542 hybrid contribution 1.293 0.081 -0.327 1.337 sum -20.735 -7.315 10.279 24.271 Atomic orbital electron populations 1.21778 0.95480 1.01943 1.01852 1.21543 0.96207 0.96109 1.02321 1.21540 0.93416 0.97340 1.02159 1.20631 0.96292 0.91156 1.03297 1.20139 0.98874 0.97146 0.92842 1.21178 1.00371 0.94439 0.98592 1.21165 0.99457 0.95847 0.97647 1.19504 0.99129 0.95594 0.94009 1.20748 0.89554 0.95672 1.06863 1.21227 0.91095 0.83022 0.75711 1.90650 1.71715 1.32893 1.51805 1.48086 1.06921 1.06761 1.71556 1.21794 0.97226 0.84577 0.98933 1.22162 1.01960 1.02711 0.95032 1.19263 0.78458 0.96820 0.95133 1.21563 0.92364 1.50850 0.92428 0.95381 1.25869 1.00442 0.93972 0.98624 1.70049 1.15218 1.52047 1.21209 0.85715 0.78413 0.78893 0.79927 1.20389 1.19840 1.16147 1.21187 0.98979 0.95598 0.97478 1.21232 1.00028 0.94536 0.98418 0.92653 0.92884 0.92195 0.91908 0.91590 0.91894 0.92350 0.90925 0.90351 0.85076 0.86722 0.86700 0.85173 0.91122 0.88424 0.91756 0.93645 0.88719 0.93458 0.96731 0.92298 0.85095 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.11 -1.60 5.20 30.59 0.16 -1.44 16 4 C -0.08 -1.36 5.35 29.85 0.16 -1.20 16 5 C -0.09 -2.16 5.13 -19.86 -0.10 -2.26 16 6 C -0.13 -3.43 9.70 22.27 0.22 -3.21 16 7 C -0.12 -3.75 9.70 22.27 0.22 -3.53 16 8 C -0.08 -2.46 4.37 -19.87 -0.09 -2.55 16 9 C -0.09 -2.51 4.38 29.10 0.13 -2.39 16 10 C 0.50 20.55 7.67 87.66 0.67 21.22 16 11 O -0.59 -30.67 15.61 -3.01 -0.05 -30.72 16 12 N -0.60 -24.58 2.46 -826.15 -2.03 -26.61 16 13 C 0.10 2.80 5.93 86.38 0.51 3.31 16 14 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 15 C 0.23 11.24 4.23 85.63 0.36 11.60 16 16 C -0.53 -32.03 9.94 25.60 0.25 -31.78 16 17 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 18 C 0.01 0.53 5.47 84.65 0.46 0.99 16 19 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 20 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 24 C -0.11 -3.10 9.70 22.27 0.22 -2.88 16 25 C -0.12 -3.01 9.70 22.27 0.22 -2.80 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 34 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.11 2.80 7.34 -2.39 -0.02 2.78 16 38 H 0.13 2.70 7.13 -2.39 -0.02 2.69 16 39 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 40 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 41 H 0.06 1.24 7.22 -2.39 -0.02 1.22 16 42 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 2.17 7.13 -2.39 -0.02 2.15 16 45 H 0.01 0.79 6.85 -2.38 -0.02 0.77 16 46 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 47 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 48 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -79.31 391.04 5.97 -73.34 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.84 Total: 19.07 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.02 Total: -22.00 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -1.73 Total: -87.02 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -79.31 5.97 -73.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.735 kcal (2) G-P(sol) polarization free energy of solvation -79.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds