Wall clock time and date at job start Tue Mar 31 2020 08:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 C 1.52997 * 109.46742 * 65.00219 * 3 2 1 5 5 C 1.53008 * 109.47010 * 186.63870 * 4 3 2 6 6 C 1.53002 * 109.47038 * 184.99898 * 3 2 1 7 7 N 1.46500 * 109.47026 * 62.14132 * 6 3 2 8 8 C 1.46501 * 119.99673 * 83.65047 * 7 6 3 9 9 C 1.50699 * 109.47151 * 118.20756 * 8 7 6 10 10 H 1.08002 * 119.99840 * 125.01494 * 9 8 7 11 11 C 1.37881 * 120.00173 * 305.01600 * 9 8 7 12 12 N 1.31515 * 119.99784 * 4.45400 * 11 9 8 13 13 Si 1.86799 * 119.99980 * 184.45000 * 11 9 8 14 14 H 1.48504 * 109.47395 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47057 * 120.00271 * 13 11 9 16 16 H 1.48501 * 109.47191 * 240.00414 * 13 11 9 17 17 C 1.34771 * 120.00568 * 263.65035 * 7 6 3 18 18 O 1.21549 * 119.99926 * 16.05789 * 17 7 6 19 19 C 1.47843 * 120.00169 * 196.05993 * 17 7 6 20 20 C 1.39597 * 120.14648 * 336.27129 * 19 17 7 21 21 C 1.37932 * 119.85529 * 179.78810 * 20 19 17 22 22 C 1.38386 * 120.14487 * 0.49535 * 21 20 19 23 23 C 1.38342 * 120.29138 * 359.73739 * 22 21 20 24 24 C 1.50695 * 119.92737 * 180.02562 * 23 22 21 25 25 C 1.37979 * 120.14479 * 0.02562 * 23 22 21 26 26 H 1.08998 * 109.47386 * 299.99753 * 1 2 3 27 27 H 1.08997 * 109.47031 * 60.00070 * 1 2 3 28 28 H 1.09004 * 109.46814 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47386 * 240.00247 * 2 1 3 30 30 H 1.08997 * 109.47031 * 119.99930 * 2 1 3 31 31 H 1.08999 * 109.47336 * 304.99615 * 3 2 1 32 32 H 1.09002 * 109.47444 * 306.63616 * 4 3 2 33 33 H 1.08995 * 109.47697 * 66.64196 * 4 3 2 34 34 H 1.08993 * 109.47156 * 184.02728 * 5 4 3 35 35 H 1.09004 * 109.46956 * 304.03003 * 5 4 3 36 36 H 1.09003 * 109.46876 * 64.02655 * 5 4 3 37 37 H 1.09004 * 109.47061 * 302.14786 * 6 3 2 38 38 H 1.08995 * 109.47341 * 182.14357 * 6 3 2 39 39 H 1.09005 * 109.47377 * 358.21273 * 8 7 6 40 40 H 1.08994 * 109.47431 * 238.21074 * 8 7 6 41 41 H 0.96995 * 119.99685 * 179.97438 * 12 11 9 42 42 H 1.08007 * 120.06954 * 0.02562 * 20 19 17 43 43 H 1.08004 * 119.92951 * 180.21175 * 21 20 19 44 44 H 1.07997 * 119.85509 * 179.76697 * 22 21 20 45 45 H 1.08997 * 109.47010 * 270.02224 * 24 23 22 46 46 H 1.09003 * 109.47170 * 30.02073 * 24 23 22 47 47 H 1.08996 * 109.47167 * 150.01876 * 24 23 22 48 48 H 1.07996 * 120.07765 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1265 1.3074 5 6 1.9982 3.6113 1.2399 6 6 3.5648 1.4445 -0.1257 7 7 3.9504 0.8354 -1.4011 8 6 3.9607 1.6415 -2.6243 9 6 5.3601 1.6911 -3.1814 10 1 5.5463 1.3880 -4.2012 11 6 6.4026 2.1232 -2.3893 12 7 6.1918 2.4087 -1.1230 13 14 8.1146 2.3031 -3.1149 14 1 8.0865 1.9225 -4.5500 15 1 8.5611 3.7134 -2.9860 16 1 9.0569 1.4169 -2.3856 17 6 4.2955 -0.4665 -1.4491 18 8 4.0156 -1.2040 -0.5244 19 6 5.0148 -0.9976 -2.6266 20 6 4.9150 -0.3507 -3.8596 21 6 5.5921 -0.8489 -4.9532 22 6 6.3608 -1.9933 -4.8324 23 6 6.4600 -2.6420 -3.6146 24 6 7.2998 -3.8872 -3.4922 25 6 5.7917 -2.1513 -2.5116 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6053 1.9816 -0.8418 32 1 0.5602 2.0216 1.4547 33 1 2.1630 1.6609 2.1396 34 1 1.7757 4.0836 2.1967 35 1 3.0610 3.7159 1.0214 36 1 1.4165 4.0922 0.4534 37 1 3.9977 0.8730 0.6954 38 1 3.9312 2.4703 -0.0874 39 1 3.6248 2.6530 -2.3957 40 1 3.2924 1.1942 -3.3599 41 1 6.9253 2.7124 -0.5657 42 1 4.3121 0.5402 -3.9561 43 1 5.5185 -0.3474 -5.9069 44 1 6.8859 -2.3814 -5.6926 45 1 6.6849 -4.7622 -3.7027 46 1 8.1231 -3.8417 -4.2051 47 1 7.6988 -3.9584 -2.4804 48 1 5.8695 -2.6588 -1.5615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104542991.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:45 Heat of formation + Delta-G solvation = 9.468866 kcal Electronic energy + Delta-G solvation = -26659.131100 eV Core-core repulsion = 23293.992695 eV Total energy + Delta-G solvation = -3365.138406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40575 -39.36396 -37.85124 -36.88826 -33.94797 -33.55910 -32.56942 -31.73159 -30.40754 -28.54720 -27.28777 -25.53809 -24.99263 -23.49076 -23.45159 -22.35862 -20.77744 -20.51341 -18.29394 -17.44036 -17.27399 -17.14613 -16.36192 -16.02517 -15.66198 -15.34066 -15.23054 -14.89350 -14.69077 -14.54532 -14.36091 -14.31995 -14.19713 -13.78025 -13.53362 -13.07341 -12.95430 -12.84828 -12.76610 -12.71769 -12.68464 -12.50254 -12.23464 -12.10742 -12.00749 -11.81949 -11.48355 -11.44358 -11.25525 -11.16679 -11.01992 -10.76818 -10.33188 -9.60790 -9.16134 -8.85408 -8.21036 -6.19905 0.36440 0.79541 1.35916 1.42271 1.47951 2.18124 2.36621 2.67055 3.05120 3.47798 3.91995 4.03076 4.08600 4.15072 4.19391 4.25543 4.41726 4.43982 4.52801 4.60036 4.63140 4.66376 4.75388 4.81855 4.86732 4.89441 4.91353 4.94319 5.00130 5.04812 5.11896 5.14234 5.18152 5.21021 5.29631 5.31313 5.39336 5.46784 5.53337 5.56724 5.63332 5.66358 5.78471 5.83354 5.87259 5.90599 6.21085 6.37079 6.57686 7.06432 7.35343 7.67790 8.78911 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.006308 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.326393 B = 4437.575884 C = 5766.802491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.150 3.850 7 N -0.561 5.561 8 C 0.220 3.780 9 C -0.544 4.544 10 H 0.098 0.902 11 C 0.045 3.955 12 N -0.874 5.874 13 Si 0.930 3.070 14 H -0.254 1.254 15 H -0.279 1.279 16 H -0.302 1.302 17 C 0.555 3.445 18 O -0.609 6.609 19 C -0.165 4.165 20 C -0.041 4.041 21 C -0.183 4.183 22 C -0.091 4.091 23 C -0.151 4.151 24 C -0.098 4.098 25 C -0.083 4.083 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.181 0.819 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.054 0.946 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -1.932 -3.517 6.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.115 4.115 4 C -0.147 4.147 5 C -0.206 4.206 6 C 0.027 3.973 7 N -0.287 5.287 8 C 0.100 3.900 9 C -0.580 4.580 10 H 0.115 0.885 11 C -0.161 4.161 12 N -0.509 5.509 13 Si 0.757 3.243 14 H -0.177 1.177 15 H -0.205 1.205 16 H -0.229 1.229 17 C 0.346 3.654 18 O -0.495 6.495 19 C -0.168 4.168 20 C -0.058 4.058 21 C -0.201 4.201 22 C -0.109 4.109 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.103 4.103 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.197 0.803 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.467 -2.146 -2.880 6.541 hybrid contribution 1.607 0.215 0.334 1.655 sum -3.861 -1.931 -2.546 5.012 Atomic orbital electron populations 1.21786 0.94420 1.01461 1.02280 1.21383 0.96242 0.95941 1.00507 1.21604 0.95071 0.96055 0.98778 1.21503 1.01713 0.95622 0.95853 1.21787 1.01083 0.95710 1.02063 1.21207 0.93372 0.98018 0.84719 1.47856 1.63002 1.08098 1.09764 1.19754 0.95401 0.91773 0.83025 1.22087 0.93296 1.42484 1.00135 0.88451 1.25480 1.01588 0.94112 0.94876 1.70064 1.32660 1.42303 1.05923 0.85896 0.81315 0.77235 0.79844 1.17725 1.20507 1.22926 1.18497 0.78006 0.82475 0.86443 1.90571 1.58342 1.58917 1.41684 1.19807 1.03812 0.98331 0.94894 1.23075 0.97608 0.94205 0.90925 1.21262 1.01354 0.98345 0.99130 1.21368 0.97537 0.95127 0.96907 1.19883 1.01913 1.00019 0.93349 1.20664 0.98559 0.93944 1.02338 1.20983 0.96432 0.94615 0.98232 0.91290 0.92458 0.93084 0.94556 0.94338 0.91315 0.89983 0.93171 0.91572 0.94090 0.92227 0.95433 0.90493 0.94299 0.93033 0.93179 0.80258 0.84211 0.83882 0.90560 0.90267 0.92660 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.68 71.98 0.70 -3.17 16 2 C -0.10 -3.69 4.22 30.60 0.13 -3.56 16 3 C -0.10 -3.29 2.06 -10.79 -0.02 -3.32 16 4 C -0.11 -3.09 5.28 30.60 0.16 -2.93 16 5 C -0.15 -3.97 9.78 71.98 0.70 -3.26 16 6 C 0.15 6.47 3.97 86.38 0.34 6.81 16 7 N -0.56 -25.58 1.50 -842.02 -1.27 -26.85 16 8 C 0.22 9.47 5.27 85.63 0.45 9.92 16 9 C -0.54 -24.85 5.56 25.60 0.14 -24.71 16 10 H 0.10 4.23 5.05 -2.91 -0.01 4.21 16 11 C 0.04 2.21 5.39 84.66 0.46 2.67 16 12 N -0.87 -45.40 11.00 21.45 0.24 -45.16 16 13 Si 0.93 40.77 29.54 68.60 2.03 42.80 16 14 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 17 C 0.55 27.38 6.35 86.79 0.55 27.93 16 18 O -0.61 -32.54 14.23 -3.87 -0.06 -32.59 16 19 C -0.17 -7.56 5.35 -20.09 -0.11 -7.67 16 20 C -0.04 -1.64 5.72 22.53 0.13 -1.51 16 21 C -0.18 -6.31 9.48 22.23 0.21 -6.10 16 22 C -0.09 -2.96 9.69 22.33 0.22 -2.74 16 23 C -0.15 -5.36 5.87 -19.90 -0.12 -5.47 16 24 C -0.10 -2.65 10.01 71.23 0.71 -1.94 16 25 C -0.08 -3.59 9.24 22.53 0.21 -3.38 16 26 H 0.07 1.61 6.43 -2.39 -0.02 1.59 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.52 5.84 -2.39 -0.01 1.51 16 30 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.08 1.96 6.28 -2.39 -0.01 1.95 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.27 6.41 -2.38 -0.02 1.26 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.03 1.33 7.50 -2.39 -0.02 1.31 16 38 H 0.08 3.46 5.58 -2.39 -0.01 3.45 16 39 H 0.04 1.69 7.89 -2.38 -0.02 1.67 16 40 H 0.05 2.01 6.31 -2.39 -0.02 1.99 16 41 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 42 H 0.18 7.14 2.31 -17.83 -0.04 7.10 16 43 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 47 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 48 H 0.10 4.40 7.83 -2.91 -0.02 4.38 16 Total: -1.00 -59.14 363.60 6.71 -52.42 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.91 Total: 31.81 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.87 Total: -22.43 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.03 Total: -72.01 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.06 Total: -32.59 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -59.14 6.71 -52.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104542991.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.892 kcal (2) G-P(sol) polarization free energy of solvation -59.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds