Wall clock time and date at job start Tue Mar 31 2020 08:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53005 * 109.46990 * 173.59200 * 3 2 1 5 5 C 1.52999 * 109.47222 * 202.20005 * 4 3 2 6 6 C 1.52998 * 109.47154 * 293.59082 * 3 2 1 7 7 N 1.46496 * 109.47202 * 176.17415 * 6 3 2 8 8 C 1.46488 * 120.00438 * 284.87730 * 7 6 3 9 9 C 1.50704 * 109.47257 * 274.40176 * 8 7 6 10 10 H 1.07995 * 120.00244 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99939 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46924 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46963 * 120.00103 * 13 11 9 16 16 H 1.48496 * 109.47063 * 240.00341 * 13 11 9 17 17 C 1.34784 * 119.99433 * 104.87795 * 7 6 3 18 18 O 1.21551 * 119.99650 * 186.63452 * 17 7 6 19 19 C 1.47846 * 120.00225 * 6.63659 * 17 7 6 20 20 C 1.39588 * 120.14348 * 49.39888 * 19 17 7 21 21 C 1.37933 * 119.85307 * 179.72400 * 20 19 17 22 22 C 1.38383 * 120.14638 * 0.27208 * 21 20 19 23 23 C 1.38343 * 120.28697 * 0.02562 * 22 21 20 24 24 C 1.37977 * 120.14802 * 0.02562 * 23 22 21 25 25 C 1.50698 * 120.07492 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46832 * 65.83798 * 1 2 3 27 27 H 1.08995 * 109.46975 * 185.83750 * 1 2 3 28 28 H 1.09003 * 109.47094 * 305.83683 * 1 2 3 29 29 H 1.08998 * 109.47479 * 239.99499 * 2 1 3 30 30 H 1.09010 * 109.46771 * 119.99721 * 2 1 3 31 31 H 1.08999 * 109.47242 * 53.59653 * 3 2 1 32 32 H 1.08994 * 109.47056 * 322.20448 * 4 3 2 33 33 H 1.08999 * 109.46878 * 82.20174 * 4 3 2 34 34 H 1.09004 * 109.46875 * 299.35671 * 5 4 3 35 35 H 1.09005 * 109.46949 * 59.35314 * 5 4 3 36 36 H 1.08995 * 109.47339 * 179.35234 * 5 4 3 37 37 H 1.09006 * 109.46984 * 56.17371 * 6 3 2 38 38 H 1.09002 * 109.47158 * 296.17881 * 6 3 2 39 39 H 1.09006 * 109.47009 * 34.39834 * 8 7 6 40 40 H 1.09001 * 109.47716 * 154.40278 * 8 7 6 41 41 H 0.96999 * 119.99759 * 179.97438 * 12 11 9 42 42 H 1.08006 * 120.07777 * 359.97438 * 20 19 17 43 43 H 1.08003 * 119.93271 * 180.25089 * 21 20 19 44 44 H 1.07998 * 119.85864 * 179.97438 * 22 21 20 45 45 H 1.08003 * 119.92611 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47097 * 84.79815 * 25 24 23 47 47 H 1.08996 * 109.47312 * 204.79905 * 25 24 23 48 48 H 1.09003 * 109.47053 * 324.80124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5616 1.4455 0.1610 5 6 4.0140 2.8014 0.7066 6 6 1.6657 2.1158 -1.3219 7 7 2.0731 3.5225 -1.2860 8 6 1.3003 4.4891 -0.5021 9 6 0.1530 5.0058 -1.3315 10 1 0.0136 4.6500 -2.3416 11 6 -0.7189 5.9327 -0.8006 12 7 -0.5495 6.3656 0.4297 13 14 -2.1406 6.5737 -1.8289 14 1 -2.1106 5.9335 -3.1686 15 1 -3.4239 6.2507 -1.1551 16 1 -2.0178 8.0458 -1.9803 17 6 3.1589 3.9274 -1.9742 18 8 3.5678 5.0653 -1.8498 19 6 3.8526 2.9875 -2.8805 20 6 3.1250 2.2501 -3.8162 21 6 3.7790 1.3792 -4.6626 22 6 5.1525 1.2314 -4.5819 23 6 5.8787 1.9546 -3.6526 24 6 5.2366 2.8284 -2.7993 25 6 6.0292 3.6150 -1.7873 26 1 -0.3633 0.4206 -0.9376 27 1 -0.3633 -1.0223 0.1045 28 1 -0.3633 0.6017 0.8331 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5861 1.9884 0.8271 32 1 3.8550 0.6582 0.8553 33 1 4.0297 1.2690 -0.8074 34 1 3.7307 3.5875 0.0067 35 1 3.5369 2.9830 1.6697 36 1 5.0967 2.7996 0.8322 37 1 0.5874 2.0533 -1.4689 38 1 2.1742 1.6111 -2.1435 39 1 0.9117 4.0032 0.3929 40 1 1.9436 5.3205 -0.2140 41 1 -1.1627 7.0179 0.8029 42 1 2.0529 2.3643 -3.8801 43 1 3.2178 0.8111 -5.3898 44 1 5.6597 0.5479 -5.2466 45 1 6.9504 1.8344 -3.5944 46 1 6.4199 4.5188 -2.2548 47 1 5.3836 3.8877 -0.9526 48 1 6.8574 3.0074 -1.4227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104542845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:43 Heat of formation + Delta-G solvation = -24.435831 kcal Electronic energy + Delta-G solvation = -26754.132588 eV Core-core repulsion = 23387.523964 eV Total energy + Delta-G solvation = -3366.608624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33821 -38.16605 -36.85654 -34.15565 -32.69947 -32.54720 -31.60944 -31.03280 -28.06971 -27.13860 -26.65915 -24.43850 -23.71507 -22.40806 -21.73225 -21.16739 -19.90544 -18.71770 -16.98931 -16.51683 -15.84607 -15.64300 -15.49045 -14.79623 -14.50659 -14.24788 -13.90608 -13.70540 -13.33787 -13.25871 -13.05911 -12.98226 -12.63800 -12.43548 -12.34795 -12.06987 -11.87895 -11.77064 -11.37090 -11.28814 -11.21022 -11.20716 -10.93289 -10.87517 -10.68843 -10.57535 -10.34530 -10.32051 -10.14221 -10.03495 -9.51079 -9.03283 -8.65565 -8.53800 -8.43369 -7.55118 -6.05042 -4.10034 1.22609 1.45032 3.28612 3.34220 3.37211 3.41161 3.84923 4.02161 4.43963 4.89941 4.94674 4.98938 5.01667 5.09700 5.10596 5.28945 5.30470 5.40590 5.48959 5.56996 5.66854 5.71873 5.74255 5.78600 5.85807 5.89236 5.95183 6.02431 6.02845 6.10766 6.17129 6.26945 6.32199 6.33504 6.35970 6.45875 6.49771 6.52167 6.57442 6.67282 6.70198 6.85359 7.01339 7.13989 7.46039 7.55068 7.91529 8.22775 8.41555 8.87718 9.05828 9.55187 11.02691 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005698 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.406527 B = 4912.775787 C = 5568.111466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.108 4.108 4 C -0.112 4.112 5 C -0.169 4.169 6 C 0.104 3.896 7 N -0.584 5.584 8 C 0.246 3.754 9 C -0.528 4.528 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.554 3.446 18 O -0.537 6.537 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.039 4.039 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.262 0.738 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -14.857 -4.468 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.127 4.127 4 C -0.149 4.149 5 C -0.226 4.226 6 C -0.020 4.020 7 N -0.315 5.315 8 C 0.127 3.873 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.341 3.659 18 O -0.416 6.416 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.040 4.040 25 C -0.182 4.182 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.384 -14.104 -4.235 17.462 hybrid contribution -0.977 0.336 -0.567 1.179 sum 8.407 -13.768 -4.802 16.831 Atomic orbital electron populations 1.21832 0.95782 1.00947 1.02654 1.21505 0.95977 0.96104 1.01444 1.21668 0.95789 0.95659 0.99589 1.21522 0.95256 0.97510 1.00642 1.22229 0.99700 0.98509 1.02152 1.21898 1.01079 0.82070 0.96971 1.48156 1.26514 1.09035 1.47748 1.19280 0.90222 0.87367 0.90400 1.21471 1.10791 1.24378 1.00037 0.92446 1.24916 0.97939 0.96061 0.95036 1.69943 1.37706 1.31271 1.14200 0.86482 0.81960 0.78876 0.80341 1.19820 1.20963 1.20892 1.18076 0.80550 0.86943 0.80334 1.90765 1.65688 1.19794 1.65340 1.20146 0.93844 0.98677 0.98922 1.21339 1.00132 0.94657 0.94532 1.21023 0.94652 0.99777 0.99756 1.21185 0.94219 0.99023 0.98108 1.20938 0.99710 0.97700 0.96487 1.19905 0.92313 0.95515 0.96226 1.21032 0.99536 0.99190 0.98401 0.92273 0.93349 0.92383 0.92319 0.92252 0.90252 0.92828 0.92421 0.90139 0.93014 0.93762 0.90440 0.90308 0.94947 0.93517 0.92783 0.85254 0.85890 0.86166 0.85945 0.90660 0.89902 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.56 37.16 0.36 -1.52 16 2 C -0.11 -1.35 5.34 -26.73 -0.14 -1.50 16 3 C -0.11 -1.60 2.03 -90.62 -0.18 -1.78 16 4 C -0.11 -1.59 5.31 -26.73 -0.14 -1.74 16 5 C -0.17 -2.74 8.30 37.16 0.31 -2.43 16 6 C 0.10 1.73 4.28 -4.04 -0.02 1.72 16 7 N -0.58 -12.15 1.31 -176.18 -0.23 -12.38 16 8 C 0.25 6.30 4.82 -5.20 -0.03 6.27 16 9 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 13 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.55 11.63 3.98 -12.33 -0.05 11.59 16 18 O -0.54 -13.40 14.88 5.32 0.08 -13.32 16 19 C -0.11 -1.92 4.16 -104.97 -0.44 -2.36 16 20 C -0.09 -1.30 7.37 -39.19 -0.29 -1.59 16 21 C -0.13 -1.60 10.03 -39.64 -0.40 -2.00 16 22 C -0.11 -1.19 10.04 -39.49 -0.40 -1.58 16 23 C -0.13 -1.58 9.71 -39.64 -0.38 -1.97 16 24 C -0.04 -0.58 5.58 -104.23 -0.58 -1.16 16 25 C -0.13 -1.82 9.18 36.00 0.33 -1.49 16 26 H 0.06 0.74 6.81 -51.93 -0.35 0.39 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.66 7.99 -51.92 -0.41 0.25 16 31 H 0.08 1.35 7.10 -51.93 -0.37 0.98 16 32 H 0.05 0.68 7.84 -51.93 -0.41 0.27 16 33 H 0.06 0.83 6.69 -51.93 -0.35 0.48 16 34 H 0.08 1.55 2.59 -51.93 -0.13 1.41 16 35 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 37 H 0.08 1.35 6.58 -51.93 -0.34 1.00 16 38 H 0.08 1.18 4.12 -51.93 -0.21 0.97 16 39 H 0.03 0.85 7.26 -51.93 -0.38 0.47 16 40 H 0.05 1.36 7.22 -51.93 -0.37 0.98 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 1.91 7.31 -52.48 -0.38 1.53 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.39 3.68 -51.93 -0.19 1.20 16 48 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -31.37 366.82 -9.03 -40.40 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.65 Total: 3.50 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.47 Total: -14.88 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.51 Total: -37.89 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.37 -9.03 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104542845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.968 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds