Wall clock time and date at job start Tue Mar 31 2020 08:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53005 * 109.46990 * 173.59200 * 3 2 1 5 5 C 1.52999 * 109.47222 * 202.20005 * 4 3 2 6 6 C 1.52998 * 109.47154 * 293.59082 * 3 2 1 7 7 N 1.46496 * 109.47202 * 176.17415 * 6 3 2 8 8 C 1.46488 * 120.00438 * 284.87730 * 7 6 3 9 9 C 1.50704 * 109.47257 * 274.40176 * 8 7 6 10 10 H 1.07995 * 120.00244 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99939 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46924 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46963 * 120.00103 * 13 11 9 16 16 H 1.48496 * 109.47063 * 240.00341 * 13 11 9 17 17 C 1.34784 * 119.99433 * 104.87795 * 7 6 3 18 18 O 1.21551 * 119.99650 * 186.63452 * 17 7 6 19 19 C 1.47846 * 120.00225 * 6.63659 * 17 7 6 20 20 C 1.39588 * 120.14348 * 49.39888 * 19 17 7 21 21 C 1.37933 * 119.85307 * 179.72400 * 20 19 17 22 22 C 1.38383 * 120.14638 * 0.27208 * 21 20 19 23 23 C 1.38343 * 120.28697 * 0.02562 * 22 21 20 24 24 C 1.37977 * 120.14802 * 0.02562 * 23 22 21 25 25 C 1.50698 * 120.07492 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46832 * 65.83798 * 1 2 3 27 27 H 1.08995 * 109.46975 * 185.83750 * 1 2 3 28 28 H 1.09003 * 109.47094 * 305.83683 * 1 2 3 29 29 H 1.08998 * 109.47479 * 239.99499 * 2 1 3 30 30 H 1.09010 * 109.46771 * 119.99721 * 2 1 3 31 31 H 1.08999 * 109.47242 * 53.59653 * 3 2 1 32 32 H 1.08994 * 109.47056 * 322.20448 * 4 3 2 33 33 H 1.08999 * 109.46878 * 82.20174 * 4 3 2 34 34 H 1.09004 * 109.46875 * 299.35671 * 5 4 3 35 35 H 1.09005 * 109.46949 * 59.35314 * 5 4 3 36 36 H 1.08995 * 109.47339 * 179.35234 * 5 4 3 37 37 H 1.09006 * 109.46984 * 56.17371 * 6 3 2 38 38 H 1.09002 * 109.47158 * 296.17881 * 6 3 2 39 39 H 1.09006 * 109.47009 * 34.39834 * 8 7 6 40 40 H 1.09001 * 109.47716 * 154.40278 * 8 7 6 41 41 H 0.96999 * 119.99759 * 179.97438 * 12 11 9 42 42 H 1.08006 * 120.07777 * 359.97438 * 20 19 17 43 43 H 1.08003 * 119.93271 * 180.25089 * 21 20 19 44 44 H 1.07998 * 119.85864 * 179.97438 * 22 21 20 45 45 H 1.08003 * 119.92611 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47097 * 84.79815 * 25 24 23 47 47 H 1.08996 * 109.47312 * 204.79905 * 25 24 23 48 48 H 1.09003 * 109.47053 * 324.80124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5616 1.4455 0.1610 5 6 4.0140 2.8014 0.7066 6 6 1.6657 2.1158 -1.3219 7 7 2.0731 3.5225 -1.2860 8 6 1.3003 4.4891 -0.5021 9 6 0.1530 5.0058 -1.3315 10 1 0.0136 4.6500 -2.3416 11 6 -0.7189 5.9327 -0.8006 12 7 -0.5495 6.3656 0.4297 13 14 -2.1406 6.5737 -1.8289 14 1 -2.1106 5.9335 -3.1686 15 1 -3.4239 6.2507 -1.1551 16 1 -2.0178 8.0458 -1.9803 17 6 3.1589 3.9274 -1.9742 18 8 3.5678 5.0653 -1.8498 19 6 3.8526 2.9875 -2.8805 20 6 3.1250 2.2501 -3.8162 21 6 3.7790 1.3792 -4.6626 22 6 5.1525 1.2314 -4.5819 23 6 5.8787 1.9546 -3.6526 24 6 5.2366 2.8284 -2.7993 25 6 6.0292 3.6150 -1.7873 26 1 -0.3633 0.4206 -0.9376 27 1 -0.3633 -1.0223 0.1045 28 1 -0.3633 0.6017 0.8331 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5861 1.9884 0.8271 32 1 3.8550 0.6582 0.8553 33 1 4.0297 1.2690 -0.8074 34 1 3.7307 3.5875 0.0067 35 1 3.5369 2.9830 1.6697 36 1 5.0967 2.7996 0.8322 37 1 0.5874 2.0533 -1.4689 38 1 2.1742 1.6111 -2.1435 39 1 0.9117 4.0032 0.3929 40 1 1.9436 5.3205 -0.2140 41 1 -1.1627 7.0179 0.8029 42 1 2.0529 2.3643 -3.8801 43 1 3.2178 0.8111 -5.3898 44 1 5.6597 0.5479 -5.2466 45 1 6.9504 1.8344 -3.5944 46 1 6.4199 4.5188 -2.2548 47 1 5.3836 3.8877 -0.9526 48 1 6.8574 3.0074 -1.4227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104542845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:43 Heat of formation + Delta-G solvation = -40.389713 kcal Electronic energy + Delta-G solvation = -26754.824400 eV Core-core repulsion = 23387.523964 eV Total energy + Delta-G solvation = -3367.300436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73097 -39.38155 -38.28701 -35.86493 -34.54808 -33.74706 -32.77434 -32.27794 -29.72939 -28.60051 -27.92467 -25.73156 -25.46593 -23.75994 -22.86392 -22.36840 -21.15201 -20.15475 -18.64108 -18.35220 -17.35784 -17.06607 -16.78053 -16.32367 -15.75571 -15.71541 -15.12616 -14.86727 -14.65457 -14.51827 -14.42401 -14.21468 -14.08318 -13.97358 -13.54060 -13.45672 -13.32710 -13.08500 -12.95881 -12.83066 -12.62780 -12.46034 -12.39548 -12.33264 -12.23960 -11.94016 -11.90860 -11.71223 -11.45830 -11.37121 -11.25676 -10.66644 -10.63472 -9.77608 -9.59914 -9.27060 -8.23541 -6.39321 0.12628 0.44382 1.33939 1.36183 1.47989 1.89773 2.27523 2.43128 2.85072 3.05376 3.64130 3.80062 3.92260 3.94459 3.96197 4.14605 4.21553 4.39749 4.40509 4.43366 4.51735 4.58176 4.60189 4.62149 4.74816 4.77093 4.80359 4.83051 4.90185 5.00028 5.07065 5.08246 5.12228 5.16484 5.21749 5.22963 5.25048 5.31030 5.46061 5.47113 5.49836 5.54257 5.56288 5.60325 5.65259 5.85418 6.04972 6.05694 6.68984 6.77109 7.25176 7.43600 8.83210 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005698 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.406527 B = 4912.775787 C = 5568.111466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.104 4.104 4 C -0.102 4.102 5 C -0.167 4.167 6 C 0.103 3.897 7 N -0.585 5.585 8 C 0.270 3.730 9 C -0.545 4.545 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.966 3.034 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.282 1.282 17 C 0.553 3.447 18 O -0.594 6.594 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.052 4.052 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.016 0.984 40 H -0.002 1.002 41 H 0.267 0.733 42 H 0.120 0.880 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.154 0.846 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -18.492 -7.026 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.141 4.141 3 C -0.124 4.124 4 C -0.139 4.139 5 C -0.225 4.225 6 C -0.019 4.019 7 N -0.314 5.314 8 C 0.148 3.852 9 C -0.583 4.583 10 H 0.072 0.928 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.208 1.208 17 C 0.343 3.657 18 O -0.476 6.476 19 C -0.143 4.143 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.141 4.141 24 C -0.052 4.052 25 C -0.181 4.181 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.034 0.966 40 H 0.016 0.984 41 H 0.076 0.924 42 H 0.138 0.862 43 H 0.174 0.826 44 H 0.181 0.819 45 H 0.172 0.828 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.324 -17.790 -6.799 21.663 hybrid contribution -1.183 1.450 0.214 1.884 sum 9.141 -16.340 -6.584 19.847 Atomic orbital electron populations 1.21833 0.96076 1.01960 1.01388 1.21465 0.95649 0.93762 1.03228 1.21623 0.96407 0.97262 0.97091 1.21466 0.94430 0.96636 1.01401 1.22188 1.00592 0.99100 1.00603 1.22122 1.00648 0.79973 0.99151 1.48044 1.26355 1.09932 1.47081 1.18611 0.89199 0.86926 0.90418 1.21745 1.11601 1.24934 1.00035 0.92780 1.25846 1.00761 0.96104 0.96230 1.70071 1.38896 1.31789 1.15890 0.85387 0.78699 0.77955 0.78900 1.18974 1.19392 1.20750 1.18779 0.79926 0.86997 0.79960 1.90708 1.67139 1.22523 1.67244 1.19850 0.94844 0.99819 0.99784 1.21362 0.99866 0.95655 0.95221 1.21384 0.95468 0.98378 0.98909 1.21696 0.93772 0.98119 0.97255 1.21298 1.01328 0.96174 0.95336 1.20031 0.91395 0.96575 0.97246 1.20999 0.99959 0.99543 0.97590 0.93122 0.90933 0.94342 0.90230 0.90577 0.93504 0.90252 0.91768 0.93343 0.94456 0.92232 0.91583 0.87771 0.96563 0.98381 0.92432 0.86206 0.82629 0.81933 0.82822 0.91664 0.92918 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.56 71.98 0.69 -2.94 16 2 C -0.10 -2.29 5.34 30.59 0.16 -2.13 16 3 C -0.10 -3.14 2.03 -10.79 -0.02 -3.17 16 4 C -0.10 -2.85 5.31 30.60 0.16 -2.68 16 5 C -0.17 -5.75 8.30 71.98 0.60 -5.15 16 6 C 0.10 3.57 4.28 86.38 0.37 3.94 16 7 N -0.59 -26.13 1.31 -829.58 -1.08 -27.21 16 8 C 0.27 15.05 4.82 85.64 0.41 15.46 16 9 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 10 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 11 C 0.01 0.57 5.46 84.66 0.46 1.03 16 12 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 13 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 17 C 0.55 24.78 3.98 86.79 0.35 25.13 16 18 O -0.59 -32.31 14.88 -3.88 -0.06 -32.37 16 19 C -0.14 -4.78 4.16 -20.09 -0.08 -4.86 16 20 C -0.10 -2.87 7.37 22.52 0.17 -2.71 16 21 C -0.12 -2.40 10.03 22.23 0.22 -2.18 16 22 C -0.09 -1.49 10.04 22.33 0.22 -1.27 16 23 C -0.12 -2.47 9.71 22.23 0.22 -2.26 16 24 C -0.05 -1.48 5.58 -19.61 -0.11 -1.58 16 25 C -0.12 -3.64 9.18 71.24 0.65 -2.99 16 26 H 0.05 1.25 6.81 -2.39 -0.02 1.23 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.48 7.99 -2.38 -0.02 1.46 16 31 H 0.05 1.71 7.10 -2.39 -0.02 1.69 16 32 H 0.08 1.82 7.84 -2.39 -0.02 1.80 16 33 H 0.06 1.74 6.69 -2.39 -0.02 1.72 16 34 H 0.05 2.02 2.59 -2.38 -0.01 2.01 16 35 H 0.04 1.32 8.11 -2.38 -0.02 1.30 16 36 H 0.06 1.79 7.69 -2.39 -0.02 1.77 16 37 H 0.07 2.40 6.58 -2.38 -0.02 2.38 16 38 H 0.10 3.07 4.12 -2.39 -0.01 3.06 16 39 H 0.02 0.94 7.26 -2.38 -0.02 0.93 16 40 H 0.00 -0.13 7.22 -2.39 -0.02 -0.14 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 42 H 0.12 3.50 7.31 -2.91 -0.02 3.48 16 43 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.05 1.87 3.68 -2.39 -0.01 1.86 16 48 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 Total: -1.00 -75.42 366.82 6.82 -68.61 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.94 Total: 20.39 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.71 Total: -20.16 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -0.80 Total: -84.07 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.06 Total: -32.37 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.42 6.82 -68.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104542845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.215 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds